Clc10G19040 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G19040
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	60S ribosomal protein L24-like
Location	ClcChr10: 32836505 .. 32838739 (-)
RNA-Seq Expression	Clc10G19040
Synteny	Clc10G19040

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCTCAAGTTCGTCAAATCTTTCATCTCTGTCTCTTATCCTGTTAGATCTGATTGCCATTTTGATTGCATGTACTCTGTTTTCGTTTTATATGTCAACATGATTTTCTGTTCCTGTTTTTGCATCTGTACGTGCTTTGTTAACGATCGAGAAATTAAGGGTTTTACGTATTTTTGTGTGAGGAATAGATTTTTCCTTGAAAATCTTTCATTTGAGGAACTCAAAATCTCAACGAAGTTCACCGTTGGTTTCCCCCATTTCTAAGTGATTAATTGCGAAGTATAATTCACGTTTGCTATTTTCAATACTTCTGCATTTCGCAGTATTGGCGTGGTAAAAAAGGCCAATAATGGGATCGGCATCTGTTGTGGTTGAGTGATCTGGTTGGAAGGATGTATTTATGATGGATAATTAGTCACAGGGTTCGTAGTTTGTTTAAAGGGGAAGATTTAGATGGACAGTTGTTTGCTTCTAGGTACTATAGCTGAATTTTTGTTTCAGTAAGCGGGTGCTTTGGATATTTGTATCATAATTACTTGCTGTAACTAAGCGTGAAAGCTTCGATATTCATGTCTTCGATCTTGTTCATGGACACTGTATTTGGGAAAAGAAGTACAAGAGACAATATGGTGAACCTGGTGCCTTTTTTTAACATAAATTCTGCTCCTAACAGTTTTATGGCCTTTTCAGGACTGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGGTGATTCTCAGGTGATTTTGATTACCATATTTTAGACATGTTTCGAAATAAATAGATGAATTTCATTCCTTGTTATTAAAAAATTTGTGAACTTTGTTTTTCTCCAGTTAACTTGAATCGATTGGGGGTTGGAGGCTTATTATTTCATTCATTTGAATTATTCTTACTTTCCCCTGTTTGTTTGACTTTTTTTCTCTCTCAATCTGTTAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCTTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGTAATATTAATATTTTCTACAGACTTTGGTTCAATCTTCTGTTTATTTATTTACTATTGAGTGAATATTTTCTTTAAATAGCACATACAAACCCGATGTGGATAATGATCCTCATCATGCGAGTTTGATTGTACCAAAAATCTTGAAACAATGTTACAAGGGTACTTGCAAATACAAGTCTTATTTATAGAATAACTAGATCCAAACCTCGTTTATAACAAGACTGGTAGTAATTTAACCGTAATACCAAGTGAGGTATCATGTATATACAAACATGTATTTATCATTACTATTCTTATATTTAGGATTAAAGGTGACGTGTTCAAGTTTTATGACCAAATTGATTTCCTAGACCTCCATTTGAGAAGCATTAAAAGTATTAAATCAACCATTAACCCTGGCCGTAGGGATTCTCTGTGAATGTTGTTTTGTGGGGTTGTTGTGGGGAATAGATTCTTATCTTATTTTGACATCCGTAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACCAGGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTAATCCAGAAAAAGAGAGCTGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGTGTGTACTCATGAACGAATGATTGAACAAGAATATAAATGTTATACATCAAACATGTGAACTTGTACTGAATCCATGAATTTTGATTGAATTCCAGGGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGTGCCAGGTAAGGGTAATGTTGCCAAGGGACCTGCATCCAAGGGTCCAAAGCTCGGTGGTGGCGGCGGAAAGCGTTGATCTATTTTGGTTTTTTTTGTTATTTAAATTGGCAAGTTTAGTAGATAGGACATCTATTAATTTTGAGTACTTACGTGTTATGAGAAGTGATCTGTACTAATTGGCAAACTTATTGTGCACTTAGTTGTTTTTGGAAAAAGGTTTACAATTGAGCAATGCAGTTATTTTTTGTTTTTGAGTTCCTTCCAATTATGCTCTCATTTTTGTGCCCGATGTAATGTGTACTGCTGTGAGAGGCTCTCATTATGCATTTACAAATGTGGTCCTTGTTATTGAAGCTTAT

mRNA sequence

ATGGTTCTCAAGTTCGTCAAATCTTTCATCTCTGTCTCTTATCCTGTTAGATCTGATTGCCATTTTGATTGCATGACTGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGGTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCTTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACCAGGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTAATCCAGAAAAAGAGAGCTGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGTGCCAGGTAAGGGTAATGTTGCCAAGGGACCTGCATCCAAGGGTCCAAAGCTCGGTGGTGGCGGCGGAAAGCGTTGATCTATTTTGGTTTTTTTTGTTATTTAAATTGGCAAGTTTAGTAGATAGGACATCTATTAATTTTGAGTACTTACGTGTTATGAGAAGTGATCTGTACTAATTGGCAAACTTATTGTGCACTTAGTTGTTTTTGGAAAAAGGTTTACAATTGAGCAATGCAGTTATTTTTTGTTTTTGAGTTCCTTCCAATTATGCTCTCATTTTTGTGCCCGATGTAATGTGTACTGCTGTGAGAGGCTCTCATTATGCATTTACAAATGTGGTCCTTGTTATTGAAGCTTAT

Coding sequence (CDS)

ATGGTTCTCAAGTTCGTCAAATCTTTCATCTCTGTCTCTTATCCTGTTAGATCTGATTGCCATTTTGATTGCATGACTGAACTTTGTCGATTCAGTGGTGCCAAGATATACCCAGGGAAAGGCATCAGATTTGTCCGGGGTGATTCTCAGGTGTTTCTCTTTGCTAACTCAAAATGCAAGAGGTACTTCCACAACCGGCTGAAGCCTTCAAAGCTTACCTGGACAGCCATGTACAGGAAGCAGCATAAGAAGGATATTGCTCAAGAGGCTGTGAAGAAGAGGAGACGTACCACCAGGAAGCCCTACTCTAGGTCCATTGTTGGTGCAACTTTGGAAGTAATCCAGAAAAAGAGAGCTGAAAAGCCAGAAGTGCGTGATGCTGCTAGAGAAGCTGCTCTGCGGGAAATTAAGGAAAGGATTAAGAAAACCAAGGACGAGAAGAAGGCCAAGAAGGCAGAAGTGTTGGCCAAGTCACAGAAGGTGCCAGGTAAGGGTAATGTTGCCAAGGGACCTGCATCCAAGGGTCCAAAGCTCGGTGGTGGCGGCGGAAAGCGTTGA

Protein sequence

MVLKFVKSFISVSYPVRSDCHFDCMTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKDEKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR

Homology

[Close]

BLAST of Clc10G19040 vs. NCBI nr
Match: KAA0043936.1 (60S ribosomal protein L24-like [Cucumis melo var. makuwa] >TYK25203.1 60S ribosomal protein L24-like [Cucumis melo var. makuwa])

HSP 1 Score: 294.7 bits (753), Expect = 5.7e-76
Identity = 158/164 (96.34%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 22  FDCMTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 81
           F   TELCRFSGAKIYPGKGIRFVR DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 59  FMITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 118

Query: 82  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 141
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 119 HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 178

Query: 142 KTKDEKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           KTKDEKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 179 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of Clc10G19040 vs. NCBI nr
Match: XP_008442779.1 (PREDICTED: 60S ribosomal protein L24-like [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 7.5e-76
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSGAKIYPGKGIRFVR DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Clc10G19040 vs. NCBI nr
Match: KAG7017407.1 (60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 293.5 bits (750), Expect = 1.3e-75
Identity = 156/163 (95.71%), Postives = 159/163 (97.55%), Query Frame = 0


Query: 23  DCMTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 82
           D  TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH
Sbjct: 23  DGETELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQH 82

Query: 83  KKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 142
           KKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK
Sbjct: 83  KKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 142

Query: 143 TKDEKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           TKDEKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 143 TKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 185

[Close]

