Clc10G16890 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G16890
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	VQ motif-containing protein 25-like
Location	ClcChr10: 30802842 .. 30803440 (+)
RNA-Seq Expression	Clc10G16890
Synteny	Clc10G16890

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TACCATTTCACTCTCTCTTAATTTCTCTCAAACAAAATCCCTTCTCTCTCTACCTATATTTTCAAATCCCAACTCTTACTCTGTTTTCTCTGTTATTAATGGACGCCATTCTGAACAAACAACCTCCTCATCTATTGCCCAACTCGGATCGCTCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCAGAGATCATTAAAACCGACGTCGCCAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAACCCACGACGGCGGAGGAGAAGATTCTTCCCGCTGAAATTCGGCAGGAGGCGGTGGCGGTGGCGTTCGATGATCGGAAGACGGAGATGGGCGGCGGCGGGGGGTGCCGGAGAGTTGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGAGGAAGGAGAAGATGAAGAAGAGGTGTTGAACGACGTCGTGGGGATGTGGAACGACGTCGTCGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTCCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGAAGAAATTCAATTTGCTTAA

mRNA sequence

TACCATTTCACTCTCTCTTAATTTCTCTCAAACAAAATCCCTTCTCTCTCTACCTATATTTTCAAATCCCAACTCTTACTCTGTTTTCTCTGTTATTAATGGACGCCATTCTGAACAAACAACCTCCTCATCTATTGCCCAACTCGGATCGCTCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCAGAGATCATTAAAACCGACGTCGCCAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAACCCACGACGGCGGAGGAGAAGATTCTTCCCGCTGAAATTCGGCAGGAGGCGGTGGCGGTGGCGTTCGATGATCGGAAGACGGAGATGGGCGGCGGCGGGGGGTGCCGGAGAGTTGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGAGGAAGGAGAAGATGAAGAAGAGGTGTTGAACGACGTCGTGGGGATGTGGAACGACGTCGTCGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTCCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGAAGAAATTCAATTTGCTTAA

Coding sequence (CDS)

ATGGACGCCATTCTGAACAAACAACCTCCTCATCTATTGCCCAACTCGGATCGCTCGCCGGCCATGGCGCTGCACACAGCTTCCCACGCCATTTCAAAGCCCAAACCCAAGATTCGTATCATTCACATCTTCGCACCAGAGATCATTAAAACCGACGTCGCCAATTTCAGAGAGCTCGTTCAGAGACTCACCGGAAAACCCACGACGGCGGAGGAGAAGATTCTTCCCGCTGAAATTCGGCAGGAGGCGGTGGCGGTGGCGTTCGATGATCGGAAGACGGAGATGGGCGGCGGCGGGGGGTGCCGGAGAGTTGTGAAGAAGGAAGATCGGGAAGAGGAAGAGGAGGAAGGAGAAGATGAAGAAGAGGTGTTGAACGACGTCGTGGGGATGTGGAACGACGTCGTCGGATTTGAAGGGTTTATTGAAGAATTGGGTGAATTTCCGTTCCTTCCTTCGGCTCATCAAATAATGCATGGTTTTGAAGAAATTCAATTTGCTTAA

Protein sequence

MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTTAEEKILPAEIRQEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEEEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA

Homology

[Close]

BLAST of Clc10G16890 vs. NCBI nr
Match: XP_038906267.1 (VQ motif-containing protein 25 [Benincasa hispida])

HSP 1 Score: 281.6 bits (719), Expect = 4.5e-72
Identity = 148/171 (86.55%), Postives = 151/171 (88.30%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           MDAIL KQ  HLLPNS    AMALHTASH+ISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MDAILKKQRRHLLPNSAHPAAMALHTASHSISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEAVAV-----AFDDRKTEMGGGGGCRRVVKKEDREEEEE 120
           QRLTGKP TAEEKILP EI+ E VAV     AFDDRKTEMGG GGCRRVVKKEDREE+EE
Sbjct: 61  QRLTGKPATAEEKILPEEIQPETVAVASIAAAFDDRKTEMGGSGGCRRVVKKEDREEDEE 120

Query: 121 EGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EGEDEEEVLNDVVGMWNDVVGFE FIEELGEFP LPSAHQIMHGFEE QFA
Sbjct: 121 EGEDEEEVLNDVVGMWNDVVGFESFIEELGEFPLLPSAHQIMHGFEETQFA 171

[Close]

BLAST of Clc10G16890 vs. NCBI nr
Match: XP_022983122.1 (VQ motif-containing protein 25-like [Cucurbita maxima])

HSP 1 Score: 231.5 bits (589), Expect = 5.3e-57
Identity = 130/173 (75.14%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEA---VAVAFDDRKTEMGGGGGCRRVV----KKEDREEE 120
           QRLTGKP TAEEKI+P +I   A   VA AFD RK+EM GGG CRRV     ++E+ EEE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPAAVADVATAFDHRKSEM-GGGECRRVKTEDREEEEEEEE 120

Query: 121 EEEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EEE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 170

[Close]

BLAST of Clc10G16890 vs. NCBI nr
Match: KAG6580809.1 (VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 131/172 (76.16%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRT--LLQNSGRPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEAV---AVAFDDRKTEMGGGGGCRRVVKKEDR---EEEE 120
           QRLTGKP TAEEKI+P +I   AV   A AFD RK+EM GGG CRR VK EDR   EEEE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPVAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEEEE 120

Query: 121 EEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Clc10G16890 vs. NCBI nr
Match: XP_023528893.1 (VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.2 bits (583), Expect = 2.6e-56
Identity = 129/176 (73.30%), Postives = 142/176 (80.68%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMA+HTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRT--LLQNSARPAAMAVHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEAVA---VAFDDRKTEMGGGGGCRRV-------VKKEDR 120
           QRLTGKP TAEEKI+P +I   AVA    AFD RK+EM GGG CRRV        ++E+ 
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPVAVADIVTAFDHRKSEM-GGGECRRVKTEDREEEEEEEE 120

Query: 121 EEEEEEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EEEEEE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 173

[Close]

BLAST of Clc10G16890 vs. NCBI nr
Match: XP_022935342.1 (VQ motif-containing protein 25-like [Cucurbita moschata])

HSP 1 Score: 228.8 bits (582), Expect = 3.4e-56
Identity = 131/172 (76.16%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEAV---AVAFDDRKTEMGGGGGCRRVVKKEDR---EEEE 120
           QRLTGKP TAEEKI+P +I   AV   A AFD RK+EM GGG CRR VK EDR   EEEE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPVAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEEEE 120

Query: 121 EEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Clc10G16890 vs. ExPASy Swiss-Prot
Match: Q9M2P8 (VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-15
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 21  AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTTAEEKILPAEIR 80
           ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ LTGKP   +++   A+ R
Sbjct: 15  SIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPD--DQRTSKAKPR 74

Query: 81  QEAVAVAFDDRKTEMGGGGGCRRVVKKEDREE-EEEEGEDEEEVLN--DVVGMWNDVVG- 140
           ++   +               R+V    + E+  E E  D+E  LN  ++   WN   G 
Sbjct: 75  RDMHRLH--------------RQVQDMINTEKLREPEHCDQEFCLNAEELSMTWNGNNGA 134

Query: 141 -------------FEGFIEELGEFPFLP 152
                        FEGFI+ELGEFP+LP
Sbjct: 135 GESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Clc10G16890 vs. ExPASy Swiss-Prot
Match: O48522 (VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 3.4e-14
Identity = 63/149 (42.28%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGK--------PTTAE 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK        P    
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  EKILPAEIRQEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEEEG---------EDEEE 139
            K  P   R        D  K+     G C          +EEEEG          DE  
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFC-------INSDEEEEGMVSMTWNGNGDESS 134

Query: 140 VLNDVVGMWNDVVGFEGFIEELGEFPFLP 152
                 G  N +   +GFI+ELGEFP+LP
Sbjct: 135 -----GGFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Clc10G16890 vs. ExPASy Swiss-Prot
Match: O64868 (VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 2.7e-11
Identity = 57/153 (37.25%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 19  SPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTTAEEKILPAE 78
           S  ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKP   E K     
Sbjct: 14  SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKR 73

Query: 79  IR------QEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEEEGEDEEEVLNDVVGMWN 138
            +      QE V    DD +      G    +    + + +EE G  ++   N      N
Sbjct: 74  AKSRITTPQEPVC---DDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----N 133

Query: 139 DVVGFEGFIEELGE-----FPFLPSAHQIMHGF 161
                EG I+++GE     FP   S+   + GF
Sbjct: 134 TYFDLEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Clc10G16890 vs. ExPASy TrEMBL
Match: A0A6J1IYE1 (VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 PE=4 SV=1)

HSP 1 Score: 231.5 bits (589), Expect = 2.6e-57
Identity = 130/173 (75.14%), Postives = 142/173 (82.08%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPGAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEA---VAVAFDDRKTEMGGGGGCRRVV----KKEDREEE 120
           QRLTGKP TAEEKI+P +I   A   VA AFD RK+EM GGG CRRV     ++E+ EEE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPAAVADVATAFDHRKSEM-GGGECRRVKTEDREEEEEEEE 120

Query: 121 EEEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EEE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 170

[Close]

BLAST of Clc10G16890 vs. ExPASy TrEMBL
Match: A0A6J1F598 (VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC111442255 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.7e-56
Identity = 131/172 (76.16%), Postives = 141/172 (81.98%), Query Frame = 0


Query: 1   MDAILNKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60
           M+AI+ K+   LL NS R  AMA+H ASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV
Sbjct: 1   MEAIMKKRA--LLQNSARPAAMAVHAASHAISKPKPKIRIIHIFAPEIIKTDVANFRELV 60

Query: 61  QRLTGKPTTAEEKILPAEIRQEAV---AVAFDDRKTEMGGGGGCRRVVKKEDR---EEEE 120
           QRLTGKP TAEEKI+P +I   AV   A AFD RK+EM GGG CRR VK EDR   EEEE
Sbjct: 61  QRLTGKPATAEEKIVPPQIPPVAVADIATAFDHRKSEM-GGGECRR-VKTEDREEEEEEE 120

Query: 121 EEGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEIQFA 167
           EE E+EEE L+DVVG+WNDVVGFEGFIEELGE P LPSAHQIMHGFEE QFA
Sbjct: 121 EEEEEEEEALSDVVGLWNDVVGFEGFIEELGEIPLLPSAHQIMHGFEETQFA 168

[Close]

BLAST of Clc10G16890 vs. ExPASy TrEMBL
Match: A0A5A7TRB0 (VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005450 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.5e-54
Identity = 124/182 (68.13%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 1   MDAIL--NKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           MDAIL   +Q PHLLP S R   M LH+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---TTAEEKILPAEIRQEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEE 120
           LVQRLTGKP   TT E+KILP +I     A AFD+RKTEM     CRR+VKKED ++EE+
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQI---PAAAAFDNRKTEM---VSCRRMVKKEDEDQEED 120

Query: 121 ------------EGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEI 166
                       EGE+EEE+L++VVGMWNDVVGFEGFI+ELGEFP +PSAHQIMHGFE+ 
Sbjct: 121 YDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMHGFEDT 176

[Close]

BLAST of Clc10G16890 vs. ExPASy TrEMBL
Match: A0A1S3B6P9 (VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.5e-54
Identity = 124/182 (68.13%), Postives = 140/182 (76.92%), Query Frame = 0


Query: 1   MDAIL--NKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60
           MDAIL   +Q PHLLP S R   M LH+ASHAISKPKPKIRIIHIFAPEIIKTDVANFRE
Sbjct: 1   MDAILKNQRQRPHLLPTSPRPSTMPLHSASHAISKPKPKIRIIHIFAPEIIKTDVANFRE 60

Query: 61  LVQRLTGKP---TTAEEKILPAEIRQEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEE 120
           LVQRLTGKP   TT E+KILP +I     A AFD+RKTEM     CRR+VKKED ++EE+
Sbjct: 61  LVQRLTGKPEAITTQEDKILPPQI---PAAAAFDNRKTEM---VSCRRMVKKEDEDQEED 120

Query: 121 ------------EGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFPFLPSAHQIMHGFEEI 166
                       EGE+EEE+L++VVGMWNDVVGFEGFI+ELGEFP +PSAHQIMHGFE+ 
Sbjct: 121 YDEEEEEEEGEGEGEEEEEMLDEVVGMWNDVVGFEGFIQELGEFPLIPSAHQIMHGFEDT 176

[Close]

BLAST of Clc10G16890 vs. ExPASy TrEMBL
Match: A0A0A0LBB1 (VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.0e-45
Identity = 111/153 (72.55%), Postives = 123/153 (80.39%), Query Frame = 0


Query: 1   MDAIL---NKQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFR 60
           M+AIL    +Q PHLLP S R  +MALH+ASH ISKPKPKIRIIHIFAPEIIKTDVANFR
Sbjct: 1   MEAILIKKQRQRPHLLPTSARPSSMALHSASHPISKPKPKIRIIHIFAPEIIKTDVANFR 60

Query: 61  ELVQRLTGKPTTAEE-KILPAEIRQEAVAVAFDDRKTEMGGGGGC-RRVVKKEDREEEEE 120
           ELVQRLTGKP   E+ KILP EI     A AFD+RKTE+  G GC RR+VKKED  E +E
Sbjct: 61  ELVQRLTGKPEATEDGKILPPEI---PPAAAFDNRKTEIVSGVGCRRRMVKKED--EYQE 120

Query: 121 EGEDEEEVLNDVVGMWNDVVGFEGFIEELGEFP 149
           E E+EEE+L DVVGMWNDVVGFEGFI+ELGEFP
Sbjct: 121 EDEEEEEMLEDVVGMWNDVVGFEGFIQELGEFP 148

[Close]

BLAST of Clc10G16890 vs. TAIR 10
Match: AT3G58000.1 (VQ motif-containing protein )

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-16
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 0


Query: 21  AMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTTAEEKILPAEIR 80
           ++A+H  S++I+K KPKIRIIHIFAPEIIKTDVANFRELVQ LTGKP   +++   A+ R
Sbjct: 15  SIAVHKQSYSITKSKPKIRIIHIFAPEIIKTDVANFRELVQSLTGKPD--DQRTSKAKPR 74

Query: 81  QEAVAVAFDDRKTEMGGGGGCRRVVKKEDREE-EEEEGEDEEEVLN--DVVGMWNDVVG- 140
           ++   +               R+V    + E+  E E  D+E  LN  ++   WN   G 
Sbjct: 75  RDMHRLH--------------RQVQDMINTEKLREPEHCDQEFCLNAEELSMTWNGNNGA 134

Query: 141 -------------FEGFIEELGEFPFLP 152
                        FEGFI+ELGEFP+LP
Sbjct: 135 GESSGGFLNGLGDFEGFIQELGEFPYLP 146

[Close]

BLAST of Clc10G16890 vs. TAIR 10
Match: AT2G42140.1 (VQ motif-containing protein )

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-15
Identity = 63/149 (42.28%), Postives = 74/149 (49.66%), Query Frame = 0


Query: 20  PAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGK--------PTTAE 79
           P +A+H  S  ++K KPKIRIIHIFAPEIIKTDVANFRE+VQ LTGK        P    
Sbjct: 15  PTIAMHKQSRTLTKSKPKIRIIHIFAPEIIKTDVANFREIVQNLTGKQDHHHHDLPHQKG 74

Query: 80  EKILPAEIRQEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEEEG---------EDEEE 139
            K  P   R        D  K+     G C          +EEEEG          DE  
Sbjct: 75  LKRNPRSRRSHDHHEVHDMNKSH----GFC-------INSDEEEEGMVSMTWNGNGDESS 134

Query: 140 VLNDVVGMWNDVVGFEGFIEELGEFPFLP 152
                 G  N +   +GFI+ELGEFP+LP
Sbjct: 135 -----GGFLNGLGDLDGFIQELGEFPYLP 147

[Close]

BLAST of Clc10G16890 vs. TAIR 10
Match: AT2G44340.1 (VQ motif-containing protein )

HSP 1 Score: 70.1 bits (170), Expect = 1.9e-12
Identity = 57/153 (37.25%), Postives = 75/153 (49.02%), Query Frame = 0


Query: 19  SPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKPTTAEEKILPAE 78
           S  ++++  S  ISK KPKIRIIHIFAPE+IKTDV NFR LVQ LTGKP   E K     
Sbjct: 14  SSRVSMNRNSQVISKIKPKIRIIHIFAPEVIKTDVKNFRSLVQSLTGKPAPGEAKTGKKR 73

Query: 79  IR------QEAVAVAFDDRKTEMGGGGGCRRVVKKEDREEEEEEGEDEEEVLNDVVGMWN 138
            +      QE V    DD +      G    +    + + +EE G  ++   N      N
Sbjct: 74  AKSRITTPQEPVC---DDHQPVNRLSGFTGLLANGGNHQVKEEWGSGDQSTSNT-----N 133

Query: 139 DVVGFEGFIEELGE-----FPFLPSAHQIMHGF 161
                EG I+++GE     FP   S+   + GF
Sbjct: 134 TYFDLEGLIQDVGEDYFSSFPMRSSSSSQVEGF 158

[Close]

BLAST of Clc10G16890 vs. TAIR 10
Match: AT3G60090.1 (VQ motif-containing protein )

HSP 1 Score: 63.9 bits (154), Expect = 1.4e-10
Identity = 36/59 (61.02%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 10 PHLLPNSDRSPAMA-LHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGKP 68
          PH     D S  +  ++  S  I+K KPKIRIIHIFAPEII TDV NFR LVQ LTGKP
Sbjct: 16 PHQTFYGDYSKTLVPMNKNSQIITKIKPKIRIIHIFAPEIINTDVKNFRTLVQSLTGKP 74

[Close]

BLAST of Clc10G16890 vs. TAIR 10
Match: AT1G21326.1 (VQ motif-containing protein )

HSP 1 Score: 42.0 bits (97), Expect = 5.6e-04
Identity = 26/64 (40.62%), Postives = 34/64 (53.12%), Query Frame = 0


Query: 7  KQPPHLLPNSDRSPAMALHTASHAISKPKPKIRIIHIFAPEIIKTDVANFRELVQRLTGK 66
          K+PP   P+    P    H    + S+P P   II+  +P II T   NF  LVQRLTGK
Sbjct: 30 KKPPLAPPHPQPQPPQT-HQQEPSQSRPPPGPVIIYTVSPRIIHTHPNNFMTLVQRLTGK 89

Query: 67 PTTA 71
           +T+
Sbjct: 90 TSTS 92

The following BLAST results are available for this feature:

BLAST of Clc10G16890 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906267.1	4.5e-72	86.55	VQ motif-containing protein 25 [Benincasa hispida]	[more]
XP_022983122.1	5.3e-57	75.14	VQ motif-containing protein 25-like [Cucurbita maxima]	[more]
KAG6580809.1	2.6e-56	76.16	VQ motif-containing protein 25, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_023528893.1	2.6e-56	73.30	VQ motif-containing protein 25-like [Cucurbita pepo subsp. pepo]	[more]
XP_022935342.1	3.4e-56	76.16	VQ motif-containing protein 25-like [Cucurbita moschata]	[more]

BLAST of Clc10G16890 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M2P8	1.8e-15	43.24	VQ motif-containing protein 25 OS=Arabidopsis thaliana OX=3702 GN=VQ25 PE=3 SV=1	[more]
O48522	3.4e-14	42.28	VQ motif-containing protein 17 OS=Arabidopsis thaliana OX=3702 GN=VQ17 PE=2 SV=1	[more]
O64868	2.7e-11	37.25	VQ motif-containing protein 18 OS=Arabidopsis thaliana OX=3702 GN=VQ18 PE=3 SV=1	[more]

BLAST of Clc10G16890 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IYE1	2.6e-57	75.14	VQ motif-containing protein 25-like OS=Cucurbita maxima OX=3661 GN=LOC111481765 ...	[more]
A0A6J1F598	1.7e-56	76.16	VQ motif-containing protein 25-like OS=Cucurbita moschata OX=3662 GN=LOC11144225...	[more]
A0A5A7TRB0	3.5e-54	68.13	VQ motif-containing protein 25-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A1S3B6P9	3.5e-54	68.13	VQ motif-containing protein 25-like OS=Cucumis melo OX=3656 GN=LOC103486769 PE=4...	[more]
A0A0A0LBB1	3.0e-45	72.55	VQ domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G807350 PE=4 SV=...	[more]

BLAST of Clc10G16890 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G58000.1	1.3e-16	43.24	VQ motif-containing protein	[more]
AT2G42140.1	2.4e-15	42.28	VQ motif-containing protein	[more]
AT2G44340.1	1.9e-12	37.25	VQ motif-containing protein	[more]
AT3G60090.1	1.4e-10	61.02	VQ motif-containing protein	[more]
AT1G21326.1	5.6e-04	40.63	VQ motif-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008889	VQ	PFAM	PF05678	VQ	coord: 43..69 e-value: 1.9E-12 score: 46.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..122
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 90..110
IPR039607	VQ motif-containing protein 8/17/18/20/21/25	PANTHER	PTHR33143	F16F4.1 PROTEIN-RELATED	coord: 6..151
IPR039834	VQ motif-containing protein 17/25	PANTHER	PTHR33143:SF3	VQ MOTIF-CONTAINING PROTEIN 17-RELATED	coord: 6..151

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G16890.1	Clc10G16890.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005634	nucleus