Clc10G19675 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G19675
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	50S ribosomal protein L23, chloroplastic
Location	ClcChr10: 33345780 .. 33346055 (+)
RNA-Seq Expression	Clc10G19675
Synteny	Clc10G19675

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGGAATCAAATATACAGTATTTACAGACAAAAGTATTCGGTTATTGGGGAAAAATCAATATACTTCTAATGTCAAATAAGGATCAACTAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAATAATGGGACCTATTATGGGACATATAATGCATTACAAACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTGA

mRNA sequence

ATGGATGGAATCAAATATACAGTATTTACAGACAAAAGATCAACTAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAATAATGGGACCTATTATGGGACATATAATGCATTACAAACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTGA

Coding sequence (CDS)

ATGGATGGAATCAAATATACAGTATTTACAGACAAAAGATCAACTAAAATAAAGCATTGGGTCGAACTCTTCTTTGGTGTCAAGGTAATAGCTATGAATAGTCATCGACTCCCGGGAAAGGGTAGAATAATGGGACCTATTATGGGACATATAATGCATTACAAACGTATGATCATTACGCTTCAACCGGGTTATTCTATTCCACCTCTTAGAAAGAAAAGAACTTGA

Protein sequence

MDGIKYTVFTDKRSTKIKHWVELFFGVKVIAMNSHRLPGKGRIMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT

Homology

[Close]

BLAST of Clc10G19675 vs. NCBI nr
Match: YP_009708687.1 (ribosomal protein L23 [Elytranthe albida] >YP_009708695.1 ribosomal protein L23 [Elytranthe albida] >QFV19866.1 ribosomal protein L23 [Macrosolen cochinchinensis] >QEV86296.1 ribosomal protein L23 [Elytranthe albida] >QEV86304.1 ribosomal protein L23 [Elytranthe albida] >QFV19874.1 ribosomal protein L23 [Macrosolen cochinchinensis])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTSNVESGSTKTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. NCBI nr
Match: YP_009766046.1 (ribosomal protein L23 [Amherstia nobilis] >YP_009766065.1 ribosomal protein L23 [Amherstia nobilis] >QIS96406.1 ribosomal protein L23 [Amherstia nobilis] >QIS96425.1 ribosomal protein L23 [Amherstia nobilis] >QVX31038.1 ribosomal protein L23 [Amherstia nobilis] >QVX31057.1 ribosomal protein L23 [Amherstia nobilis])

HSP 1 Score: 137.5 bits (345), Expect = 4.7e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDKR                   T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKRIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. NCBI nr
Match: YP_009921965.1 (ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >YP_009921986.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >QID04100.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >QID04116.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >QMS50499.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >QMS50500.1 ribosomal protein L23 [Disanthus cercidifolius subsp. longipes])

HSP 1 Score: 137.1 bits (344), Expect = 6.2e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLVKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. NCBI nr
Match: YP_009445195.1 (50S ribosomal protein L23 [Bertholletia excelsa] >YP_009445218.1 50S ribosomal protein L23 [Bertholletia excelsa] >ATV96701.1 50S ribosomal protein L23 [Couroupita guianensis] >ATV96792.1 50S ribosomal protein L23 [Couratari stellata] >ATV96883.1 50S ribosomal protein L23 [Lecythis congestiflora] >ATV96967.1 50S ribosomal protein L23 [Cariniana estrellensis] >ATV97057.1 50S ribosomal protein L23 [Eschweilera wachenheimii] >ATV97148.1 50S ribosomal protein L23 [Eschweilera alata] >ATV97239.1 50S ribosomal protein L23 [Allantoma lineata] >ATV97330.1 50S ribosomal protein L23 [Eschweilera integrifolia] >ATV97512.1 50S ribosomal protein L23 [Couratari macrosperma] >ATV97603.1 50S ribosomal protein L23 [Lecythis minor] >ATV97694.1 50S ribosomal protein L23 [Corythophora labriculata] >ATV97967.1 50S ribosomal protein L23 [Allantoma decandra] >ATV98330.1 50S ribosomal protein L23 [Lecythis pneumatophora] >ATV98418.1 50S ribosomal protein L23 [Eschweilera pittieri] >ATV98508.1 50S ribosomal protein L23 [Corythophora amapaensis] >ATV98686.1 50S ribosomal protein L23 [Eschweilera caudiculata] >ATV98777.1 50S ribosomal protein L23 [Eschweilera micrantha])

