Clc10G19495 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G19495
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	alpha carbonic anhydrase 7-like
Location	ClcChr10: 33165088 .. 33167795 (-)
RNA-Seq Expression	Clc10G19495
Synteny	Clc10G19495

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTCGTCTGCGGTAAGGTTCTAATTTCAAATCCAATACAACGCCTGTGGTACATAAATTGGTCAACTTTCGCATGAAAGAAGTTAAAAAGAATAACAATATGAATCATTTGAAGAAGAGATATAATAGTCTTTCCCAGACTGACGCAATTATAGGTCTGTTGAAAATAATTATAAATATAGTAAAATTCTACATTCTATTTACGATAGACTGAGATAGACACGAATAAAAAGTGAAAAATGAAAATTTGATATATTTATAAATAGTTTGATATTTCTGTTTATAATAATTTTCTATATATAATTCAAGTATAAGTATATAATCTATAAACTATATCCAATTCAAAATAACAAAATCTAATTAATAATCTAATCTTCATTGTACACTTGAAATCGTCTCCATAGAAAGAAAAACTTCGCTTAATTAAAGAAAAAATTGAATCTTTTCAGGTCTATTTCTCTTATATCAACAAAATTTTCGTTGCTTCAATTTTTCATTACTAATAATGTTTTTCGTACACTTTTATCAAATAATTTCAATTACACGAAATTACTTAGCTTGCCATTTAAATCATCATATAAACTTGAACATGCATGATTGTTTTATATTTAATTAAAATTAAATATTAATGTAAAAATAATTAAAACAATATATCTACTCTAGTCATTGTAGCTAAATTGTAACACAGTTTTCTATTTTAGTCTCTACAGTTTCAATAAATCTTAAATTTAGTCCTCGATGTTAATTTATGTTGATTCTTTTGTCCTTATTTGGATTTTTATCATAAATTTTGAGAATGTATTCTCATATAGTATTTTATTGCATGAAAATTAACTTTGAGAGACTAAAATATTGAAAATTTCAAGAATTGAAGAGTTCTTTTCTATTATTAATTAATTTACCTTGGTTGACTAGAGAATTAGTGTCTAATATGTGTGTGTGTTTTTTCTTTCATATTTATAATATTTTAATTCCTTATTTTTATAAAATTTCATCTTAATTATGCCAAATTTAACACTTTTATCTCATGTGACTAAATTCTAATTTCTCTAGATGAAGATGAAATTTTGAAGTCTTATTCTTTCTTCTTTTTTTGAAAAAAAAATGAATGAAGGAATGTAGGTAGATTGGAAAGGAAATGATGGTGGATCAATAAAGATCAACAACATGGATTACCACCAACTTCAAAATTTCCATTGATTTCTATGGTATTTATTAAGTGTAACTAATTAATTAAATTCACATGTTAATTATTAGGTTCCCTTTGGAGCTTCACATGATCCACATCGGCAATGTAACAAAAAGTATAGCTGTTATTGGGGTTTTGTTTGAGTATGGTCTACCTGATCCCTTCATCTCTCTGGTAAATTTAAATTTTACTCTTAATCATTATCTTAAGTGATCATTAGCTATAACATAACTCAACCATAGTTTGATATCTACTGTCTCCTTTGAAATCCGAAGATCAAATTTCTTCTGCCATTTGTTAGCATTAAAAATTTAAAAAAAATTAAAGAAAAACTCAATTGATCATTTATTAGACTACAAATTTAAGTCATAAGATTATTTTTTTTAAATGCCGTAATTTACTCTTCCTAACTCTTTTTTAATTAAATCTCTCCTTAGTTGAAAATTTAGGTTCAAAATCTAAAAATAAAAACAAGTTTAAAAAACTACTTTTTTTTCAAAACTTTTGGCTTGGTTTTAAAAACATAGGTAGGAATTAGATAACAAAATATAGAAACTCAAAATAATGTTAATAAATTTAATTTTTAAAAACTAACTAAATAGTTATCCATCGTAACCTTAGTTGTTAGTTTTTAGGTTTTAAAATTAATTAAGCTTATTAACACTACTTCCACTTTCTTTTAAAAAAATTATTATCTACTTTTATGATTTTGTTTAAAAAAACCAAGTTAAGTTTTTTTAAAAAAAGAAAATTTATTTTTGTTTTTAAAATTTGGCTTAGAATTCAAGTGTTCAATTAAGAATGATCGAAAACAATGACAAAGAAGTTGTAAGAAAACAAGCATAGTTTTCAAAAATCAAATATTATAATTATCAGACGAAAGGAGGCCTTATTTTCTAAGCCCTATAGTGCCATTTAATTTACTTGAAACAGTTGTAAATATAGCAATTAGACTCAAAGTATTAACAGATATAACATAATCCAAATTAATTTATAAATGTAGCAAAGTTTAGATGCAACTCTTGAAGTCTATCAATGTTACATGAACAAGTTGTTTTACCTAACTAAGTGAAGCTTCTCAAACAAGTTACCGTAGAAGTAAGTTTATTTTAACATTGATATGATATTATTCATTTTGAAACTAAATTTTGTAAACAAACTTTTGGGCTTTGAAGAAAGATGTTTCTCTCGGTTCTCATTTAGAATAGGTTGAATATATATAAATGCATGAAAAATATGTAAATTAGCATATATGGAAATATATTTATGAATAATAATTCCTATGGGCATTCCATATGGTTATGATGAATTTGAATGCAAAGAAGAATGCGAGGCCATTGCAAAAGATTAATGGTAGAGACGTTTTCTACTTTGACCCATTCTCATGGGGGAGTGTTGCAGCCGAGTAGATGCAATAATGAAGTGTCACATATAGTTGGGATTTAGTCCATATCTAGGGGCTGAATATCTAGGGGTTGTGTTGTGTGATGTTGTGTTAATTATAGTTGGGATTTAG