BLAST of Clc10G19040 vs. NCBI nr
Match: XP_022983123.1 (60S ribosomal protein L24-like isoform X1 [Cucurbita maxima])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 8   TELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 67

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 68  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 127

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 128 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 167

[Close]

BLAST of Clc10G19040 vs. NCBI nr
Match: XP_022935353.1 (60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosomal protein L24-like isoform X2 [Cucurbita maxima] >XP_023527804.1 60S ribosomal protein L24-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 292.7 bits (748), Expect = 2.2e-75
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot
Match: O65743 (60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 1.7e-70
Identity = 141/159 (88.68%), Postives = 148/159 (93.08%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSGAKIYPG+GIRF+RGDSQVFLF NSKCKRYFHNRLKPSKLTWTAM+RKQHKKD
Sbjct: 5   TELCRFSGAKIYPGRGIRFIRGDSQVFLFVNSKCKRYFHNRLKPSKLTWTAMFRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
            AQEAVKKRRR T+KPYSRSIVGATLEVIQKKR EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKKRRRATKKPYSRSIVGATLEVIQKKRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGK 185
           EKKAKKAEV +K+QK  GKGNV KG   KGPK+GGGGGK
Sbjct: 125 EKKAKKAEVASKAQKSQGKGNVQKGALPKGPKMGGGGGK 163

[Close]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot
Match: Q9FUL4 (60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.0e-68
Identity = 142/156 (91.03%), Postives = 147/156 (94.23%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSGAKIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTT+KPYSRSIVGATLEVIQK+R EKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKRRTEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPAS-KGPKLGG 181
           EKKAKKAEV  KSQK  GKG++AKG A  KGPKLGG
Sbjct: 125 EKKAKKAEV-TKSQKSQGKGSIAKGGAQPKGPKLGG 159

[Close]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot
Match: P50888 (60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 1.9e-66
Identity = 139/160 (86.88%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG KIYPGKGIRF+R DSQVFLFANSKCKRYFHNRLKP+KL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGKGIRFIRSDSQVFLFANSKCKRYFHNRLKPAKLCWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           I  EA KKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IHAEAAKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEV    +   GKG V KG  SKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVTKSQKSQGGKGAVQKG--SKGPKLGGGGGKR 162

[Close]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot
Match: Q42347 (60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2)

HSP 1 Score: 248.1 bits (632), Expect = 8.0e-65
Identity = 132/160 (82.50%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
            AQEAVK+RRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKK E  +K QK   KGN+ K  A K  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot
Match: P38666 (60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2)

HSP 1 Score: 247.7 bits (631), Expect = 1.0e-64
Identity = 136/161 (84.47%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
            AQEAVK+RRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAK-GPASKGPKLGGGGGKR 186
           EKKAKK E  +K QKV  K N  K   ASKGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Clc10G19040 vs. ExPASy TrEMBL
Match: A0A5A7TPC8 (60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G003320 PE=3 SV=1)

HSP 1 Score: 294.7 bits (753), Expect = 2.8e-76
Identity = 158/164 (96.34%), Postives = 159/164 (96.95%), Query Frame = 0


Query: 22  FDCMTELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 81
           F   TELCRFSGAKIYPGKGIRFVR DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ
Sbjct: 59  FMITTELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQ 118

Query: 82  HKKDIAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 141
           HKKDIAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK
Sbjct: 119 HKKDIAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIK 178

Query: 142 KTKDEKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           KTKDEKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 179 KTKDEKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 222

[Close]

BLAST of Clc10G19040 vs. ExPASy TrEMBL
Match: A0A1S3B6I5 (60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 3.6e-76
Identity = 157/160 (98.12%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSGAKIYPGKGIRFVR DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGAKIYPGKGIRFVRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTT+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Clc10G19040 vs. ExPASy TrEMBL
Match: A0A6J1J6V6 (60S ribosomal protein L24-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111481766 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 8   TELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 67

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 68  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 127

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 128 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 167

[Close]

BLAST of Clc10G19040 vs. ExPASy TrEMBL
Match: A0A6J1J6E9 (60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111481766 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Clc10G19040 vs. ExPASy TrEMBL
Match: A0A6J1FAB6 (60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=3 SV=1)

HSP 1 Score: 292.7 bits (748), Expect = 1.0e-75
Identity = 155/160 (96.88%), Postives = 158/160 (98.75%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG+KIYPG+GIRF+R DSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD
Sbjct: 5   TELCRFSGSKIYPGRGIRFIRADSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
           IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKKAEVLAKSQK PGKGNVAKGPASKGPKLGGGGGKR
Sbjct: 125 EKKAKKAEVLAKSQKAPGKGNVAKGPASKGPKLGGGGGKR 164

[Close]

BLAST of Clc10G19040 vs. TAIR 10
Match: AT2G36620.1 (ribosomal protein L24 )

HSP 1 Score: 248.1 bits (632), Expect = 5.7e-66
Identity = 132/160 (82.50%), Postives = 141/160 (88.12%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLCWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
            AQEAVK+RRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAKGPASKGPKLGGGGGKR 186
           EKKAKK E  +K QK   KGN+ K  A K  K+GGGGG+R
Sbjct: 125 EKKAKKVEYASKQQKSQVKGNIPKSAAPKAAKMGGGGGRR 164

[Close]

BLAST of Clc10G19040 vs. TAIR 10
Match: AT3G53020.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 247.7 bits (631), Expect = 7.5e-66
Identity = 136/161 (84.47%), Postives = 143/161 (88.82%), Query Frame = 0


Query: 26  TELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKD 85
           TELCRFSG KIYPG+GIRF+R DSQVFLF NSKCKRYFHN+LKPSKL WTAMYRKQHKKD
Sbjct: 5   TELCRFSGQKIYPGRGIRFIRSDSQVFLFLNSKCKRYFHNKLKPSKLAWTAMYRKQHKKD 64

Query: 86  IAQEAVKKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 145
            AQEAVK+RRR T+KPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD
Sbjct: 65  AAQEAVKRRRRATKKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKKTKD 124

Query: 146 EKKAKKAEVLAKSQKVPGKGNVAK-GPASKGPKLGGGGGKR 186
           EKKAKK E  +K QKV  K N  K   ASKGPK+GGGGGKR
Sbjct: 125 EKKAKKVEFASKQQKV--KANFPKAAAASKGPKVGGGGGKR 163

[Close]

BLAST of Clc10G19040 vs. TAIR 10
Match: AT2G44860.1 (Ribosomal protein L24e family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 27  ELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI 86
           E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 87  AQEAV----KKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 146
            ++      KKR R  R  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 147 TKDEK 148
            K +K
Sbjct: 124 NKQKK 119

[Close]

BLAST of Clc10G19040 vs. TAIR 10
Match: AT2G44860.2 (Ribosomal protein L24e family protein )

HSP 1 Score: 70.1 bits (170), Expect = 2.1e-12
Identity = 48/125 (38.40%), Postives = 69/125 (55.20%), Query Frame = 0


Query: 27  ELCRFSGAKIYPGKGIRFVRGDSQVFLFANSKCKRYFHNRLKPSKLTWTAMYRKQHKKDI 86
           E C F  + IYPG GI+FVR D+++F F  SKC + F  +  P K+ WT  +R  H KD+
Sbjct: 4   EKCWFCSSTIYPGHGIQFVRNDAKIFRFCRSKCHKNFKMKRNPRKVKWTKAFRAAHGKDM 63

Query: 87  AQEAV----KKRRRTTRKPYSRSIVGATLEVIQKKRAEKPEVRDAAREAALREIKERIKK 146
            ++      KKR R  R  Y R++   TL  I+K      ++R  AREA  + I+ R+K 
Sbjct: 64  TKDTTFEFEKKRNRPER--YDRNVTENTLMAIKK----IAKIR-TAREA--KHIENRLKP 119

Query: 147 TKDEK 148
            K +K
Sbjct: 124 NKQKK 119

The following BLAST results are available for this feature:

