Clc10G18535 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G18535
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	F-box/LRR-repeat protein At1g67190-like
Location	ClcChr10: 32336246 .. 32336613 (+)
RNA-Seq Expression	Clc10G18535
Synteny	Clc10G18535

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAATGTTGAAGAAGCTTCGGCTGTGGGGTGCAACATTTGATGATAGTAATGAAGATGCGGATTTGGACTCAATTTCCATCTCTTTCCCAAGTTAAGCTATTTAACTTTGCGTTATTATTTAAGACATGGAACCTTTCATAATAACTTGCAGAAATCGTTTCAGATGGAGAACGGATGGTGCGACGTTAGTGATCACTTCTCTAACTGGGTAGCGAAACTTCTTGAAAGATGTCCTAAGTTGAAGAAATTGATCATTCGTGGGGTTGTATCAGACTTATACCCACAAGCAATGCCAAACCTTAGCACACTTTACCACATCCATCGTTGA

mRNA sequence

ATGGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAATGTTGAAGAAGCTTCGGCTGTGGGGTGCAACATTTGATGATATTAAGCTATTTAACTTTGCACATGGAACCTTTCATAATAACTTGCAGAAATCGTTTCAGATGGAGAACGGATGGTGCGACGTTAGTGATCACTTCTCTAACTGGGTAGCGAAACTTCTTGAAAGATGTCCTAAGTTGAAGAAATTGATCATTCGTGGGGTTGTATCAGACTTATACCCACAAGCAATGCCAAACCTTAGCACACTTTACCACATCCATCGTTGA

Coding sequence (CDS)

ATGGTGTGGCAGAAATTCTATCCTATGATCTCAAAGGCATCAATGTTGAAGAAGCTTCGGCTGTGGGGTGCAACATTTGATGATATTAAGCTATTTAACTTTGCACATGGAACCTTTCATAATAACTTGCAGAAATCGTTTCAGATGGAGAACGGATGGTGCGACGTTAGTGATCACTTCTCTAACTGGGTAGCGAAACTTCTTGAAAGATGTCCTAAGTTGAAGAAATTGATCATTCGTGGGGTTGTATCAGACTTATACCCACAAGCAATGCCAAACCTTAGCACACTTTACCACATCCATCGTTGA

Protein sequence

MVWQKFYPMISKASMLKKLRLWGATFDDIKLFNFAHGTFHNNLQKSFQMENGWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDLYPQAMPNLSTLYHIHR

Homology

[Close]

BLAST of Clc10G18535 vs. NCBI nr
Match: XP_022144792.1 (F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144794.1 F-box/LRR-repeat protein At1g67190-like [Momordica charantia])

HSP 1 Score: 95.1 bits (235), Expect = 3.7e-16
Identity = 54/113 (47.79%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD--------------------IKL-FNFAHGTF 60
           ++W KFY  ISKASMLKKLRLWG  FDD                    + L ++  HG  
Sbjct: 275 IMWPKFYHTISKASMLKKLRLWGVAFDDDDDEVVDLDTISISFPKLSHLSLSYDLKHGAV 334

Query: 61  HNNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDL 87
           H+NLQ+S +MEN      GW D+     NWV KL+E CPKLKKLII GVVS++
Sbjct: 335 HHNLQRSSRMENVTILELGWSDI-----NWVVKLIEICPKLKKLIISGVVSEI 382

[Close]

BLAST of Clc10G18535 vs. NCBI nr
Match: CAB4287182.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 91.3 bits (225), Expect = 5.3e-15
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-IKLFNFAHGTFHNNLQKSFQMENGWCDVSDH 60
           ++W KFY MISK+S LK+LRLWG  FDD  ++ +   GT  + L+    +E GW  +SD 
Sbjct: 194 IMWPKFYNMISKSSNLKRLRLWGVVFDDEDEVVDLETGT--SPLENVVVLELGWTIISDL 253

Query: 61  FSNWVAKLLERCPKLKKLIIRGVVSDL 87
           FS+WVA LLERCP LKKL+I GVVS++
Sbjct: 254 FSDWVAGLLERCPNLKKLVICGVVSEV 278

[Close]

BLAST of Clc10G18535 vs. NCBI nr
Match: TXG73618.1 (hypothetical protein EZV62_002197 [Acer yangbiense])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDDIKL-------------------FNFAHGTFHN 60
           ++W KFY MIS++S LKKLRLW   F++ ++                   ++   G FH 
Sbjct: 275 IIWPKFYQMISRSSKLKKLRLWDVVFEEDEIVDLETIAACFPQLNHLSLNYDLREGVFHY 334

Query: 61  NLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDL 87
           +LQ S  +EN      GW  ++D FS+WV  +L+RCPKLKKL+I GVVS++
Sbjct: 335 SLQGSTNLENLVVLELGWAVINDLFSHWVEGILKRCPKLKKLVISGVVSEI 385

[Close]

BLAST of Clc10G18535 vs. NCBI nr
Match: KAB2631748.1 (F-box/LRR-repeat protein [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDDIKLFNFAHGTFHNNLQKSFQMENGWCDVSDHF 60
           ++W KFY MISK+S LK+LRLWG  FDD            ++L+    +E GW  +S+ F
Sbjct: 275 IMWPKFYNMISKSSNLKRLRLWGVVFDD-------EDEGSSSLENVVVLELGWTIISELF 334

Query: 61  SNWVAKLLERCPKLKKLIIRGVVSD 86
           S+WVA LLERCP LKKL+I GVVS+
Sbjct: 335 SDWVAGLLERCPNLKKLVIYGVVSE 352

[Close]

BLAST of Clc10G18535 vs. NCBI nr
Match: XP_008389342.1 (F-box/LRR-repeat protein At1g67190-like isoform X2 [Malus domestica])

HSP 1 Score: 88.6 bits (218), Expect = 3.4e-14
Identity = 44/85 (51.76%), Postives = 57/85 (67.06%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDDIKLFNFAHGTFHNNLQKSFQMENGWCDVSDHF 60
           ++W KFY MISK+S LK+LRLWG  FDD            ++L+    +E GW  +S+ F
Sbjct: 275 IMWPKFYNMISKSSNLKRLRLWGVVFDD-------EDEGSSSLENVVVLELGWTIISELF 334

Query: 61  SNWVAKLLERCPKLKKLIIRGVVSD 86
           S+WVA LLERCP LKKL+I GVVS+
Sbjct: 335 SDWVAGLLERCPNLKKLVIYGVVSE 352

[Close]

BLAST of Clc10G18535 vs. ExPASy Swiss-Prot
Match: Q9ZW88 (F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 PE=2 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 5.0e-16
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-------------------IKL-FNFAHGTFH 60
           MVW KFY MIS++  LKKLRLW   FDD                   + L ++   G  H
Sbjct: 275 MVWPKFYQMISRSQKLKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAH 334

Query: 61  NNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDLYPQ 90
            +LQ + Q+EN      GW  ++D FS WV +LL RCP LKKLII GVVS+   Q
Sbjct: 335 YSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGVVSETKTQ 389

[Close]

BLAST of Clc10G18535 vs. ExPASy TrEMBL
Match: A0A6J1CTB9 (F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111014389 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 1.8e-16
Identity = 54/113 (47.79%), Postives = 66/113 (58.41%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD--------------------IKL-FNFAHGTF 60
           ++W KFY  ISKASMLKKLRLWG  FDD                    + L ++  HG  
Sbjct: 275 IMWPKFYHTISKASMLKKLRLWGVAFDDDDDEVVDLDTISISFPKLSHLSLSYDLKHGAV 334

Query: 61  HNNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDL 87
           H+NLQ+S +MEN      GW D+     NWV KL+E CPKLKKLII GVVS++
Sbjct: 335 HHNLQRSSRMENVTILELGWSDI-----NWVVKLIEICPKLKKLIISGVVSEI 382

[Close]

BLAST of Clc10G18535 vs. ExPASy TrEMBL
Match: A0A6J5VG72 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45063 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 2.6e-15
Identity = 47/87 (54.02%), Postives = 62/87 (71.26%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-IKLFNFAHGTFHNNLQKSFQMENGWCDVSDH 60
           ++W KFY MISK+S LK+LRLWG  FDD  ++ +   GT  + L+    +E GW  +SD 
Sbjct: 194 IMWPKFYNMISKSSNLKRLRLWGVVFDDEDEVVDLETGT--SPLENVVVLELGWTIISDL 253

Query: 61  FSNWVAKLLERCPKLKKLIIRGVVSDL 87
           FS+WVA LLERCP LKKL+I GVVS++
Sbjct: 254 FSDWVAGLLERCPNLKKLVICGVVSEV 278

[Close]

BLAST of Clc10G18535 vs. ExPASy TrEMBL
Match: A0A5C7IWY3 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002197 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.3e-14
Identity = 45/111 (40.54%), Postives = 65/111 (58.56%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDDIKL-------------------FNFAHGTFHN 60
           ++W KFY MIS++S LKKLRLW   F++ ++                   ++   G FH 
Sbjct: 275 IIWPKFYQMISRSSKLKKLRLWDVVFEEDEIVDLETIAACFPQLNHLSLNYDLREGVFHY 334

Query: 61  NLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDL 87
           +LQ S  +EN      GW  ++D FS+WV  +L+RCPKLKKL+I GVVS++
Sbjct: 335 SLQGSTNLENLVVLELGWAVINDLFSHWVEGILKRCPKLKKLVISGVVSEI 385

[Close]

BLAST of Clc10G18535 vs. ExPASy TrEMBL
Match: A0A6P4AQM1 (F-box/LRR-repeat protein At1g67190 OS=Ziziphus jujuba OX=326968 GN=LOC107432221 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 50/111 (45.05%), Postives = 62/111 (55.86%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-------------------IKL-FNFAHGTFH 60
           ++W KFY MISKAS L++LRLWG  FDD                   + L ++   G  H
Sbjct: 275 IMWPKFYHMISKASRLRRLRLWGVVFDDEDEVVDLETISVCFPRLSQLSLSYDLRDGVLH 334

Query: 61  NNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSD 86
             LQ S  +EN      GW  ++D FS WVA LLERCP LKKL+I GVVS+
Sbjct: 335 CGLQGSSHLENVVLLEVGWTIINDLFSEWVAGLLERCPNLKKLVIYGVVSE 385

[Close]

BLAST of Clc10G18535 vs. ExPASy TrEMBL
Match: A0A2G9HH26 (F-box domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_10536 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.7e-14
Identity = 48/111 (43.24%), Postives = 60/111 (54.05%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD--------------------IKLFNFAHGTFH 60
           ++W KFY MIS++S L+KLRLWG  FDD                       ++      H
Sbjct: 274 IMWAKFYHMISRSSKLRKLRLWGVVFDDEDEVVEIETISSCFPLLSHLALSYDLREAALH 333

Query: 61  NNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSD 86
             LQ SF +EN      GW  +SD FS WV+ LLERCP LKKL+I G+VSD
Sbjct: 334 YGLQGSFVLENVIVLELGWTVISDLFSTWVSGLLERCPLLKKLVIHGLVSD 384

[Close]

BLAST of Clc10G18535 vs. TAIR 10
Match: AT1G67190.1 (F-box/RNI-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-17
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-------------------IKL-FNFAHGTFH 60
           MVW KFY MIS++  LKKLRLW   FDD                   + L ++   G  H
Sbjct: 275 MVWPKFYQMISRSQKLKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAH 334

Query: 61  NNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDLYPQ 90
            +LQ + Q+EN      GW  ++D FS WV +LL RCP LKKLII GVVS+   Q
Sbjct: 335 YSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGVVSETKTQ 389

[Close]

BLAST of Clc10G18535 vs. TAIR 10
Match: AT1G67190.2 (F-box/RNI-like superfamily protein )

HSP 1 Score: 85.1 bits (209), Expect = 3.5e-17
Identity = 50/115 (43.48%), Postives = 62/115 (53.91%), Query Frame = 0


Query: 1   MVWQKFYPMISKASMLKKLRLWGATFDD-------------------IKL-FNFAHGTFH 60
           MVW KFY MIS++  LKKLRLW   FDD                   + L ++   G  H
Sbjct: 275 MVWPKFYQMISRSQKLKKLRLWDVVFDDDDEIIDVESIAAGFSHLTHLSLSYDLKDGAAH 334

Query: 61  NNLQKSFQMEN------GWCDVSDHFSNWVAKLLERCPKLKKLIIRGVVSDLYPQ 90
            +LQ + Q+EN      GW  ++D FS WV +LL RCP LKKLII GVVS+   Q
Sbjct: 335 YSLQGTTQLENVTVLELGWTVINDVFSIWVEELLRRCPNLKKLIIYGVVSETKTQ 389

The following BLAST results are available for this feature:

BLAST of Clc10G18535 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022144792.1	3.7e-16	47.79	F-box/LRR-repeat protein At1g67190-like [Momordica charantia] >XP_022144793.1 F-...	[more]
CAB4287182.1	5.3e-15	54.02	unnamed protein product [Prunus armeniaca]	[more]
TXG73618.1	2.6e-14	40.54	hypothetical protein EZV62_002197 [Acer yangbiense]	[more]
KAB2631748.1	3.4e-14	51.76	F-box/LRR-repeat protein [Pyrus ussuriensis x Pyrus communis]	[more]
XP_008389342.1	3.4e-14	51.76	F-box/LRR-repeat protein At1g67190-like isoform X2 [Malus domestica]	[more]

BLAST of Clc10G18535 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZW88	5.0e-16	43.48	F-box/LRR-repeat protein At1g67190 OS=Arabidopsis thaliana OX=3702 GN=At1g67190 ...	[more]

BLAST of Clc10G18535 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CTB9	1.8e-16	47.79	F-box/LRR-repeat protein At1g67190-like OS=Momordica charantia OX=3673 GN=LOC111...	[more]
A0A6J5VG72	2.6e-15	54.02	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS45063 PE=4 S...	[more]
A0A5C7IWY3	1.3e-14	40.54	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_002197 PE=4 SV=1	[more]
A0A6P4AQM1	1.7e-14	45.05	F-box/LRR-repeat protein At1g67190 OS=Ziziphus jujuba OX=326968 GN=LOC107432221 ...	[more]
A0A2G9HH26	1.7e-14	43.24	F-box domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12...	[more]

BLAST of Clc10G18535 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G67190.1	3.5e-17	43.48	F-box/RNI-like superfamily protein	[more]
AT1G67190.2	3.5e-17	43.48	F-box/RNI-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31639:SF77	F-BOX/LRR-REPEAT PROTEIN	coord: 40..86
None	No IPR available	PANTHER	PTHR31639	F-BOX PROTEIN-LIKE	coord: 40..86
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 6..96

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G18535.1	Clc10G18535.1	mRNA