Clc10G18100 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G18100
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Protein GL2-INTERACTING REPRESSOR 1
Location	ClcChr10: 31966458 .. 31967679 (-)
RNA-Seq Expression	Clc10G18100
Synteny	Clc10G18100

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAGAACAACCCCTTTCTCTCTCTCTTCTTCTTCTTTCTTTTGCCTCCCACTTTCCCACTTTCGTTTCCTTATATAAATCATTCCCCGGAGTCCTATGTTTGCCACAAACTCACTCACATTTTCTCAACTTCCTCCGCCGCCATCACCGCCGTCTGGTTTTCAAAACTTCAAGGTATATATGCAAATGCATATTTCAAAGTTTTTCAACTTCTGTTTTTTCTTTCTCCATTGCTATTTTATGAATTGGGTTTCTTTTTTCTTTTGAATGTTTTGAAATTTATAAGTAGACTATTATATAAAATTGGAGGAAACGACATTACAAGATTCAAGTTCTAACTCAAGCTCTGTTTTTCTTACATTCTGAAACAGGGGAGGAAATGCCGTTTTCCTTTCCTTCCATTGCTCTCGTTAAAATAGCTCAAATTGACTGTTTAAGACTTAAGTTCATAGTTTACGTTTAATTATATTTATAAATTCCGACAAATTTATTTATTTGTTTGTTTTTTTCTATATTAACAGAGGAGAAGAAAAGTAGGAGACAATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAGCTAAACCTGTCGCCGCCGCGGCCACATCCGATGGTGTCATCGCCGAGCCGATCAGCGACAGCGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTCGGAGCTAAATCAGGAAGACGGCGGCGCCGCCCTTCGATACTCAAGCAGCCCAGAAGCTACATCAATGGTGCTGGTGGGGTGCCCTCGGTGCCTCATGTACGTGATGCTGTCGGAGAACGAACCCAAATGCCCAAAATGCAAGAGCTCTGTTTTGCTTGATTTTCTCCATGACGGCGCCGCCTCAGCTCCGCCGTCCACGACCGCCGCCAGGAAGATCTAGAGACAGAGAAAAATAAAATTACCAAATCTAAACTATCTTCAACTTCCATTTGCCTGTTAAATGTCTTTTTTATTTTTATTTTTTTTAATTATTATTTTTTTCTTTTTCTTTTTTTTAGATGTGAAATTGAAAAGAAAAAGGTCTAGTTTTGTTGGGAGAAATTGGAAGCCTATCTTCTTATATAGCACGGAAGTGGCCATTTTTCTTTTTTCTGAAAATAGAGTTGAGAAGATGAATTTATATTAATTTATTTAGATATTGAGCTGAATTGAAGCCTTTTTTTTTCTAATTATTATTATTATGGTTTAC

mRNA sequence

AAAAAAAAAAAGAACAACCCCTTTCTCTCTCTCTTCTTCTTCTTTCTTTTGCCTCCCACTTTCCCACTTTCGTTTCCTTATATAAATCATTCCCCGGAGTCCTATGTTTGCCACAAACTCACTCACATTTTCTCAACTTCCTCCGCCGCCATCACCGCCGTCTGGTTTTCAAAACTTCAAGAGGAGAAGAAAAGTAGGAGACAATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAGCTAAACCTGTCGCCGCCGCGGCCACATCCGATGGTGTCATCGCCGAGCCGATCAGCGACAGCGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTCGGAGCTAAATCAGGAAGACGGCGGCGCCGCCCTTCGATACTCAAGCAGCCCAGAAGCTACATCAATGGTGCTGGTGGGGTGCCCTCGGTGCCTCATGTACGTGATGCTGTCGGAGAACGAACCCAAATGCCCAAAATGCAAGAGCTCTGTTTTGCTTGATTTTCTCCATGACGGCGCCGCCTCAGCTCCGCCGTCCACGACCGCCGCCAGGAAGATCTAGAGACAGAGAAAAATAAAATTACCAAATCTAAACTATCTTCAACTTCCATTTGCCTGTTAAATGTCTTTTTTATTTTTATTTTTTTTAATTATTATTTTTTTCTTTTTCTTTTTTTTAGATGTGAAATTGAAAAGAAAAAGGTCTAGTTTTGTTGGGAGAAATTGGAAGCCTATCTTCTTATATAGCACGGAAGTGGCCATTTTTCTTTTTTCTGAAAATAGAGTTGAGAAGATGAATTTATATTAATTTATTTAGATATTGAGCTGAATTGAAGCCTTTTTTTTTCTAATTATTATTATTATGGTTTAC

Coding sequence (CDS)

ATGAGCAGAAGAAGCAGTGGAAGTGTTCCAAAGCTTGAGTTGAAGCTAAACCTGTCGCCGCCGCGGCCACATCCGATGGTGTCATCGCCGAGCCGATCAGCGACAGCGTCGCCCACATCGCCACCGAGCTCTTGCGTGTCGTCGGAGCTAAATCAGGAAGACGGCGGCGCCGCCCTTCGATACTCAAGCAGCCCAGAAGCTACATCAATGGTGCTGGTGGGGTGCCCTCGGTGCCTCATGTACGTGATGCTGTCGGAGAACGAACCCAAATGCCCAAAATGCAAGAGCTCTGTTTTGCTTGATTTTCTCCATGACGGCGCCGCCTCAGCTCCGCCGTCCACGACCGCCGCCAGGAAGATCTAG

Protein sequence

MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI

Homology

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BLAST of Clc10G18100 vs. NCBI nr
Match: XP_008442891.1 (PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 uncharacterized protein E6C27_scaffold236G001730 [Cucumis melo var. makuwa] >TYK04712.1 uncharacterized protein E5676_scaffold23737G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 229.6 bits (584), Expect = 1.5e-56
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+VSSPSRSAT SPTSPPSSCVSSELNQ+DGGAALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

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BLAST of Clc10G18100 vs. NCBI nr
Match: XP_031737841.1 (uncharacterized protein LOC101204832 [Cucumis sativus] >KGN59178.1 hypothetical protein Csa_000798 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 4.3e-56
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+VSSPSRSAT SPTSPPSSCVSSELNQ+DGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

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BLAST of Clc10G18100 vs. NCBI nr
Match: XP_038905681.1 (uncharacterized protein LOC120091651 [Benincasa hispida])

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 113/120 (94.17%), Postives = 116/120 (96.67%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+ SSPSRSAT SPTSPPSSCVSSELNQ+DGGA+LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLASSPSRSATVSPTSPPSSCVSSELNQDDGGASLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPS  AARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSRAAARKI 120

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BLAST of Clc10G18100 vs. NCBI nr
Match: XP_023528090.1 (early nodulin-20-like isoform X1 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPR HP+ SSPSRSAT SPTSPPSSCVS ELNQ+D GAALR
Sbjct: 33  MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSGAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTGAARKM 152

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BLAST of Clc10G18100 vs. NCBI nr
Match: XP_023528091.1 (uncharacterized protein LOC111791110 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 213.4 bits (542), Expect = 1.1e-51
Identity = 110/120 (91.67%), Postives = 113/120 (94.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPR HP+ SSPSRSAT SPTSPPSSCVS ELNQ+D GAALR
Sbjct: 33  MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSGAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTGAARKM 152

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BLAST of Clc10G18100 vs. ExPASy Swiss-Prot
Match: Q9FNI1 (Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 5.1e-36
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPP--RPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAA 60
           MSRRS    PKLELKLNLSPP      MV SPSRSAT SPTSPPSSCVSSE+NQ++   +
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE--PS 60

Query: 61  LRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAA 118
           +RYS+SPE TSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLH+ A +A  +  AA
Sbjct: 61  VRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAA 113

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BLAST of Clc10G18100 vs. ExPASy Swiss-Prot
Match: Q9SRN4 (Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.4e-24
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRR+    PKLEL+LNLSPP       S  RS   S T+ PSSCVSSE NQE+      
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE------ 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTA 117
              +   TSMVLVGCPRCLMYVMLS+++PKCPKCKS+VLLDFL + A +A  +T A
Sbjct: 61  ---NETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAA 106

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BLAST of Clc10G18100 vs. ExPASy Swiss-Prot
Match: Q9FMS4 (Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 GN=SIED1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.8e-09
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 12  LELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALRYSSSPEATSMV 71
           L+LKLN+SP     +++  S S+  S              + +GG         EA SMV
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCS-------------EEAEGGGG-------EAKSMV 70

Query: 72  LVGCPRCLMYVMLS-ENEPKCPKCKSSVLLDFL 104
           +VGCP C+MY++ S EN+P+CP+C S VLLDFL
Sbjct: 71  VVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

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BLAST of Clc10G18100 vs. ExPASy TrEMBL
Match: A0A5A7TLW3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold23737G00010 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.1e-57
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+VSSPSRSAT SPTSPPSSCVSSELNQ+DGGAALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of Clc10G18100 vs. ExPASy TrEMBL
Match: A0A1S3B7J8 (uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=4 SV=1)

HSP 1 Score: 229.6 bits (584), Expect = 7.1e-57
Identity = 117/120 (97.50%), Postives = 119/120 (99.17%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+VSSPSRSAT SPTSPPSSCVSSELNQ+DGGAALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of Clc10G18100 vs. ExPASy TrEMBL
Match: A0A0A0LBI1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 116/120 (96.67%), Postives = 118/120 (98.33%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPRPHP+VSSPSRSAT SPTSPPSSCVSSELNQ+DGGA LR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRPHPLVSSPSRSATVSPTSPPSSCVSSELNQDDGGAGLR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120

[Close]

BLAST of Clc10G18100 vs. ExPASy TrEMBL
Match: A0A6J1F871 (uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC111441745 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 1.2e-51
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKLELKLNLSPPR HP+ SSPSRSAT SPTSPPSSCVS ELNQ+D  AALR
Sbjct: 1   MSRRSSGSVPKLELKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARK+
Sbjct: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKL 120

[Close]

BLAST of Clc10G18100 vs. ExPASy TrEMBL
Match: A0A6J1J6Y2 (uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787 PE=4 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 1.5e-51
Identity = 109/120 (90.83%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRRSSGSVPKL+LKLNLSPPR HP+ SSPSRSAT SPTSPPSSCVS ELNQ+D  AALR
Sbjct: 33  MSRRSSGSVPKLDLKLNLSPPRQHPLGSSPSRSATLSPTSPPSSCVSLELNQDDSSAALR 92

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAARKI 120
           YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAAS PPST AARKI
Sbjct: 93  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASGPPSTAAARKI 152

[Close]

BLAST of Clc10G18100 vs. TAIR 10
Match: AT5G06270.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 151.8 bits (382), Expect = 3.6e-37
Identity = 85/119 (71.43%), Postives = 97/119 (81.51%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPP--RPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAA 60
           MSRRS    PKLELKLNLSPP      MV SPSRSAT SPTSPPSSCVSSE+NQ++   +
Sbjct: 1   MSRRS----PKLELKLNLSPPTSSQRRMVRSPSRSATTSPTSPPSSCVSSEMNQDE--PS 60

Query: 61  LRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTAA 118
           +RYS+SPE TSMVLVGCPRCLMYVMLSE++PKCPKCKS+VLLDFLH+ A +A  +  AA
Sbjct: 61  VRYSTSPETTSMVLVGCPRCLMYVMLSEDDPKCPKCKSTVLLDFLHENATNANANAAAA 113

[Close]

BLAST of Clc10G18100 vs. TAIR 10
Match: AT3G11600.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G06270.1); Has 171 Blast hits to 171 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 171; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 112.5 bits (280), Expect = 2.4e-25
Identity = 67/116 (57.76%), Postives = 79/116 (68.10%), Query Frame = 0


Query: 1   MSRRSSGSVPKLELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALR 60
           MSRR+    PKLEL+LNLSPP       S  RS   S T+ PSSCVSSE NQE+      
Sbjct: 1   MSRRNKNG-PKLELRLNLSPPPSQASQMSLVRSPNRSNTTSPSSCVSSETNQEE------ 60

Query: 61  YSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLLDFLHDGAASAPPSTTA 117
              +   TSMVLVGCPRCLMYVMLS+++PKCPKCKS+VLLDFL + A +A  +T A
Sbjct: 61  ---NETITSMVLVGCPRCLMYVMLSDDDPKCPKCKSTVLLDFLQENAFAATTATAA 106

[Close]

BLAST of Clc10G18100 vs. TAIR 10
Match: AT5G22270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 136 Blast hits to 136 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 136; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-10
Identity = 38/93 (40.86%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 12  LELKLNLSPPRPHPMVSSPSRSATASPTSPPSSCVSSELNQEDGGAALRYSSSPEATSMV 71
           L+LKLN+SP     +++  S S+  S              + +GG         EA SMV
Sbjct: 11  LDLKLNISPSLDSSLLTESSSSSLCS-------------EEAEGGGG-------EAKSMV 70

Query: 72  LVGCPRCLMYVMLS-ENEPKCPKCKSSVLLDFL 104
           +VGCP C+MY++ S EN+P+CP+C S VLLDFL
Sbjct: 71  VVGCPNCIMYIITSLENDPRCPRCNSHVLLDFL 83

[Close]