mRNA sequence

ATGAATTCGTCTGCGGTAAGGTTCCCTTTGGAGCTTCACATGATCCACATCGGCAATGTAACAAAAAGTATAGCTGTTATTGGGGTTTTGTTTGAGTATGGTCTACCTGATCCCTTCATCTCTCTGGTAAATTTAAATTTTACTCTTAATCATTATCTTAATCCATATCTAGGGGCTGAATATCTAGGGGTTGTGTTGTGTGATGTTGTGTTAATTATAGTTGGGATTTAG

Coding sequence (CDS)

ATGAATTCGTCTGCGGTAAGGTTCCCTTTGGAGCTTCACATGATCCACATCGGCAATGTAACAAAAAGTATAGCTGTTATTGGGGTTTTGTTTGAGTATGGTCTACCTGATCCCTTCATCTCTCTGGTAAATTTAAATTTTACTCTTAATCATTATCTTAATCCATATCTAGGGGCTGAATATCTAGGGGTTGTGTTGTGTGATGTTGTGTTAATTATAGTTGGGATTTAG

Protein sequence

MNSSAVRFPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVVLCDVVLIIVGI

Homology

[Close]

BLAST of Clc10G19495 vs. NCBI nr
Match: XP_008442729.2 (PREDICTED: alpha carbonic anhydrase 7-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-07
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H  NVT+ IAV+GVLFEYG  DPFIS+V  +     YLN   G E+LG V
Sbjct: 142 YPLELHMVHFNNVTQKIAVVGVLFEYGPRDPFISMVERDI---KYLNIEGGEEFLGKV 196

[Close]

BLAST of Clc10G19495 vs. NCBI nr
Match: KAA0043976.1 (alpha carbonic anhydrase 7-like [Cucumis melo var. makuwa] >TYK25164.1 alpha carbonic anhydrase 7-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.5 bits (158), Expect = 2.3e-07
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H  NVT+ IAV+GVLFEYG  DPFIS++  +     YLN   G E+LG V
Sbjct: 115 YPLELHMVHFNNVTQKIAVVGVLFEYGPRDPFISMIERDI---KYLNIEGGEEFLGKV 169

[Close]

BLAST of Clc10G19495 vs. NCBI nr
Match: XP_022983070.1 (alpha carbonic anhydrase 7-like [Cucurbita maxima])

HSP 1 Score: 64.3 bits (155), Expect = 5.2e-07
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           FPLELHM+HI NVTK+IAVIG+L+EYG PDPFI ++  +      L+   G E+LG V
Sbjct: 135 FPLELHMVHINNVTKNIAVIGILYEYGPPDPFIYMLERDI---QNLDIDGGVEFLGQV 189

[Close]

BLAST of Clc10G19495 vs. NCBI nr
Match: XP_038904416.1 (dioscorin dioA3-like [Benincasa hispida])

HSP 1 Score: 62.0 bits (149), Expect = 2.6e-06
Identity = 30/58 (51.72%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H+ N+T+ IAVIGVLFEYG  DPFI ++  +     Y++   G E+LG V
Sbjct: 138 YPLELHMVHVNNITQKIAVIGVLFEYGRRDPFIYMIERDI---KYIDIEGGEEFLGKV 192

[Close]

BLAST of Clc10G19495 vs. NCBI nr
Match: XP_023527997.1 (alpha carbonic anhydrase 7-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 60.5 bits (145), Expect = 7.4e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           FPLELHM+HI NVTK+IAVIG+L+EYG  DPFI ++  +      L+   G E+LG V
Sbjct: 138 FPLELHMVHINNVTKNIAVIGILYEYGPLDPFIFMLERDI---QNLDIEGGLEFLGQV 192

[Close]

BLAST of Clc10G19495 vs. ExPASy TrEMBL
Match: A0A1S3B753 (alpha carbonic anhydrase 7-like OS=Cucumis melo OX=3656 GN=LOC103486518 PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 8.6e-08
Identity = 34/58 (58.62%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H  NVT+ IAV+GVLFEYG  DPFIS+V  +     YLN   G E+LG V
Sbjct: 142 YPLELHMVHFNNVTQKIAVVGVLFEYGPRDPFISMVERDI---KYLNIEGGEEFLGKV 196

[Close]

BLAST of Clc10G19495 vs. ExPASy TrEMBL
Match: A0A5A7TPG5 (Alpha carbonic anhydrase 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G002900 PE=3 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 1.1e-07
Identity = 33/58 (56.90%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H  NVT+ IAV+GVLFEYG  DPFIS++  +     YLN   G E+LG V
Sbjct: 115 YPLELHMVHFNNVTQKIAVVGVLFEYGPRDPFISMIERDI---KYLNIEGGEEFLGKV 169

[Close]

BLAST of Clc10G19495 vs. ExPASy TrEMBL
Match: A0A6J1J4N7 (alpha carbonic anhydrase 7-like OS=Cucurbita maxima OX=3661 GN=LOC111481725 PE=3 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 2.5e-07
Identity = 33/58 (56.90%), Postives = 42/58 (72.41%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           FPLELHM+HI NVTK+IAVIG+L+EYG PDPFI ++  +      L+   G E+LG V
Sbjct: 135 FPLELHMVHINNVTKNIAVIGILYEYGPPDPFIYMLERDI---QNLDIDGGVEFLGQV 189

[Close]

BLAST of Clc10G19495 vs. ExPASy TrEMBL
Match: A0A6J1F9G4 (alpha carbonic anhydrase 7-like OS=Cucurbita moschata OX=3662 GN=LOC111442037 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 3.6e-06
Identity = 32/58 (55.17%), Postives = 41/58 (70.69%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           FPLELHM+HI NVTK+IAVIG+L+EYG  DPFI ++  +      L+   G E+LG V
Sbjct: 138 FPLELHMVHINNVTKNIAVIGILYEYGPLDPFIYMLERDI---QNLDIDGGVEFLGQV 192

[Close]

BLAST of Clc10G19495 vs. ExPASy TrEMBL
Match: A0A0A0LEA7 (Alpha-carbonic anhydrase domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G743390 PE=3 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 4.7e-06
Identity = 30/58 (51.72%), Postives = 39/58 (67.24%), Query Frame = 0


Query: 8   FPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLVNLNFTLNHYLNPYLGAEYLGVV 66
           +PLELHM+H  NVT+  AV+GVLFEYG  DPFI ++  +     Y+N   G E+LG V
Sbjct: 144 YPLELHMVHFNNVTQKTAVVGVLFEYGPRDPFIYMIERDI---KYINIDGGEEFLGKV 198

[Close]

BLAST of Clc10G19495 vs. TAIR 10
Match: AT2G28210.1 (alpha carbonic anhydrase 2 )

HSP 1 Score: 41.2 bits (95), Expect = 4.4e-04
Identity = 19/37 (51.35%), Postives = 27/37 (72.97%), Query Frame = 0


Query: 7   RFPLELHMIHIGNVTKSIAVIGVLFEYGLPDPFISLV 44
           RF LELHM+H  N+  S+AV+ VL++ G PD F+ L+
Sbjct: 115 RFALELHMVH-ENINGSLAVVTVLYKIGRPDSFLGLL 150

The following BLAST results are available for this feature:

BLAST of Clc10G19495 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442729.2	1.8e-07	58.62	PREDICTED: alpha carbonic anhydrase 7-like [Cucumis melo]	[more]
KAA0043976.1	2.3e-07	56.90	alpha carbonic anhydrase 7-like [Cucumis melo var. makuwa] >TYK25164.1 alpha car...	[more]
XP_022983070.1	5.2e-07	56.90	alpha carbonic anhydrase 7-like [Cucurbita maxima]	[more]
XP_038904416.1	2.6e-06	51.72	dioscorin dioA3-like [Benincasa hispida]	[more]
XP_023527997.1	7.4e-06	55.17	alpha carbonic anhydrase 7-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc10G19495 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G19495 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B753	8.6e-08	58.62	alpha carbonic anhydrase 7-like OS=Cucumis melo OX=3656 GN=LOC103486518 PE=3 SV=...	[more]
A0A5A7TPG5	1.1e-07	56.90	Alpha carbonic anhydrase 7-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A6J1J4N7	2.5e-07	56.90	alpha carbonic anhydrase 7-like OS=Cucurbita maxima OX=3661 GN=LOC111481725 PE=3...	[more]
A0A6J1F9G4	3.6e-06	55.17	alpha carbonic anhydrase 7-like OS=Cucurbita moschata OX=3662 GN=LOC111442037 PE...	[more]
A0A0A0LEA7	4.7e-06	51.72	Alpha-carbonic anhydrase domain-containing protein OS=Cucumis sativus OX=3659 GN...	[more]

BLAST of Clc10G19495 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28210.1	4.4e-04	51.35	alpha carbonic anhydrase 2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001148	Alpha carbonic anhydrase domain	PROSITE	PS51144	ALPHA_CA_2	coord: 1..76 score: 8.60755
IPR036398	Alpha carbonic anhydrase domain superfamily	SUPERFAMILY	51069	Carbonic anhydrase	coord: 6..43

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G19495.1	Clc10G19495.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0009570	chloroplast stroma
molecular_function	GO:0004089	carbonate dehydratase activity
molecular_function	GO:0008270	zinc ion binding