Clc10G17460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G17460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	VQ domain-containing protein
Location	ClcChr10: 31322388 .. 31322852 (-)
RNA-Seq Expression	Clc10G17460
Synteny	Clc10G17460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TAAATTTCAAGCTCTTTCGTTCCTAATAATTCAAGACGGCAAAATCAAAGAAAGAAGAAGAAGAAATCTAACCAAATTTCGAAGCCGTAGCGCGTAATTGCAGAACAATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAGCTTACGCCGTTGCACGGCGGATCCGTCGTGG

mRNA sequence

TAAATTTCAAGCTCTTTCGTTCCTAATAATTCAAGACGGCAAAATCAAAGAAAGAAGAAGAAGAAATCTAACCAAATTTCGAAGCCGTAGCGCGTAATTGCAGAACAATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAGCTTACGCCGTTGCACGGCGGATCCGTCGTGG

Coding sequence (CDS)

ATGATGAGAAATCAATTGCAATTGAGAGGTCCGAGGCCGCCGCCATTGACGGTGAACAAATCCTCCACTAAGATTTTCAAGAAATCGACGAAGAATAATCCGCTTCCGATTCCGAACCGACGCGACCGCCGTTCTCCGGTAATCATTTACCTCCGATCACCGAAGATCATCCATGTCCGTCCTGAGGAGTTCAAAAGCTTCGTTCAACGCCTCACCGGAAACCGATCCTCTGTCGCCGTCGTCACGTCGTCCTGTTCTACTACTGAATTAATTACGAATCATTCCGGTGAGGAATTTGTATCCGCTTGTAATTGCATTCCGTCGTAG

Protein sequence

MMRNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS

Homology

[Close]

BLAST of Clc10G17460 vs. NCBI nr
Match: KAA0043778.1 (protein MKS1-like [Cucumis melo var. makuwa] >TYK25355.1 protein MKS1-like [Cucumis melo var. makuwa])

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-40
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPE
Sbjct: 9   RNQSQLRGPRPPPLTVNKSSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPE 68

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 69  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 109

[Close]

BLAST of Clc10G17460 vs. NCBI nr
Match: XP_008443599.1 (PREDICTED: protein MKS1-like [Cucumis melo])

HSP 1 Score: 173.7 bits (439), Expect = 8.6e-40
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPE
Sbjct: 7   RNQSQLRGPRPPPLTVNKSSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPE 66

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 67  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of Clc10G17460 vs. NCBI nr
Match: KGN59247.1 (hypothetical protein Csa_002000 [Cucumis sativus])

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

[Close]

BLAST of Clc10G17460 vs. NCBI nr
Match: KAG6596645.1 (VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7028183.1 VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 151.0 bits (380), Expect = 5.9e-33
Identity = 84/108 (77.78%), Postives = 89/108 (82.41%), Query Frame = 0


Query: 3   RNQ--LQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVR 62
           RNQ  L+LRGPRPPPLTVNKSSTKIFKKST  N  PIPNRRD   PVI+YLRSPKIIHVR
Sbjct: 6   RNQLPLRLRGPRPPPLTVNKSSTKIFKKSTTTNLRPIPNRRD---PVIVYLRSPKIIHVR 65

Query: 63  PEEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           PEEFKSFVQRLTGN SSVAVV +S S T +I +H GE  VSACN IPS
Sbjct: 66  PEEFKSFVQRLTGNGSSVAVVAASFSATGMIADHPGEVCVSACNYIPS 110

[Close]

BLAST of Clc10G17460 vs. NCBI nr
Match: XP_041027964.1 (protein MKS1-like [Juglans microcarpa x Juglans regia])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 52/87 (59.77%), Postives = 61/87 (70.11%), Query Frame = 0


Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKS 66
          QL GPRP PLTV+KSS KI K      P PIP+R+  RSPVIIYL+SPK+IHVRPEEF  
Sbjct: 17 QLHGPRPAPLTVSKSSIKIRK------PFPIPSRKS-RSPVIIYLQSPKVIHVRPEEFMC 76

Query: 67 FVQRLTGNR--SSVAVVTSSCSTTELI 92
           VQRLTGN+  S  A  + S S+T  +
Sbjct: 77 TVQRLTGNQAPSDAAASSHSYSSTSCV 96

[Close]

BLAST of Clc10G17460 vs. ExPASy Swiss-Prot
Match: Q8LGD5 (Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2)

HSP 1 Score: 65.9 bits (159), Expect = 3.3e-10
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKII 62
          + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVV 78

Query: 63 HVRPEEFKSFVQRLTGNRSSV 79
          H    EF + VQRLTG  S V
Sbjct: 79 HATASEFMNVVQRLTGISSGV 97

[Close]

BLAST of Clc10G17460 vs. ExPASy Swiss-Prot
Match: F4HWF9 (Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE=2 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.3e-06
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIH 69
           GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +SS S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of Clc10G17460 vs. ExPASy Swiss-Prot
Match: Q9CA36 (VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VQ8 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 6.4e-06
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

[Close]

BLAST of Clc10G17460 vs. ExPASy Swiss-Prot
Match: Q9LS54 (VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.4e-05
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 11  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQR 70
           P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+
Sbjct: 41  PSPPTLKVNKDSHVIKKPP---SPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQK 100

Query: 71  LTG 74
           LTG
Sbjct: 101 LTG 100

[Close]

BLAST of Clc10G17460 vs. ExPASy TrEMBL
Match: A0A5D3DP92 (Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G004940 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPE
Sbjct: 9   RNQSQLRGPRPPPLTVNKSSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPE 68

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 69  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 109

[Close]

BLAST of Clc10G17460 vs. ExPASy TrEMBL
Match: A0A1S3B975 (protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 4.1e-40
Identity = 89/106 (83.96%), Postives = 95/106 (89.62%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
           RNQ QLRGPRPPPLTVNKSST IFKKSTKN     PN+R+RRSP+IIYLRSPKIIHVRPE
Sbjct: 7   RNQSQLRGPRPPPLTVNKSSTNIFKKSTKN-----PNQRNRRSPIIIYLRSPKIIHVRPE 66

Query: 63  EFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EFKSFVQRLTGNRSSVAVV SSCS + +IT+HSGEEF SACNCIPS
Sbjct: 67  EFKSFVQRLTGNRSSVAVVASSCSASGMITDHSGEEFASACNCIPS 107

[Close]

BLAST of Clc10G17460 vs. ExPASy TrEMBL
Match: A0A0A0LEW5 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 5.6e-37
Identity = 87/107 (81.31%), Postives = 92/107 (85.98%), Query Frame = 0


Query: 3   RNQLQLRGPRPPPLTVNK-SSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRP 62
           RN  QLRGPRPPPLTVNK SST I KKSTKNNPLPI N+R RRSP+IIYLRSPK+IHVRP
Sbjct: 9   RNHSQLRGPRPPPLTVNKSSSTNISKKSTKNNPLPISNQRHRRSPIIIYLRSPKVIHVRP 68

Query: 63  EEFKSFVQRLTGNRSSVAVVTSSCSTTELITNHSGEEFVSACNCIPS 109
           EEFKSFVQRLTGNRSSVAVV SSCS T +I +   EEFVS CNCIPS
Sbjct: 69  EEFKSFVQRLTGNRSSVAVVASSCSATGMIND---EEFVSVCNCIPS 112

[Close]

BLAST of Clc10G17460 vs. ExPASy TrEMBL
Match: A0A2N9GB07 (VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 4.6e-15
Identity = 51/84 (60.71%), Postives = 60/84 (71.43%), Query Frame = 0


Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPE 62
          +  LQL+GPRP PLTVNKSSTKI K+       P+PN R R SPVIIYL+SPK+IHVRPE
Sbjct: 7  KKYLQLQGPRPAPLTVNKSSTKIKKQ-------PLPN-RTRSSPVIIYLQSPKVIHVRPE 66

Query: 63 EFKSFVQRLTGNRSSVAVVTSSCS 87
          EF   VQ+LTGN++   V   S S
Sbjct: 67 EFMGIVQQLTGNQAPSRVAADSSS 82

[Close]

BLAST of Clc10G17460 vs. ExPASy TrEMBL
Match: A0A1R3JJT0 (VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 4.3e-13
Identity = 46/79 (58.23%), Postives = 56/79 (70.89%), Query Frame = 0


Query: 7  QLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIP--NRRDRRSPVIIYLRSPKIIHVRPEEF 66
          +L+GPRP PL V+ +S+KI KKS+  + L  P  NR     PV+IYLRSPKIIHVRPEEF
Sbjct: 9  ELQGPRPTPLKVSNTSSKIIKKSSTTSHLQAPKNNRSKIIDPVVIYLRSPKIIHVRPEEF 68

Query: 67 KSFVQRLTGNRSSVAVVTS 84
           S VQRLTG  S+ A  +S
Sbjct: 69 MSLVQRLTGKDSTTATTSS 87

[Close]

BLAST of Clc10G17460 vs. TAIR 10
Match: AT3G18690.1 (MAP kinase substrate 1 )

HSP 1 Score: 65.9 bits (159), Expect = 2.3e-11
Identity = 39/81 (48.15%), Postives = 48/81 (59.26%), Query Frame = 0


Query: 3  RNQLQLRGPRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRD-----RRSPVIIYLRSPKII 62
          + QLQ+ GPRP PL+V+K S KI  K    +P P PNR        R PV+IY  SPK++
Sbjct: 19 KRQLQICGPRPSPLSVHKDSHKI--KKPPKHPAPPPNRDQPPPYIPREPVVIYAVSPKVV 78

Query: 63 HVRPEEFKSFVQRLTGNRSSV 79
          H    EF + VQRLTG  S V
Sbjct: 79 HATASEFMNVVQRLTGISSGV 97

[Close]

BLAST of Clc10G17460 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-08
Identity = 38/90 (42.22%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIH 69
           GPRP PL V   S KI KK     P P P             R    PVIIY  SP+IIH
Sbjct: 13  GPRPIPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVIIYTVSPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +S  S+T
Sbjct: 73  THPNNFMTLVQRLTGKTSTSTTSSSYSSST 102

[Close]

BLAST of Clc10G17460 vs. TAIR 10
Match: AT1G21320.1 (nucleotide binding;nucleic acid binding )

HSP 1 Score: 53.9 bits (128), Expect = 9.2e-08
Identity = 36/90 (40.00%), Postives = 43/90 (47.78%), Query Frame = 0


Query: 10  GPRPPPLTVNKSSTKIFKKSTKNNPLPIP-----------NRRDRRSPVIIYLRSPKIIH 69
           GP+P PL V   S KI KK     P P P             R    PV IY  +P+IIH
Sbjct: 13  GPKPTPLKVRGDSHKIIKKPPLAPPHPQPQPPQTHQQEPSQSRPPPGPVNIYTVTPRIIH 72

Query: 70  VRPEEFKSFVQRLTGNRSSVAVVTSSCSTT 89
             P  F + VQRLTG  S+    +SS S+T
Sbjct: 73  THPNNFMTLVQRLTGQTSTSTTSSSSSSST 102

[Close]

BLAST of Clc10G17460 vs. TAIR 10
Match: AT1G68450.1 (VQ motif-containing protein )

HSP 1 Score: 51.6 bits (122), Expect = 4.6e-07
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 0


Query: 7  QLRGPRPPPLTVNKSSTKIFKKST-KNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFK 66
          ++ G RP  L +   S  I K S+ K+ P P      R SPVIIY  SPK+IH R E+F 
Sbjct: 8  EINGSRPSSLKLAGESHTIKKTSSCKSKPRP----HGRASPVIIYAHSPKVIHTRAEDFM 67

Query: 67 SFVQRLTGNRSSVAVVTSSCSTT 89
          + VQRLTG    +   TS  S++
Sbjct: 68 ALVQRLTGLDEIIRRNTSESSSS 86

[Close]

BLAST of Clc10G17460 vs. TAIR 10
Match: AT3G18360.1 (VQ motif-containing protein )

HSP 1 Score: 49.7 bits (117), Expect = 1.7e-06
Identity = 28/63 (44.44%), Postives = 36/63 (57.14%), Query Frame = 0


Query: 11  PRPPPLTVNKSSTKIFKKSTKNNPLPIPNRRDRRSPVIIYLRSPKIIHVRPEEFKSFVQR 70
           P PP L VNK S  I K     +P    +    R PVIIY  +P+IIH  P++F + VQ+
Sbjct: 41  PSPPTLKVNKDSHVIKKPP---SPSSFSSAAKPRHPVIIYTHTPRIIHTNPKDFMALVQK 100

Query: 71  LTG 74
           LTG
Sbjct: 101 LTG 100

The following BLAST results are available for this feature:

BLAST of Clc10G17460 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0043778.1	8.6e-40	83.96	protein MKS1-like [Cucumis melo var. makuwa] >TYK25355.1 protein MKS1-like [Cucu...	[more]
XP_008443599.1	8.6e-40	83.96	PREDICTED: protein MKS1-like [Cucumis melo]	[more]
KGN59247.1	1.2e-36	81.31	hypothetical protein Csa_002000 [Cucumis sativus]	[more]
KAG6596645.1	5.9e-33	77.78	VQ motif-containing protein 8, chloroplastic, partial [Cucurbita argyrosperma su...	[more]
XP_041027964.1	1.1e-13	59.77	protein MKS1-like [Juglans microcarpa x Juglans regia]	[more]

BLAST of Clc10G17460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8LGD5	3.3e-10	48.15	Protein MKS1 OS=Arabidopsis thaliana OX=3702 GN=MKS1 PE=1 SV=2	[more]
F4HWF9	1.3e-06	40.00	Nuclear speckle RNA-binding protein B OS=Arabidopsis thaliana OX=3702 GN=NSRB PE...	[more]
Q9CA36	6.4e-06	42.17	VQ motif-containing protein 8, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=...	[more]
Q9LS54	2.4e-05	44.44	VQ motif-containing protein 20 OS=Arabidopsis thaliana OX=3702 GN=VQ20 PE=2 SV=1	[more]

BLAST of Clc10G17460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DP92	4.1e-40	83.96	Protein MKS1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G00...	[more]
A0A1S3B975	4.1e-40	83.96	protein MKS1-like OS=Cucumis melo OX=3656 GN=LOC103487155 PE=4 SV=1	[more]
A0A0A0LEW5	5.6e-37	81.31	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G785410 PE=4 SV=...	[more]
A0A2N9GB07	4.6e-15	60.71	VQ domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS24585 PE=4 ...	[more]
A0A1R3JJT0	4.3e-13	58.23	VQ motif-containing protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_05625 P...	[more]

BLAST of Clc10G17460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G18690.1	2.3e-11	48.15	MAP kinase substrate 1	[more]
AT1G21326.1	2.4e-08	42.22	VQ motif-containing protein	[more]
AT1G21320.1	9.2e-08	40.00	nucleotide binding;nucleic acid binding	[more]
AT1G68450.1	4.6e-07	42.17	VQ motif-containing protein	[more]
AT3G18360.1	1.7e-06	44.44	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 53..75 e-value: 1.2E-7 score: 31.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR33143:SF51	PROTEIN MKS1-LIKE	coord: 3..88
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 3..88

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G17460.1	Clc10G17460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus