Clc10G17860 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G17860
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	mediator of RNA polymerase II transcription subunit 27
Location	ClcChr10: 31777643 .. 31783294 (-)
RNA-Seq Expression	Clc10G17860
Synteny	Clc10G17860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GAAAAAACAAAAAACCTATAAAATAAAAGGAAAAGAAATTATATCCTAAATAGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAAGAAATTTAGAGCATATGTATATAGATCCATCCTTTTCTATATTCTTATAGTGGAATCGGAGTAAAGAAATTCGAACACAAATTTCGTGATTATTAATATATTAATAAATATAGTTAAATCGAAATAAAAAAACTTCAATACACATCTCGCAATTATTAATATATTAATAAATTAATTCAGTTAGGTTTGGTTTAGTTATTTTACTATAAAAACTATAAACGTTATAATATTTATGCTATATGAGTTGGTGTAAAAACAATAAATAGAAGGCGATTATTATTATTATTATTTTTGTTGAAATTAATAATAATAATTGAAGAAAAGAAAAGGCAGGGTGGAAATTCAGAAATTAGCAGTCGTCTTGCTCACACCTCCGAAGGCTTTTGGGGAAAGAAATTGGAAGCAGTGAACGTCGGCGGAGGGTAAATGCGACAAACTCAGCAGCCATCGCAGGGCCAGACTGCGACGGTGAGCCCTAATACTGCTCCCCCTCACTCTCCCGCCTCTGCGGACGACGCTCCTCCCAAGCAGGTCGCACTCGCCATGGACAGACTTGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCTTGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAACCACTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGTATTCTGCTTCACTTCTTTTTTAGGGTTATGTTTTCGATTTGAAGAAGGGATTTCATTTTGATGGATTAGATCATACAATTGAAAACAAGGGGTTTACATTTGCGAGATTTTAATTGTTTTACTTCTAATTTTATTAGGAAAGCAACTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGCCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTTGTTTAGACACTTTCCATATACCTATCCAAGAACATAGCTGCTTTAGGCCATGAATACGGAATAACTACTTGAATTTGGAAGTTTACTTGACATTTCTTCATACTGCTTCTTGGTAATTTAGACTCGACTGGCTAAATTAGAGTTCCCAAATTCATTTTTTTCAAAGAGATATCAGGAACCTTAGCTTCCAGGCTCGGCTTGACAATAACATTAAATACCAAATAATTCGATCTAGTATTTTGCATAAATGTATGTAAGTTTCCATTCTTTGACAGATAAGGAAGCATTGGAGGTTATAGCTGTTTTAGGGTTAATTAGGGATATTTAGATTGGCCAGGGAAGAAGGAGTTCTCGGTTTTGGATACCTAATCATTTTTCTCCTAGTCCTTATGTGCCTTGCTTCCTCCCCAAAAGTCCCTTCATTTTCCTCTCTTTGGATTGTTACAATTCTAAAGAAGGTCAAAGTTTTGCCGGGCAGGTTTTGCCCGACAAAGTCAACACTTCGGATCACATTTTGTGGCATTCTTTGTTGTGTTTTGGTCCTCAATGGCACATCTTGTGCAGAGGAGCTTTGGAGGATGTTGATAATTTGTTTTGGAGTTGCCAATTTGTGCAATTGATTTGGGACCCTTTTTGGACTCCTTTGAGGCTTCTGTTGTTAGTAATAGGACATGCAGTGCCATGATGGAGGAGTAATGTTGTTCCCTCCCTTCAAGGATAAATAAAAAGTTATTTGGCAAGCTTTTTCCCCCTAAATCTAGTGGGTATATTCGGCTTGAAAAAAAAAAAGAAGAGGATCTTTGAGGGTTTGATCGGTATTTGGATGTCTTTTGGGAACATGTTAGGTTGTTTAATACCTGTGATGGCTCTAAGGCTATTAGGAACCAAGATAGTATGAGCTAACTTTGTCCCACATTGATTAGAATGGGATGACCAATGTGGTACTTAAGTGGCTTGGCTCTCCCACCTCAATTGCTAGGTTTTGGGGTGTGGTTCTCCAAGGTGTTTAAGTACCTAACAAAGGTCTGTAATTATCAGTTAGGTATTATTCTTTTAGATTTTAGACCTTTTTTGGGGGGTTGTTCTTGTCTGGTCCGTCTTTTTGTATGCCCCTTCCTTTAATGTTACTCAATGAAAGTTCTATATTTTATAAAATAAAAAGGGTCTGTAATTATCAGTTAGGTATTATTCTTTTAGATTTTAGACCTTTTTTGGGGGGTTGTTCTCGTGTGGTCCGTCTTTTTGTATGCCCCTTCCTTTAATGTTACTCAATAAAAGTTCTATATTTTATAAAATAAAAAAAGAAATAATAATAATATTAATAAGAACCTAAGTTATAACATCTATCATGAATAGATGCCTTGTGGAAATGAAATTTCATAGTTAACTGGCTACCATTAGGTTATGGATGGTGTCAAACAACACATATTATTTTTATTTTTTATGTTCATTTTTGTGTTGTAACCAAATGGTAAACGCCCCTGATCTAATGAGATGATCATATAGTTACATTGCCTTTTTCACCTACAAAGGGTTTTAATTATTGAACATATTTTCAAATACAGAGAGATGAAGTTGGCTAATGAATTGACCTTGAAAATGTTTTTGCTTCTACTTTACTGTAGGACAGTTTCAGTTGCCTTGAAATTTTAATATGATAGGCAAAATCATGTAATTTAAAATCTGACTCCCATAAGTCCAGGTGTTTTACTGATGCTTACTTGTTAATAGGTTAGCTTTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAACGAGCCTGCGCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTAATGATTCTAGATCACTCCCAGATATTCTATCCTGTATGGAAAAGGAAGTGCCGGAGCTTAAGATTTTCACTTATGAAAGGTTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTTGCTTTCTTTTCTCCTGATGAGGTACTCTATTTTGTGCCTAAGTATTCATTGTCAAATTTTTTTACTCATTAATTCTGTTGTACTACTGACAACAAGATAATTCTTTCAATGAATTGTGTAATTGCCTGACCATGCTATGGGAGTTTCTTTACTCCTGATATGAGGTACTTTACCTGCCAGTTACATGGTCTAAAGATATGCAACCAATTGATTTATGAAATAGTTGGTGTGAGTCTATAATACTTTGTCATAATCTTTAATGACCTTTACTAAGTTCTATTTATATCATCGGATATCATTGTATCATTGTACATAATCGAATTTTAGCGGATGTGAGACTAACAGGCATGGTTTTCATTACAAATGCAATTATACTTTCTTAGTTTATTTTTCTAAAATTATTGCCTGTACTCCAAGCCTCCACCTGGTGCTGATTCATTGCACTTGTTCCCACTGATTTTCGTTGTATCTTACTTAAGTTGGTTCTTATCCAAAAAAAAAACTTAAGCACTTAAGGTGGTAACTGTTGCAGTTTATTTATAACTTTTTGTGTTGCAACAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGTACCCATCACTTCGCTCATAACGTTTACTTTCATTCACATTTATGGAGGTTGCTTTCTGTCAGAGATGATAATTTCATTTTATCTTGATGCAGGAGCATGCTGCCACGGTGCTGCAATATTTTCTTGGAAATCTCGCAGAAGCAGCTCTATATCCTCTATTGGTAACATAGTCATTGAATTTGTGGACATGACTTATTCTTTCTCCATTCCATTTAAAATCCTCGTCAATTAATGTTTGGTACTTTCTTGTAGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGGTGCGTCTAGGTATTTTCAGTGCTTCCACATTTGGTTTTGTATGGATTTGACATTTTAATGGTGTGTTAATCGGGTCTTGCAGTAAATGTGGACGGCTGCTATCAGTAAACAAACAATCCGATTTACTGTTACCTCCTGCAGTTCGCCCGTACAAGCAGTTTTGTACATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAAAGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGGTTGCTTCTCAGAAGAACTGTAGTCCCACCTAGTCGTACAGGTACAGCTGGAATACACAAGTTCAACTTATCAATTGCTTGATCATTTTTTAAGCCTCTAGTTGATTATGACTTTCTTTTATCTGGTAATAGTGTGCAGTGTGCACCAATTCCTATTAATCAACGATTGCCAGCATTAAAATCTGCTAGGCTCATTTTTTCATCGTCCATACGACTTTTAGGCCCTGTGTGTTTAGCTGTTACTAAATAGATACTGAACATTGCAAAGGCGCCCATCCCTGTCTCTTTTATTGTGCTATTCGGTTGGAATGTCTTGAATCTATTTGGTTGGAATGTCTTGAATCTGTTATCTTACGCTTCGAATAACCAAGCACGGGGTGCTCATATATAAACTCTCTAATTCCATGGCGTCTCTGTATCTATATTTTTCTAATGATCCCCTCAAATAATAAATTGTTCTCCATTTGCCCGTGGACATAGCTAACATATTGTCAATGAACTGCATAAAACCTTGTATCGTTCTCTGTTGTTTACGCTTTCTTTGCTTGTCGATTTTGTTTATGTCAAAACACATTCTTTGCCTCTTACCTGCATTGAACCTTGTTTTTCTCAACCTCACTAGTTTAATGGTTGGTTATAATTCGTTTCAGGACCGTGTGGACTCTGCTTCACATGTTATACAACAGTATGCTTAGAATCAGAAGAGGGCATAGGCTGCTTTGCTATCTTGTGCTGCCTTCGGTGATTCGCTAGCATGTGTTGCAATTATATGACAAAGGAGTGATTCATATTATTCGTAGGTACCAATCCCAATGCTGAAAGAGCCATCCAGTTTCTGATGTGGTTAGTTTCTGTTGGCTCAAGTAGCTTGCCATTGTCAAGGCGAGGGAAAGGTACATTCATTTGCTTTGATTTGAGCAATTGCTAGTTTTTCTCAATCTGCTCAGAAGATAACTTTTCATTTTTGAATCATTTGTATCTTGCCCCTTCAGATTCAAGTAAGGATGTTAGCCTTTTATTAGTACGAGCGGGTGTATGTACAATACTCGTAAGTTTGGATCAACATAAGAAAAGAGCGAAAAGAATTATAGTAGTCAACATTTCAGTGGACTTTCTTTTAACCTACATCGTAGATTTAGTTATGGGAAGCATTTTGTTGTGTTATTAATTATTCTTGAATATTGAATAATAGTTTGAT

mRNA sequence

GAAAAAACAAAAAACCTATAAAATAAAAGGAAAAGAAATTATATCCTAAATAGTGAAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTAAAAGAAATTTAGAGCATATGTATATAGATCCATCCTTTTCTATATTCTTATAGTGGAATCGGAGTAAAGAAATTCGAACACAAATTTCGTGATTATTAATATATTAATAAATATAGTTAAATCGAAATAAAAAAACTTCAATACACATCTCGCAATTATTAATATATTAATAAATTAATTCAGTTAGGTTTGGTTTAGTTATTTTACTATAAAAACTATAAACGTTATAATATTTATGCTATATGAGTTGGTGTAAAAACAATAAATAGAAGGCGATTATTATTATTATTATTTTTGTTGAAATTAATAATAATAATTGAAGAAAAGAAAAGGCAGGGTGGAAATTCAGAAATTAGCAGTCGTCTTGCTCACACCTCCGAAGGCTTTTGGGGAAAGAAATTGGAAGCAGTGAACGTCGGCGGAGGGTAAATGCGACAAACTCAGCAGCCATCGCAGGGCCAGACTGCGACGGTGAGCCCTAATACTGCTCCCCCTCACTCTCCCGCCTCTGCGGACGACGCTCCTCCCAAGCAGGTCGCACTCGCCATGGACAGACTTGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCTTGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAACCACTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGAAAGCAACTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGCCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAACGAGCCTGCGCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTAATGATTCTAGATCACTCCCAGATATTCTATCCTGTATGGAAAAGGAAGTGCCGGAGCTTAAGATTTTCACTTATGAAAGGTTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTTGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAATATTTTCTTGGAAATCTCGCAGAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGGCTGCTATCAGTAAACAAACAATCCGATTTACTGTTACCTCCTGCAGTTCGCCCGTACAAGCAGTTTTGTACATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAAAGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGGTTGCTTCTCAGAAGAACTGACCGTGTGGACTCTGCTTCACATGTTATACAACAGTATGCTTAGAATCAGAAGAGGGCATAGGCTGCTTTGCTATCTTGTGCTGCCTTCGGTGATTCGCTAGCATGTGTTGCAATTATATGACAAAGGAGTGATTCATATTATTCGTAGGTACCAATCCCAATGCTGAAAGAGCCATCCAGTTTCTGATGTGGTTAGTTTCTGTTGGCTCAAGTAGCTTGCCATTGTCAAGGCGAGGGAAAGGTACATTCATTTGCTTTGATTTGAGCAATTGCTAGTTTTTCTCAATCTGCTCAGAAGATAACTTTTCATTTTTGAATCATTTGTATCTTGCCCCTTCAGATTCAAGTAAGGATGTTAGCCTTTTATTAGTACGAGCGGGTGTATGTACAATACTCGTAAGTTTGGATCAACATAAGAAAAGAGCGAAAAGAATTATAGTAGTCAACATTTCAGTGGACTTTCTTTTAACCTACATCGTAGATTTAGTTATGGGAAGCATTTTGTTGTGTTATTAATTATTCTTGAATATTGAATAATAGTTTGAT

Coding sequence (CDS)

ATGCGACAAACTCAGCAGCCATCGCAGGGCCAGACTGCGACGGTGAGCCCTAATACTGCTCCCCCTCACTCTCCCGCCTCTGCGGACGACGCTCCTCCCAAGCAGGTCGCACTCGCCATGGACAGACTTGGCCACGCCGCTCGTCTCATCGCCGACATCAGGCTTGGCGCTGATCGCCTTCTCGAAGCCCTCTGCGTCACTGCCCAGCCTCATCAAACCACTAAGCCCCTCCACTTGTTTCAGAAAGAAGACGCTTCCATGCGCCAACACCTCCTTGACCTTCGTGCAGTTGGAAAGCAACTTGAAGAGTCTGGTGTTCTCAGTGAATCTCTTCTTTCGAGAAGTAATTCTTGGGGTCTACATATGCCTTTAGTGTGTCCTGATGGCGCAGTGGTTGCTTATGCTTGGAAACGCCAACTAGCTGGCCAGGCTGGTGCATCTGCAGTTGACCGAACCAGGTTAGCTTTAAAGGCCTTCACTGACCAGAAAAGACGGTTTTTCCCTCATCTTGAAGATGAAAATGGGTCAAATAACGAGCCTGCGCTGAAGAAGCCTTGTTTTTCTCATGGAGTGACAGATGTCAAACAAAATGAGCTTAATGATTCTAGATCACTCCCAGATATTCTATCCTGTATGGAAAAGGAAGTGCCGGAGCTTAAGATTTTCACTTATGAAAGGTTGGACTGGTTAAAACAAGCTTCAGCCCTTCCCTCTCAAGCAAATGAGAATTCAATAGGAGCATTGAAAGAACATAGCTATCATAGTCCTAGGATGAGCCCCGGATCACTTGGTGCTACTCCCACAGATAAAGCTGGTGTGATTGAGTTGGTCATTCCTTCGGTCTTTAGAGCCGTAGTATCACTGCATCCAGTTGGTTCTGTTGAACCAGATGCTGTTGCTTTCTTTTCTCCTGATGAGAGAGGCAGCCATGTACATGCCAGGGGTTTTTCAAATTATCATTTGTTCAGACATGTTACGGAGCATGCTGCCACGGTGCTGCAATATTTTCTTGGAAATCTCGCAGAAGCAGCTCTATATCCTCTATTGCTTTGGATCTGCAGCTACCAAAATTTATTTTCAAAAGCTTGTAGTAAATGTGGACGGCTGCTATCAGTAAACAAACAATCCGATTTACTGTTACCTCCTGCAGTTCGCCCGTACAAGCAGTTTTGTACATCAAAAATCTCATCAGCTGTGCCCATAACCTCATTGAAAGACCAGAAGTTGGATCCTGTTCAAGCTTTCCACATTGGTTGCTTCTCAGAAGAACTGACCGTGTGGACTCTGCTTCACATGTTATACAACAGTATGCTTAGAATCAGAAGAGGGCATAGGCTGCTTTGCTATCTTGTGCTGCCTTCGGTGATTCGCTAG

Protein sequence

MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCFSEELTVWTLLHMLYNSMLRIRRGHRLLCYLVLPSVIR

Homology

[Close]

BLAST of Clc10G17860 vs. NCBI nr
Match: XP_038904949.1 (mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904950.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904951.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_038904952.1 mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida])

HSP 1 Score: 809.7 bits (2090), Expect = 1.3e-230
Identity = 407/424 (95.99%), Postives = 415/424 (97.88%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQQP+QGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNELNDSRSL +IL+CMEKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELNDSRSLSEILTCMEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIG LKEHSYHSPRMSPGSLGATP DKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NENSIGVLKEHSYHSPRMSPGSLGATPVDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYFLGN A+AALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFLGNQAKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCG+LLSVNKQSDLLLPPAVRPYKQFC SK SS+VPITSLKDQKLD VQAFHI CF
Sbjct: 361 KACSKCGQLLSVNKQSDLLLPPAVRPYKQFCASKNSSSVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEL 425
           S EL
Sbjct: 421 SGEL 424

[Close]

BLAST of Clc10G17860 vs. NCBI nr
Match: XP_008442914.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo])

HSP 1 Score: 786.2 bits (2029), Expect = 1.5e-223
Identity = 396/424 (93.40%), Postives = 407/424 (95.99%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQPSQGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSL DILSC+EKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Sbjct: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGR LSVNKQSDLLLPP VRPYKQFC SK SSAVPITSLKDQKLD VQAFHI CF
Sbjct: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEL 425
           SEE+
Sbjct: 421 SEEI 421

[Close]

BLAST of Clc10G17860 vs. NCBI nr
Match: XP_004136512.1 (mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativus])

HSP 1 Score: 784.6 bits (2025), Expect = 4.5e-223
Identity = 397/424 (93.63%), Postives = 405/424 (95.52%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQPSQGQTATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSL DILSCMEKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGR LSVNKQSDLLLPPAVRPYKQFC SK SS VPITSLKDQKLD VQAFHI CF
Sbjct: 361 KACSKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEL 425
           SEE+
Sbjct: 421 SEEI 421

[Close]

BLAST of Clc10G17860 vs. NCBI nr
Match: XP_022940393.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata])

HSP 1 Score: 763.5 bits (1970), Expect = 1.1e-216
Identity = 384/422 (91.00%), Postives = 401/422 (95.02%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ ELNDS SL DIL+CMEKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISS VP+TSLKDQKLD VQAFHIGCF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420

Query: 421 SE 423
           +E
Sbjct: 421 TE 422

[Close]

BLAST of Clc10G17860 vs. NCBI nr
Match: XP_023539656.1 (mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 761.9 bits (1966), Expect = 3.1e-216
Identity = 384/422 (91.00%), Postives = 401/422 (95.02%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DENGSN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDENGSNIEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ ELNDS SL DIL+C+EKEVP+LKIFTYERLDWLKQASAL SQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCLEKEVPDLKIFTYERLDWLKQASALSSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISSAVP+TSLKDQKLD VQAFHIGCF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420

Query: 421 SE 423
           +E
Sbjct: 421 TE 422

[Close]

BLAST of Clc10G17860 vs. ExPASy Swiss-Prot
Match: Q8RWM3 (Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana OX=3702 GN=MED27 PE=1 SV=1)

HSP 1 Score: 450.7 bits (1158), Expect = 2.0e-125
Identity = 241/406 (59.36%), Postives = 298/406 (73.40%), Query Frame = 0


Query: 18  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPL 77
           N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  T  PL
Sbjct: 12  NPAEAANNQSESDAPPKQVAQAMERLNQAARVIADIRLGADRILEAMFVASQPRHTDMPL 71

Query: 78  HLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWK 137
            LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWK
Sbjct: 72  QLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWK 131

Query: 138 RQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQN 197
           RQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + 
Sbjct: 132 RQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSKKHRASHLLLENGRE 191

Query: 198 ELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPR 257
           E  D ++LPDI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S +
Sbjct: 192 EPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSK 251

Query: 258 MSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS 317
           +  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Sbjct: 252 LRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFS 311

Query: 318 NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSD 377
            YH+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S 
Sbjct: 312 VYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSA 371

Query: 378 LLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCFSEE 424
           L+LPP  R Y++         +P+       LD  +A+H  C  ++
Sbjct: 372 LILPPLHRAYQE---------LPLA----LNLDVCEAYHSSCSQDD 401

[Close]

BLAST of Clc10G17860 vs. ExPASy TrEMBL
Match: A0A1S3B7L6 (mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 GN=LOC103486676 PE=3 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 7.5e-224
Identity = 396/424 (93.40%), Postives = 407/424 (95.99%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQPSQGQTATVSPNT   HSP+SADDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRHIQQPSQGQTATVSPNT---HSPSSADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSL DILSC+EKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCVEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHP+GSVEPDA+A
Sbjct: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPIGSVEPDALA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSNYH+FRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNYHVFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGR LSVNKQSDLLLPP VRPYKQFC SK SSAVPITSLKDQKLD VQAFHI CF
Sbjct: 361 KACSKCGRRLSVNKQSDLLLPPVVRPYKQFCASKNSSAVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEL 425
           SEE+
Sbjct: 421 SEEI 421

[Close]

BLAST of Clc10G17860 vs. ExPASy TrEMBL
Match: A0A0A0LGT1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1)

HSP 1 Score: 784.6 bits (2025), Expect = 2.2e-223
Identity = 397/424 (93.63%), Postives = 405/424 (95.52%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MR  QQPSQGQTATVSP+T   HSP S DDAPPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRHIQQPSQGQTATVSPST---HSPPSPDDAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ++KPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSSKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDEN SNNEP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENASNNEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVTDVKQNEL DSRSL DILSCMEKEVPELKIFTYERLDWLKQASALPSQA
Sbjct: 181 ALKKPCFSHGVTDVKQNELIDSRSLSDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEHSYHSPRMSPG+LGATP DKAGVIEL+IPSVFRAVVSLHPVGSVEPDA+A
Sbjct: 241 NENSIGALKEHSYHSPRMSPGALGATPADKAGVIELIIPSVFRAVVSLHPVGSVEPDALA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGN  +AALYPLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNQPKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGR LSVNKQSDLLLPPAVRPYKQFC SK SS VPITSLKDQKLD VQAFHI CF
Sbjct: 361 KACSKCGRRLSVNKQSDLLLPPAVRPYKQFCASKNSSVVPITSLKDQKLDSVQAFHIDCF 420

Query: 421 SEEL 425
           SEE+
Sbjct: 421 SEEI 421

[Close]

BLAST of Clc10G17860 vs. ExPASy TrEMBL
Match: A0A6J1FP59 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=3662 GN=LOC111446014 PE=3 SV=1)

HSP 1 Score: 763.5 bits (1970), Expect = 5.2e-217
Identity = 384/422 (91.00%), Postives = 401/422 (95.02%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ ELNDS SL DIL+CMEKEVP+LKIFTYERLDWLKQASALPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASALPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIGALKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NENSIGALKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISS VP+TSLKDQKLD VQAFHIGCF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSVVPVTSLKDQKLDSVQAFHIGCF 420

Query: 421 SE 423
           +E
Sbjct: 421 TE 422

[Close]

BLAST of Clc10G17860 vs. ExPASy TrEMBL
Match: A0A6J1KZZ9 (mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=3661 GN=LOC111498620 PE=3 SV=1)

HSP 1 Score: 761.9 bits (1966), Expect = 1.5e-216
Identity = 383/422 (90.76%), Postives = 400/422 (94.79%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQ P+QG TATVSP T   HS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQLPAQGLTATVSPTTVLRHSSGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTAQPHQ+TKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAQPHQSTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL++ENGSN EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDEENGSNMEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           A KKPCFSHGVTDVKQ ELNDS SL DIL+CMEKEVP+LKIFTYERLDWLKQAS LPSQA
Sbjct: 181 AQKKPCFSHGVTDVKQEELNDSSSLSDILTCMEKEVPDLKIFTYERLDWLKQASVLPSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           NENSIG LKEH+YHSPRMSP SL AT TDKA VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NENSIGTLKEHNYHSPRMSPRSLDATSTDKAAVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FFSPDERGSHVHARGFSN+HLFRHVTEHAATVLQYF+G  A+AAL+PLLLWICSYQNLFS
Sbjct: 301 FFSPDERGSHVHARGFSNHHLFRHVTEHAATVLQYFIGIQAKAALHPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTSKISSAVP+TSLKDQKLD VQAFHIGCF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSKISSAVPVTSLKDQKLDSVQAFHIGCF 420

Query: 421 SE 423
           +E
Sbjct: 421 TE 422

[Close]

BLAST of Clc10G17860 vs. ExPASy TrEMBL
Match: A0A6J1DC62 (mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX=3673 GN=LOC111019372 PE=3 SV=1)

HSP 1 Score: 747.3 bits (1928), Expect = 3.8e-212
Identity = 373/424 (87.97%), Postives = 399/424 (94.10%), Query Frame = 0


Query: 1   MRQTQQPSQGQTATVSPNTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRL 60
           MRQTQQP+QGQTATVSPNTA PHS  SA++APPKQVALAMDRLGHAARLIADIRLGADRL
Sbjct: 1   MRQTQQPAQGQTATVSPNTAAPHSGGSAEEAPPKQVALAMDRLGHAARLIADIRLGADRL 60

Query: 61  LEALCVTAQPHQTTKPLHLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGL 120
           LEALCVTA PHQ+TKPLHLFQKED SMRQHL DLRAVGKQLEESGVLSESLLSRSNSWGL
Sbjct: 61  LEALCVTAHPHQSTKPLHLFQKEDDSMRQHLRDLRAVGKQLEESGVLSESLLSRSNSWGL 120

Query: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEP 180
           HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHL+DE+  N EP
Sbjct: 121 HMPLVCPDGAVVAYAWKRQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLDDESRLNLEP 180

Query: 181 ALKKPCFSHGVTDVKQNELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQA 240
           ALKKPCFSHGVT++KQ+ELN+ R+L DIL+CMEKEVP+LKIFTYERLDWLKQA AL SQA
Sbjct: 181 ALKKPCFSHGVTEIKQDELNEPRTLSDILTCMEKEVPDLKIFTYERLDWLKQAPALSSQA 240

Query: 241 NENSIGALKEHSYHSPRMSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVA 300
           N+NSIGALKEH+YHSPRM PGSL A+  DK  VIEL+IPSVFRAVVSLHPVGSVEPDAVA
Sbjct: 241 NDNSIGALKEHNYHSPRMGPGSLAASSKDKVSVIELIIPSVFRAVVSLHPVGSVEPDAVA 300

Query: 301 FFSPDERGSHVHARGFSNYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFS 360
           FF+PDERGS+VHARGFS +HLFRHVTEHAATVLQYFLG   +AALYPLLLWICSYQNLFS
Sbjct: 301 FFAPDERGSYVHARGFSVHHLFRHVTEHAATVLQYFLGIQEKAALYPLLLWICSYQNLFS 360

Query: 361 KACSKCGRLLSVNKQSDLLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCF 420
           KACSKCGRLLSVNKQSDLLLPPA+RPYKQFCTS++ SAVPI+SLKDQ+ DPVQAFHIGCF
Sbjct: 361 KACSKCGRLLSVNKQSDLLLPPAIRPYKQFCTSRVLSAVPISSLKDQRSDPVQAFHIGCF 420

Query: 421 SEEL 425
           SEEL
Sbjct: 421 SEEL 424

[Close]

BLAST of Clc10G17860 vs. TAIR 10
Match: AT3G09180.1 (CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627); Has 112 Blast hits to 112 proteins in 38 species: Archae - 0; Bacteria - 0; Metazoa - 79; Fungi - 0; Plants - 23; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 450.7 bits (1158), Expect = 1.4e-126
Identity = 241/406 (59.36%), Postives = 298/406 (73.40%), Query Frame = 0


Query: 18  NTAPPHSPASADDAPPKQVALAMDRLGHAARLIADIRLGADRLLEALCVTAQPHQTTKPL 77
           N A   +  S  DAPPKQVA AM+RL  AAR+IADIRLGADR+LEA+ V +QP  T  PL
Sbjct: 12  NPAEAANNQSESDAPPKQVAQAMERLNQAARVIADIRLGADRILEAMFVASQPRHTDMPL 71

Query: 78  HLFQKEDASMRQHLLDLRAVGKQLEESGVLSESLLSRSNSWGLHMPLVCPDGAVVAYAWK 137
            LF +EDASMRQHL DLR +GK+LEESGVL+ESL SRSNSWGLHMPLVCPDGAVVAYAWK
Sbjct: 72  QLFLREDASMRQHLQDLRLIGKKLEESGVLTESLRSRSNSWGLHMPLVCPDGAVVAYAWK 131

Query: 138 RQLAGQAGASAVDRTRLALKAFTDQKRRFFPHLEDENGSNNEPALKKPCFSHGVTDVKQN 197
           RQLAGQAGASAVDRTRLALKAFTDQKRRFFPH++D  G   EP+ KK   SH + +  + 
Sbjct: 132 RQLAGQAGASAVDRTRLALKAFTDQKRRFFPHIDD--GLKMEPSSKKHRASHLLLENGRE 191

Query: 198 ELNDSRSLPDILSCMEKEVPELKIFTYERLDWLKQASALPSQANENSIGALKEHSYHSPR 257
           E  D ++LPDI S +EK VP +K+ TY RL+WLK+A++LP   +++   A K     S +
Sbjct: 192 EPVDYKTLPDIQSRLEKLVPSVKVSTYGRLNWLKRANSLPGSGSDDPTEASKPIFQSSSK 251

Query: 258 MSPGSLGATPTDKAGVIELVIPSVFRAVVSLHPVGSVEPDAVAFFSPDERGSHVHARGFS 317
           +  G L     DK  VIEL  PS+FRA+VSL P GSV+PDAVAFFSPDE GS++HARGFS
Sbjct: 252 LRSG-LQTEVVDKIAVIELSFPSLFRAIVSLSPAGSVDPDAVAFFSPDEGGSYLHARGFS 311

Query: 318 NYHLFRHVTEHAATVLQYFLGNLAEAALYPLLLWICSYQNLFSKACSKCGRLLSVNKQSD 377
            YH+++H+TEHAAT LQYFLG     ALY LLLWICS++++FSK C+KCGRLL+++K+S 
Sbjct: 312 VYHVYKHITEHAATALQYFLGFGTGTALYSLLLWICSFESVFSKPCTKCGRLLAMDKKSA 371

Query: 378 LLLPPAVRPYKQFCTSKISSAVPITSLKDQKLDPVQAFHIGCFSEE 424
           L+LPP  R Y++         +P+       LD  +A+H  C  ++
Sbjct: 372 LILPPLHRAYQE---------LPLA----LNLDVCEAYHSSCSQDD 401

The following BLAST results are available for this feature:

BLAST of Clc10G17860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904949.1	1.3e-230	95.99	mediator of RNA polymerase II transcription subunit 27 [Benincasa hispida] >XP_0...	[more]
XP_008442914.1	1.5e-223	93.40	PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Cucumis melo]	[more]
XP_004136512.1	4.5e-223	93.63	mediator of RNA polymerase II transcription subunit 27 isoform X1 [Cucumis sativ...	[more]
XP_022940393.1	1.1e-216	91.00	mediator of RNA polymerase II transcription subunit 27 [Cucurbita moschata]	[more]
XP_023539656.1	3.1e-216	91.00	mediator of RNA polymerase II transcription subunit 27 [Cucurbita pepo subsp. pe...	[more]

BLAST of Clc10G17860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8RWM3	2.0e-125	59.36	Mediator of RNA polymerase II transcription subunit 27 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc10G17860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B7L6	7.5e-224	93.40	mediator of RNA polymerase II transcription subunit 27 OS=Cucumis melo OX=3656 G...	[more]
A0A0A0LGT1	2.2e-223	93.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G781560 PE=3 SV=1	[more]
A0A6J1FP59	5.2e-217	91.00	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita moschata OX=...	[more]
A0A6J1KZZ9	1.5e-216	90.76	mediator of RNA polymerase II transcription subunit 27 OS=Cucurbita maxima OX=36...	[more]
A0A6J1DC62	3.8e-212	87.97	mediator of RNA polymerase II transcription subunit 27 OS=Momordica charantia OX...	[more]

BLAST of Clc10G17860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G09180.1	1.4e-126	59.36	CONTAINS InterPro DOMAIN/s: Mediator complex subunit Med27 (InterPro:IPR021627);...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021627	Mediator complex, subunit Med27	PFAM	PF11571	Med27	coord: 302..419 e-value: 1.6E-22 score: 79.6
IPR021627	Mediator complex, subunit Med27	PANTHER	PTHR13130	34 KDA TRANSCRIPTIONAL CO-ACTIVATOR-RELATED	coord: 18..391
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR13130:SF5	BNAC03G36240D PROTEIN	coord: 18..391

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G17860.2	Clc10G17860.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003713	transcription coactivator activity