Clc10G20055 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G20055
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	pleiotropic drug resistance protein 3-like
Location	ClcChr10: 33618521 .. 33618769 (-)
RNA-Seq Expression	Clc10G20055
Synteny	Clc10G20055

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATCAGCATCCAAAGTATTTTGGTGTTTTGCTCAATGTTATGTTCTCTTCTCTACTACAACTTTCTTGGGAGATGCTGCTTGTCTCCATTACACCAAAATTTCAAATTGCTAACGTTTTGTCTCCTGCCTTCTACACCATGTTCAATCTCTTTTCTGGCTTTCTTGTTCCGAATCTGGTAAGTTATGTTTGTTTGTTTTGGGAAAAACAAACAAAAATTTTCTTTGATTTAATGAAAAGAGACTAA

mRNA sequence

ATGGATCAGCATCCAAAGTATTTTGGTGTTTTGCTCAATGTTATGTTCTCTTCTCTACTACAACTTTCTTGGGAGATGCTGCTTGTCTCCATTACACCAAAATTTCAAATTGCTAACGTTTTGTCTCCTGCCTTCTACACCATGTTCAATCTCTTTTCTGGCTTTCTTGTTCCGAATCTGGTAAGTTATGTTTGTTTGTTTTGGGAAAAACAAACAAAAATTTTCTTTGATTTAATGAAAAGAGACTAA

Coding sequence (CDS)

ATGGATCAGCATCCAAAGTATTTTGGTGTTTTGCTCAATGTTATGTTCTCTTCTCTACTACAACTTTCTTGGGAGATGCTGCTTGTCTCCATTACACCAAAATTTCAAATTGCTAACGTTTTGTCTCCTGCCTTCTACACCATGTTCAATCTCTTTTCTGGCTTTCTTGTTCCGAATCTGGTAAGTTATGTTTGTTTGTTTTGGGAAAAACAAACAAAAATTTTCTTTGATTTAATGAAAAGAGACTAA

Protein sequence

MDQHPKYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPNLVSYVCLFWEKQTKIFFDLMKRD

Homology

[Close]

BLAST of Clc10G20055 vs. NCBI nr
Match: XP_031741892.1 (pleiotropic drug resistance protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MFS+LL  ++  MLLVSITP +QIA++LS AFYTMFNLFSGFLVP
Sbjct: 1306 MFSTLLYFNYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVP 1350

[Close]

BLAST of Clc10G20055 vs. NCBI nr
Match: XP_004140460.1 (pleiotropic drug resistance protein 3 isoform X1 [Cucumis sativus] >KGN50690.2 hypothetical protein Csa_004732 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MFS+LL  ++  MLLVSITP +QIA++LS AFYTMFNLFSGFLVP
Sbjct: 1306 MFSTLLYFNYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVP 1350

[Close]

BLAST of Clc10G20055 vs. NCBI nr
Match: XP_008456863.1 (PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 3.6e-06
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MFS+LL  ++  MLLVSITP +QIA++LS AFYTMFNLFSGFLVP
Sbjct: 1307 MFSALLYFNYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVP 1351

[Close]

BLAST of Clc10G20055 vs. NCBI nr
Match: XP_023522396.1 (pleiotropic drug resistance protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 7  YFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPN 60
          ++ +L  +++ + L     MLLVSITP FQIAN+LS AFYTMFNLFSGFL+P+
Sbjct: 15 FYSILCALLYFNYL----GMLLVSITPNFQIANILSSAFYTMFNLFSGFLIPH 63

[Close]

BLAST of Clc10G20055 vs. NCBI nr
Match: XP_023529014.1 (pleiotropic drug resistance protein 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.1 bits (144), Expect = 1.0e-05
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 7    YFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPN 60
            ++ +L  +++ + L     MLLVSITP FQIAN+LS AFYTMFNLFSGFL+P+
Sbjct: 1296 FYSILCALLYFNYL----GMLLVSITPNFQIANILSSAFYTMFNLFSGFLIPH 1344

[Close]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot
Match: Q5W274 (Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 1.4e-05
Identity = 25/45 (55.56%), Postives = 35/45 (77.78%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MF +LL  ++  M+LVS+TP F +A +L  +FYTMFNLF+GFL+P
Sbjct: 1313 MFCTLLYFTYLGMMLVSMTPSFPVAAILQSSFYTMFNLFAGFLMP 1357

[Close]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot
Match: Q9LFH0 (ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=1 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 4.1e-05
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MF SLL  ++  M LVSITP F +A +L   FY  FNLFSGFL+P
Sbjct: 1316 MFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIP 1360

[Close]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot
Match: A2WSH0 (ABC transporter G family member 36 OS=Oryza sativa subsp. indica OX=39946 GN=ABCG36 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.1e-05
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 6    KYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            K+F  L  ++F+ L    + M+ V +TP + IA+++S AFY ++NLFSGF++P
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIP 1370

[Close]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot
Match: Q0JLC5 (ABC transporter G family member 36 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG36 PE=2 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.1e-05
Identity = 22/53 (41.51%), Postives = 37/53 (69.81%), Query Frame = 0


Query: 6    KYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            K+F  L  ++F+ L    + M+ V +TP + IA+++S AFY ++NLFSGF++P
Sbjct: 1318 KFFWYLFFMVFTLLYFTFYGMMAVGLTPNYHIASIVSSAFYAIWNLFSGFVIP 1370

[Close]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot
Match: Q7FMW4 (ABC transporter G family member 38 OS=Oryza sativa subsp. japonica OX=39947 GN=ABCG38 PE=3 SV=1)

HSP 1 Score: 47.8 bits (112), Expect = 7.1e-05
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 6    KYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            K+F       F+ L    + M+ VS++P  Q+A++L  AFYT+FNLFSGF +P
Sbjct: 1366 KFFWFFYVSFFTFLYFTYYGMMNVSVSPNLQVASILGAAFYTLFNLFSGFFIP 1418

[Close]

BLAST of Clc10G20055 vs. ExPASy TrEMBL
Match: A0A0A0KPP7 (ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G292210 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 15  MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
           MFS+LL  ++  MLLVSITP +QIA++LS AFYTMFNLFSGFLVP
Sbjct: 456 MFSTLLYFNYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVP 500

[Close]

BLAST of Clc10G20055 vs. ExPASy TrEMBL
Match: A0A1S3C5F9 (LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like OS=Cucumis melo OX=3656 GN=LOC103496678 PE=3 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.7e-06
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MFS+LL  ++  MLLVSITP +QIA++LS AFYTMFNLFSGFLVP
Sbjct: 1307 MFSALLYFNYLGMLLVSITPNYQIASILSSAFYTMFNLFSGFLVP 1351

[Close]

BLAST of Clc10G20055 vs. ExPASy TrEMBL
Match: A0A6J1J0E0 (pleiotropic drug resistance protein 3-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481557 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 7    YFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPN 60
            ++ +L  +++ + L     MLLVSITP FQIAN+LS AFYTMFNLFSGFL+P+
Sbjct: 1298 FYSILCALLYFNYL----GMLLVSITPNFQIANILSSAFYTMFNLFSGFLIPH 1346

[Close]

BLAST of Clc10G20055 vs. ExPASy TrEMBL
Match: A0A6J1IXK1 (pleiotropic drug resistance protein 3-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481557 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 5.1e-06
Identity = 31/53 (58.49%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 7    YFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPN 60
            ++ +L  +++ + L     MLLVSITP FQIAN+LS AFYTMFNLFSGFL+P+
Sbjct: 1093 FYSILCALLYFNYL----GMLLVSITPNFQIANILSSAFYTMFNLFSGFLIPH 1141

[Close]

BLAST of Clc10G20055 vs. ExPASy TrEMBL
Match: A0A5A7UFY6 (Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006020 PE=3 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 6.6e-06
Identity = 29/34 (85.29%), Postives = 31/34 (91.18%), Query Frame = 0


Query: 26   MLLVSITPKFQIANVLSPAFYTMFNLFSGFLVPN 60
            MLLVSITP F IAN+LS AFYT+FNLFSGFLVPN
Sbjct: 1321 MLLVSITPNFHIANILSSAFYTVFNLFSGFLVPN 1354

[Close]

BLAST of Clc10G20055 vs. TAIR 10
Match: AT3G53480.1 (pleiotropic drug resistance 9 )

HSP 1 Score: 48.5 bits (114), Expect = 2.9e-06
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 15   MFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            MF SLL  ++  M LVSITP F +A +L   FY  FNLFSGFL+P
Sbjct: 1316 MFCSLLTFNYLAMFLVSITPNFMVAAILQSLFYVGFNLFSGFLIP 1360

[Close]

BLAST of Clc10G20055 vs. TAIR 10
Match: AT1G59870.1 (ABC-2 and Plant PDR ABC-type transporter family protein )

HSP 1 Score: 46.2 bits (108), Expect = 1.5e-05
Identity = 23/53 (43.40%), Postives = 34/53 (64.15%), Query Frame = 0


Query: 6    KYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            K+F  +    FS L    + M+ VS+TP  Q+A++ + AFY +FNLFSGF +P
Sbjct: 1325 KFFWFVFVSYFSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIP 1377

[Close]

BLAST of Clc10G20055 vs. TAIR 10
Match: AT2G37280.1 (pleiotropic drug resistance 5 )

HSP 1 Score: 45.8 bits (107), Expect = 1.9e-05
Identity = 23/48 (47.92%), Postives = 33/48 (68.75%), Query Frame = 0


Query: 12   LNVMFSSLLQLSW-EMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            L  MF +LL  ++  M L+SITP F +A +L   F+T FN+F+GFL+P
Sbjct: 1276 LYAMFCNLLCFNYLAMFLISITPNFMVAAILQSLFFTTFNIFAGFLIP 1323

[Close]

BLAST of Clc10G20055 vs. TAIR 10
Match: AT1G15210.1 (pleiotropic drug resistance 7 )

HSP 1 Score: 44.7 bits (104), Expect = 4.2e-05
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 0


Query: 16   FSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            FS L    + M+ VS+TP  Q+A++ + AFY +FNLFSGF +P
Sbjct: 1308 FSFLYWTYYGMMTVSLTPNQQVASIFASAFYGIFNLFSGFFIP 1350

[Close]

BLAST of Clc10G20055 vs. TAIR 10
Match: AT1G15520.1 (pleiotropic drug resistance 12 )

HSP 1 Score: 43.9 bits (102), Expect = 7.2e-05
Identity = 24/53 (45.28%), Postives = 35/53 (66.04%), Query Frame = 0


Query: 6    KYFGVLLNVMFSSLLQLSWEMLLVSITPKFQIANVLSPAFYTMFNLFSGFLVP 59
            K+F  L  +  S L    + M+ V++TP   IA+V+S AFY ++NLFSGFL+P
Sbjct: 1283 KFFWYLFFMYGSFLTFTFYGMMAVAMTPNHHIASVVSSAFYGIWNLFSGFLIP 1335

The following BLAST results are available for this feature:

BLAST of Clc10G20055 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031741892.1	3.6e-06	73.33	pleiotropic drug resistance protein 3 isoform X2 [Cucumis sativus]	[more]
XP_004140460.1	3.6e-06	73.33	pleiotropic drug resistance protein 3 isoform X1 [Cucumis sativus] >KGN50690.2 h...	[more]
XP_008456863.1	3.6e-06	73.33	PREDICTED: LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like [Cucu...	[more]
XP_023522396.1	1.0e-05	58.49	pleiotropic drug resistance protein 3-like [Cucurbita pepo subsp. pepo]	[more]
XP_023529014.1	1.0e-05	58.49	pleiotropic drug resistance protein 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc10G20055 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5W274	1.4e-05	55.56	Pleiotropic drug resistance protein 3 OS=Nicotiana tabacum OX=4097 GN=PDR3 PE=2 ...	[more]
Q9LFH0	4.1e-05	57.78	ABC transporter G family member 37 OS=Arabidopsis thaliana OX=3702 GN=ABCG37 PE=...	[more]
A2WSH0	7.1e-05	41.51	ABC transporter G family member 36 OS=Oryza sativa subsp. indica OX=39946 GN=ABC...	[more]
Q0JLC5	7.1e-05	41.51	ABC transporter G family member 36 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]
Q7FMW4	7.1e-05	43.40	ABC transporter G family member 38 OS=Oryza sativa subsp. japonica OX=39947 GN=A...	[more]

BLAST of Clc10G20055 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KPP7	1.7e-06	73.33	ABC transporter domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G29...	[more]
A0A1S3C5F9	1.7e-06	73.33	LOW QUALITY PROTEIN: pleiotropic drug resistance protein 3-like OS=Cucumis melo ...	[more]
A0A6J1J0E0	5.1e-06	58.49	pleiotropic drug resistance protein 3-like isoform X1 OS=Cucurbita maxima OX=366...	[more]
A0A6J1IXK1	5.1e-06	58.49	pleiotropic drug resistance protein 3-like isoform X2 OS=Cucurbita maxima OX=366...	[more]
A0A5A7UFY6	6.6e-06	85.29	Pleiotropic drug resistance protein 3-like isoform X1 OS=Cucumis melo var. makuw...	[more]

BLAST of Clc10G20055 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G53480.1	2.9e-06	57.78	pleiotropic drug resistance 9	[more]
AT1G59870.1	1.5e-05	43.40	ABC-2 and Plant PDR ABC-type transporter family protein	[more]
AT2G37280.1	1.9e-05	47.92	pleiotropic drug resistance 5	[more]
AT1G15210.1	4.2e-05	48.84	pleiotropic drug resistance 7	[more]
AT1G15520.1	7.2e-05	45.28	pleiotropic drug resistance 12	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013525	ABC-2 type transporter	PFAM	PF01061	ABC2_membrane	coord: 6..58 e-value: 1.4E-6 score: 27.9

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G20055.1	Clc10G20055.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0140359	ABC-type transporter activity
molecular_function	GO:0005524	ATP binding