BLAST of Clc10G18100 vs. TAIR 10
Match: AT3G52561.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G11600.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.6 bits (109), Expect = 1.6e-05
Identity = 26/73 (35.62%), Postives = 43/73 (58.90%), Query Frame = 0


Query: 32  RSATASPTSPPSSCV--SSELNQEDGGAALRYSSSPEATSMVLVGCPRCLMYVMLSENEP 91
           RS ++  +S  +SC+  + E+ +E    A  +    EA  MV++GC  C+MYVM+ +   
Sbjct: 30  RSPSSDTSSSQNSCLTRTEEVKEE---VASSWVDEEEAPEMVVMGCRSCMMYVMVLQERQ 89

Query: 92  KCPKCKSSVLLDF 103
           +CPKCK + L+ F
Sbjct: 90  RCPKCKCTDLIFF 99

[Close]

BLAST of Clc10G18100 vs. TAIR 10
Match: AT1G16500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G79160.1); Has 136 Blast hits to 134 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 131; Viruses - 1; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 44.7 bits (104), Expect = 6.2e-05
Identity = 38/104 (36.54%), Postives = 52/104 (50.00%), Query Frame = 0


Query: 12  LELKL---NLSPPRPHPMVS-SPSRSATASPTSPPSSCVSSELNQ-----------EDGG 71
           LELKL   ++S P P P+ S SP++S +   +      V   L +           ED G
Sbjct: 142 LELKLVPSSISRPLPPPLSSFSPNQSLSYLSSVCTLDKVKLALERAEKDTKKRQSPEDDG 201

Query: 72  AALRYSSSPEATSMVLVGCPRCLMYVMLSENEPKCPKCKSSVLL 101
                +S+  A S V  GCP CL YV +++N PKCP+C S V L
Sbjct: 202 VYDGTASATVAASQVAAGCPGCLSYVFVAKNNPKCPRCHSFVPL 245

The following BLAST results are available for this feature:

BLAST of Clc10G18100 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008442891.1	1.5e-56	97.50	PREDICTED: uncharacterized protein LOC103486655 [Cucumis melo] >KAA0043838.1 unc...	[more]
XP_031737841.1	4.3e-56	96.67	uncharacterized protein LOC101204832 [Cucumis sativus] >KGN59178.1 hypothetical ...	[more]
XP_038905681.1	1.8e-54	94.17	uncharacterized protein LOC120091651 [Benincasa hispida]	[more]
XP_023528090.1	1.1e-51	91.67	early nodulin-20-like isoform X1 [Cucurbita pepo subsp. pepo]	[more]
XP_023528091.1	1.1e-51	91.67	uncharacterized protein LOC111791110 isoform X2 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc10G18100 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FNI1	5.1e-36	71.43	Protein GL2-INTERACTING REPRESSOR 1 OS=Arabidopsis thaliana OX=3702 GN=GIR1 PE=1...	[more]
Q9SRN4	3.4e-24	57.76	Protein GL2-INTERACTING REPRESSOR 2 OS=Arabidopsis thaliana OX=3702 GN=GIR2 PE=1...	[more]
Q9FMS4	1.8e-09	40.86	Protein salt-induced and EIN3/EIL1-dependent 1 OS=Arabidopsis thaliana OX=3702 G...	[more]

BLAST of Clc10G18100 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TLW3	7.1e-57	97.50	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B7J8	7.1e-57	97.50	uncharacterized protein LOC103486655 OS=Cucumis melo OX=3656 GN=LOC103486655 PE=...	[more]
A0A0A0LBI1	2.1e-56	96.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G778340 PE=4 SV=1	[more]
A0A6J1F871	1.2e-51	90.83	uncharacterized protein LOC111441745 OS=Cucurbita moschata OX=3662 GN=LOC1114417...	[more]
A0A6J1J6Y2	1.5e-51	90.83	uncharacterized protein LOC111481787 OS=Cucurbita maxima OX=3661 GN=LOC111481787...	[more]

BLAST of Clc10G18100 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G06270.1	3.6e-37	71.43	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT3G11600.1	2.4e-25	57.76	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response...	[more]
AT5G22270.1	1.3e-10	40.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G52561.1	1.6e-05	35.62	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G16500.1	6.2e-05	36.54	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 28..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	PANTHER	PTHR33177:SF47	BNAC02G02040D PROTEIN	coord: 3..116
None	No IPR available	PANTHER	PTHR33177	PUTATIVE-RELATED	coord: 3..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G18100.1	Clc10G18100.1	mRNA