HSP 1 Score: 137.1 bits (344), Expect = 6.2e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. NCBI nr
Match: YP_009236321.1 (ribosomal protein L23 [Gynostemma pentaphyllum] >YP_009236337.1 ribosomal protein L23 [Gynostemma pentaphyllum] >YP_009430669.1 ribosomal protein L23 [Gynostemma cardiospermum] >YP_009430691.1 ribosomal protein L23 [Gynostemma cardiospermum] >YP_009439846.1 ribosomal protein L23 [Gynostemma laxiflorum] >YP_009439868.1 ribosomal protein L23 [Gynostemma laxiflorum] >YP_009439933.1 ribosomal protein L23 [Gynostemma caulopterum] >YP_009439955.1 ribosomal protein L23 [Gynostemma caulopterum] >YP_009440020.1 ribosomal protein L23 [Gynostemma pentagynum] >YP_009440042.1 ribosomal protein L23 [Gynostemma pentagynum] >YP_009440199.1 ribosomal protein L23 [Gynostemma longipes] >YP_009440221.1 ribosomal protein L23 [Gynostemma longipes] >YP_009440286.1 ribosomal protein L23 [Gynostemma burmanicum (nom. inval.)] >YP_009440308.1 ribosomal protein L23 [Gynostemma burmanicum (nom. inval.)] >YP_009440373.1 ribosomal protein L23 [Gynostemma pubescens] >YP_009440395.1 ribosomal protein L23 [Gynostemma pubescens] >YP_009468903.1 ribosomal protein L23 [Gynostemma compressum] >YP_009468925.1 ribosomal protein L23 [Gynostemma compressum] >YP_009485971.1 ribosomal protein L23 [Bretschneidera sinensis] >YP_009485993.1 ribosomal protein L23 [Bretschneidera sinensis] >YP_009526344.1 ribosomal protein L23 [Hemsleya lijiangensis] >YP_009526366.1 ribosomal protein L23 [Hemsleya lijiangensis] >YP_009751948.1 ribosomal protein L23 [Cyclanthera pedata] >YP_009751967.1 ribosomal protein L23 [Cyclanthera pedata] >YP_009891211.1 ribosomal protein L23 [Akania lucens] >YP_009891233.1 ribosomal protein L23 [Akania lucens] >YP_010119776.1 ribosomal protein L23 [Hemsleya zhejiangensis] >YP_010119797.1 ribosomal protein L23 [Hemsleya zhejiangensis] >AXU40446.1 ribosomal protein L23 [Gomphogyne cissiformis var. villosa] >AXU40620.1 ribosomal protein L23 [Gomphogyne cissiformis var. cissiformis] >AMF84036.1 ribosomal protein L23 [Gynostemma pentaphyllum] >AMF84037.1 ribosomal protein L23 [Gynostemma pentaphyllum] >ANI25226.1 ribosomal protein L23 [Gynostemma pentaphyllum])

HSP 1 Score: 137.1 bits (344), Expect = 6.2e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot
Match: A0A378 (50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-31
Identity = 68/93 (73.12%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot
Match: Q4VZK6 (50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-31
Identity = 68/93 (73.12%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot
Match: Q09FP7 (50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-31
Identity = 68/93 (73.12%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot
Match: Q09FY4 (50S ribosomal protein L23, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-31
Identity = 68/93 (73.12%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKGIRLLGNNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot
Match: Q0ZIV5 (50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A PE=3 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-31
Identity = 68/93 (73.12%), Postives = 70/93 (75.27%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTSNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy TrEMBL
Match: A0A6H0E3L6 (50S ribosomal protein L23, chloroplastic OS=Amherstia nobilis OX=162646 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDKR------------------STKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDKR                   T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYAVFTDKRIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy TrEMBL
Match: A0A5P9S1K9 (50S ribosomal protein L23, chloroplastic OS=Macrosolen cochinchinensis OX=227899 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTSNVESGSTKTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy TrEMBL
Match: A0A5J6KGS3 (50S ribosomal protein L23, chloroplastic OS=Elytranthe albida OX=2138330 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.3e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTSNVESGSTKTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy TrEMBL
Match: A0A2H4NVJ2 (50S ribosomal protein L23, chloroplastic OS=Eschweilera integrifolia OX=372715 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. ExPASy TrEMBL
Match: A0A2H4NTR2 (50S ribosomal protein L23, chloroplastic OS=Couroupita guianensis OX=66684 GN=rpl23 PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.0e-29
Identity = 69/93 (74.19%), Postives = 71/93 (76.34%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKYTVFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGKGR
Sbjct: 1  MDGIKYTVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKGR 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPIMGH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPIMGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. TAIR 10
Match: ATCG00840.1 (ribosomal protein L23.1 )

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-30
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPI+GH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

[Close]