BLAST of Clc10G19040 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043936.1	5.7e-76	96.34	60S ribosomal protein L24-like [Cucumis melo var. makuwa] >TYK25203.1 60S riboso...	[more]
XP_008442779.1	7.5e-76	98.13	PREDICTED: 60S ribosomal protein L24-like [Cucumis melo]	[more]
KAG7017407.1	1.3e-75	95.71	60S ribosomal protein L24, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022983123.1	2.2e-75	96.88	60S ribosomal protein L24-like isoform X1 [Cucurbita maxima]	[more]
XP_022935353.1	2.2e-75	96.88	60S ribosomal protein L24-like [Cucurbita moschata] >XP_022983124.1 60S ribosoma...	[more]

BLAST of Clc10G19040 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O65743	1.7e-70	88.68	60S ribosomal protein L24 OS=Cicer arietinum OX=3827 GN=RPL24 PE=2 SV=1	[more]
Q9FUL4	2.0e-68	91.03	60S ribosomal protein L24 OS=Prunus avium OX=42229 GN=RPL24 PE=2 SV=1	[more]
P50888	1.9e-66	86.88	60S ribosomal protein L24 OS=Hordeum vulgare OX=4513 GN=RPL24 PE=2 SV=1	[more]
Q42347	8.0e-65	82.50	60S ribosomal protein L24-1 OS=Arabidopsis thaliana OX=3702 GN=RPL24A PE=1 SV=2	[more]
P38666	1.0e-64	84.47	60S ribosomal protein L24-2 OS=Arabidopsis thaliana OX=3702 GN=RPL24B PE=1 SV=2	[more]

BLAST of Clc10G19040 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TPC8	2.8e-76	96.34	60S ribosomal protein L24-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A1S3B6I5	3.6e-76	98.13	60S ribosomal protein L24-like OS=Cucumis melo OX=3656 GN=LOC103486557 PE=3 SV=1	[more]
A0A6J1J6V6	1.0e-75	96.88	60S ribosomal protein L24-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1J6E9	1.0e-75	96.88	60S ribosomal protein L24-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1FAB6	1.0e-75	96.88	60S ribosomal protein L24-like OS=Cucurbita moschata OX=3662 GN=LOC111442264 PE=...	[more]

BLAST of Clc10G19040 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G36620.1	5.7e-66	82.50	ribosomal protein L24	[more]
AT3G53020.1	7.5e-66	84.47	Ribosomal protein L24e family protein	[more]
AT2G44860.1	2.1e-12	38.40	Ribosomal protein L24e family protein	[more]
AT2G44860.2	2.1e-12	38.40	Ribosomal protein L24e family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..157
None	No IPR available	GENE3D	6.10.250.1270		coord: 90..158 e-value: 2.3E-22 score: 80.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..185
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 139..157
None	No IPR available	PANTHER	PTHR10792:SF40	60S RIBOSOMAL PROTEIN L24	coord: 19..185
None	No IPR available	SUPERFAMILY	57716	Glucocorticoid receptor-like (DNA-binding domain)	coord: 27..79
IPR011017	TRASH domain	SMART	SM00746	4TRASH	coord: 29..67 e-value: 3.8E-4 score: 29.8
IPR000988	Ribosomal protein L24e-related	PFAM	PF01246	Ribosomal_L24e	coord: 26..88 e-value: 8.8E-28 score: 96.4
IPR000988	Ribosomal protein L24e-related	PANTHER	PTHR10792	60S RIBOSOMAL PROTEIN L24	coord: 19..185
IPR000988	Ribosomal protein L24e-related	CDD	cd00472	Ribosomal_L24e_L24	coord: 26..77 e-value: 1.2864E-19 score: 76.0718
IPR038630	Ribosomal protein L24e/L24 superfamily	GENE3D	2.30.170.20	Ribosomal protein L24e	coord: 25..85 e-value: 1.9E-32 score: 113.3
IPR023442	Ribosomal protein L24e, conserved site	PROSITE	PS01073	RIBOSOMAL_L24E	coord: 31..48

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G19040.2	Clc10G19040.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0002181	cytoplasmic translation
cellular_component	GO:0022625	cytosolic large ribosomal subunit
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003735	structural constituent of ribosome