BLAST of Clc10G19675 vs. TAIR 10
Match: ATCG01300.1 (ribosomal protein L23 )

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-30
Identity = 65/93 (69.89%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 1  MDGIKYTVFTDK------------------RSTKIKHWVELFFGVKVIAMNSHRLPGKGR 60
          MDGIKY VFTDK                    T+IKHWVELFFGVKVIAMNSHRLPGK +
Sbjct: 1  MDGIKYAVFTDKSIRLLGKNQYTFNVESGSTRTEIKHWVELFFGVKVIAMNSHRLPGKVK 60

Query: 61 IMGPIMGHIMHYKRMIITLQPGYSIPPLRKKRT 76
           MGPI+GH MHY+RMIITLQPGYSIPPLRKKRT
Sbjct: 61 RMGPILGHTMHYRRMIITLQPGYSIPPLRKKRT 93

The following BLAST results are available for this feature:

BLAST of Clc10G19675 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009708687.1	4.7e-29	74.19	ribosomal protein L23 [Elytranthe albida] >YP_009708695.1 ribosomal protein L23 ...	[more]
YP_009766046.1	4.7e-29	74.19	ribosomal protein L23 [Amherstia nobilis] >YP_009766065.1 ribosomal protein L23 ...	[more]
YP_009921965.1	6.2e-29	74.19	ribosomal protein L23 [Disanthus cercidifolius subsp. longipes] >YP_009921986.1 ...	[more]
YP_009445195.1	6.2e-29	74.19	50S ribosomal protein L23 [Bertholletia excelsa] >YP_009445218.1 50S ribosomal p...	[more]
YP_009236321.1	6.2e-29	74.19	ribosomal protein L23 [Gynostemma pentaphyllum] >YP_009236337.1 ribosomal protei...	[more]

BLAST of Clc10G19675 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A0A378	3.1e-31	73.12	50S ribosomal protein L23, chloroplastic OS=Coffea arabica OX=13443 GN=rpl23-A P...	[more]
Q4VZK6	3.1e-31	73.12	50S ribosomal protein L23, chloroplastic OS=Cucumis sativus OX=3659 GN=rpl23-A P...	[more]
Q09FP7	3.1e-31	73.12	50S ribosomal protein L23, chloroplastic OS=Nandina domestica OX=41776 GN=rpl23-...	[more]
Q09FY4	3.1e-31	73.12	50S ribosomal protein L23, chloroplastic OS=Platanus occidentalis OX=4403 GN=rpl...	[more]
Q0ZIV5	3.1e-31	73.12	50S ribosomal protein L23, chloroplastic OS=Vitis vinifera OX=29760 GN=rpl23-A P...	[more]

BLAST of Clc10G19675 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0E3L6	2.3e-29	74.19	50S ribosomal protein L23, chloroplastic OS=Amherstia nobilis OX=162646 GN=rpl23...	[more]
A0A5P9S1K9	2.3e-29	74.19	50S ribosomal protein L23, chloroplastic OS=Macrosolen cochinchinensis OX=227899...	[more]
A0A5J6KGS3	2.3e-29	74.19	50S ribosomal protein L23, chloroplastic OS=Elytranthe albida OX=2138330 GN=rpl2...	[more]
A0A2H4NVJ2	3.0e-29	74.19	50S ribosomal protein L23, chloroplastic OS=Eschweilera integrifolia OX=372715 G...	[more]
A0A2H4NTR2	3.0e-29	74.19	50S ribosomal protein L23, chloroplastic OS=Couroupita guianensis OX=66684 GN=rp...	[more]

BLAST of Clc10G19675 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00840.1	1.2e-30	69.89	ribosomal protein L23.1	[more]
ATCG01300.1	1.2e-30	69.89	ribosomal protein L23	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 1..72 e-value: 3.8E-10 score: 41.9
IPR013025	Ribosomal protein L25/L23	PFAM	PF00276	Ribosomal_L23	coord: 6..67 e-value: 2.8E-10 score: 40.4
IPR013025	Ribosomal protein L25/L23	PANTHER	PTHR11620	60S RIBOSOMAL PROTEIN L23A	coord: 15..71
None	No IPR available	PANTHER	PTHR11620:SF69	50S RIBOSOMAL PROTEIN L23, CHLOROPLASTIC	coord: 15..71
IPR001014	Ribosomal protein L23/L25, conserved site	PROSITE	PS00050	RIBOSOMAL_L23	coord: 55..70
IPR012678	Ribosomal protein L23/L15e core domain superfamily	SUPERFAMILY	54189	Ribosomal proteins S24e, L23 and L15e	coord: 6..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G19675.1	Clc10G19675.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0009536	plastid
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome