Clc10G16280 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G16280
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	ribosome production factor 1-like
Location	ClcChr10: 30035523 .. 30039925 (+)
RNA-Seq Expression	Clc10G16280
Synteny	Clc10G16280

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTTTTTTCCATTTTCCTAATATATATTTTTCATTTCGTTACCTTATGCTCTTCCGCTCTTGCCTCCGTCCGCCACTAGTCGAACGCCGCCACTCCTCAGTCTTCTCCTTCGCCAGTCGCCACCGCCCACATCTTCTTTTTCTTCCGAAATCGGTCTTTCAGGTTCGCTTCTATTTTTCAGTTTCATCCATCGCTTTCCTTCTGTGTTCCTTCTGTGTTCCTTCTGCAATTATAAAATCAACTAAGTAGAATACAACAATGGGGATTCTCGTTGTTTCCTTTGAGGATTAGGGATTTTTGGTCTTATAGCTGCAAAAGAATCTAATTATTGTGTTGTTCTAGGTTTGATAGGTTTTTGTAATCCCGAAACCTGTTTTCATATATTAATAATTTGCCCAACCCGACTCCAAATTTTTATTCAATCCATCCTTGCTTACTTCTTGCTGCATTCTGTTCATCTTTGTTTCTTTTTTGCTGCAATTGTGATTTGACATGGGGTAGAGAAAATTGTGTCCTTTTTCTCATAATGGATTTCTCCCGTAGTTGCTTGCTTTCGTATTTGTTCTCTTTCACCAATTTCTGATTTATGTTAGAGGTTGATCAAGGAGTATAGATGGGGGAGGAGAAAAAGAACAAGGGTATAATCCCATCAATGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGTAGGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAAGTATCTCCTGCATCTCCAGCATCTACTCTGTTTATCTTCTATCTTTAGAGATTCTGATCGTCTTTTTCGTCCTTTTCCCCCTGTAGCTTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCAGGGAAGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGGTTCTTCATGTTCTTCAATCTTAGAATATGACATTTAGCTTTTGTTTATTTGTAATTCTTGTCATTTAGAGTTCACTCTTTTAATATGTCTAGTTTTTGATTCTTTGCAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAGCGCGACATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACTGTAGGATTCCTCATTATTATTAGTTATGTAGCAATTTTGTTTTTAGCAACATGCACTAAATGGAGACCGACCTAAAACATTCACATTTGATTAGAGTTGGTATGGTACCTTATATTTAGATCTTCTGCTTGTATGTGACATGCTATTTGCAGATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGGTTATACTCATATTTACATTTTCTAATGAACACGAAGAAGGAAGAGGAAATTATAAAATAAATGAGGTTATACTCATATTTATAGAATATCAATTCTTCTCTTTCTTGTAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGGTAAGTTGATAGTCCTTCATAAACCTTGCAGTTCCTTCTTTTTGTCTCTTGCAAACTTGTTCTCTCTTTTTCTAGTATTTTGTTTCCTTGGCTGTATAGATTATATTCATTTCTCAATATAATGCAATGTTTTGAGATTCTTTCAGATGGTCTTTTAATTATTGGCTTACCTGACGGACCTACTGCGCATTTTAAGATATCTAATGTTGTCTTACGTAAGGATATTAAGGTATGCTGTTTCAAGTCAATGAAATAGCCCATGAATTTTTGTGTTGCATAATAACTACTACTGGGTTTTTCGGAGGATAAAATTTTCCATGAGACTTTAGCCATTTTATCTTTTCTTGCTTTGTAGAATCATGGAAATCCAACCAGCCATCAGCCAGAGCTGGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGGTTACATTCTGTACCTAAATTTCTTTATATGCAAACACCACCTCTTGTGAAGTCTGCGTTTCATTTTTAGGTGTTCTTGTTACTTTTTCATGTGCTTCTGTAATTATGACATCGCAAGTTTTTCTCAATCCATTGACTTTTGTGGTCTTGTTTATTTAGATTAATACAATCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGACGGGTTGCAACTTTTCACAACCAACGAGATTTTATATTCTTTCGGCATCATCGGTGAGATACTATATACATATATTTTTCTTTTAGTATGCACATGAGTTGGACTATGATTAATTTGTGTTTTTATCTTCTCAGATACATTTTTGAAAGCAAGGAAAATAAGAAAGAGTCAGACTCAAAAAATAAGTCCAAGGATACCAAGGGTGAGAAAGTTCTTCAGCAGAAAGTAGTTGCTCGGCTTCAGGTAGATATTAATATCTTCCCTTTCACTCCTCATAGAATGTTGCTGTTTTATGATTTCTTTTTCAACTAGGAGACTTCAATATTGTTTGCTTGTTTTTATCTTTTCTCTTTCTATAATTCAGTTTCTTTTTTCCTTTTCTAATTTTTTTTGAGGGTGATGATTAACATTAATTCTTTTTTGGGACTGGAGAAACCAGCATGGGTTGGCTTAGTGGAAATGGAAATATCTTAAAAAGGCCAGAGGGCCAAGGGGTCATGGATTCAATCCATGGTGGCCACCTACCTAGGATTTAATATCCTACGGGTTTCCTTGACACCTAAATGTTGTAGGGTTAGGCGAATTGTCCCATGAGATTAGTCGAGGTGCACGTAAGCTGGTCTGGACACTCACGGATATAAAAAAAAAAAAGTTTTTGGGACTGGAGAAATTTAGAAATGTTGAGCGGGTTTTCTGAGAAGTATAGTATGAAAGCCAAAATTTTCTTATTGTAACATACTCCTTTTGTTTTCAGTCATTAAGCCTCGCACATCAACAACATTATTTTCTATTGGCTTTTGTTTTTTAAATCAATTTGGAAACTAACTGATGAGTGTGTGGGAGTAAAATTGACTTGTGTGAGGACCTAAGTTTATGATTACATTAACCTTGTGCAATATCACTTATTGACATTTTTAGATAGTAATGTTTCTTCCCTTGTACTTAATCTCTCTTCTCTGTCAACAAAATAAACAAGTTGCAAGCACACCATCACTTAGTGTGTCCAAAACTTCCTCGTTATTCTTTGTGTCAATTTTGTTTTTGTTTTTGTTTTTTGTGTTCAGATTTGAATGAGAGTGATATCAGGAGAGTAAAATATGAGAAATAATTAGAGAAAAAACAAACTAAATAATGAGAGGGAGGAATAATAGCAACTGATTCTGAGATTTGATTTTTAGGAATGTGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGAGAATATGAATGGGTTCATAAGGTAAGTCTAAGTCTCTTGATCAGAAATGCATGAAACTCAAATGATATTAGATCATCCATCTTGTTTATCTAATGTGTTTTTCCCGTCTTTTCTTTGAATTCCAGCCTGAAATGGATACCAGCCGCAGAAGATTTTTCTTGTAACATTCTCATGGAGTTCATTACTTTTGGTTCTGGGGAGTAAAAATTCTTTGGCTCTGATTTATATAAAAATTTTGGTACGTAGAATTCATTTACTTGTTTATTTATTTTTTCTTTTAGGAAACATAACAATCTCATTAATAAGATGGAAATGTGATCTCCACTACAACTCAAAGGGATTAAAAAAGGATTCCCTGTTAACAAAGATTTGTGACAAACATTTTCATTATGGTCAAATGGCCATCTATCCTCGAGGTTTTTTTTTCTTTTATTTTTATTTTTTATTATTTATTTATTTTTTTAATAAAAAAAAAATTACTAAACATAGGTTAGATGGTTCTTTTGTGAGGTTAGTTAGGTTAAAAGTGTATGTATGCGAAATTAACCCAAATACTCAAGGAAGGTAAAAAGAAATATAAAGAAAAACGATAACATTTTGTTAGCATTACTGTTGCCTCGTGATTGTGCAGGGTGGACTGCTTATCAAATTCGAATCTCCATTTCGGCCTGCATGTATGTTAGAAGAAGTTGATTTATTTTTCACTATTCAAAATTTTGTAGCATTCCAGTTGAGATTGAGTTTGTTTTAGAGGCATCAATGTATTGATATTTGAAAGCATTTGGATAGTATAGTGTTATTTCTAGTAGCTGACAATTCAAAAGAAAAAGCCACATATTCATTCTCTGATCTAGTGGGTAAAAGGGTTGAGATTCAGGAGCTTATAGAATGCAATTTGGATTTTGAATTTTGCATGTCCGATATAAAGTGAAAGATTAGACTTGTT

mRNA sequence

CTTTTTTCCATTTTCCTAATATATATTTTTCATTTCGTTACCTTATGCTCTTCCGCTCTTGCCTCCGTCCGCCACTAGTCGAACGCCGCCACTCCTCAGTCTTCTCCTTCGCCAGTCGCCACCGCCCACATCTTCTTTTTCTTCCGAAATCGGTCTTTCAGAGGTTGATCAAGGAGTATAGATGGGGGAGGAGAAAAAGAACAAGGGTATAATCCCATCAATGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGTAGGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACTTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCAGGGAAGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAGCGCGACATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGATGGTCTTTTAATTATTGGCTTACCTGACGGACCTACTGCGCATTTTAAGATATCTAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCAGCCATCAGCCAGAGCTGGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAATCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGACGGGTTGCAACTTTTCACAACCAACGAGATTTTATATTCTTTCGGCATCATCGATACATTTTTGAAAGCAAGGAAAATAAGAAAGAGTCAGACTCAAAAAATAAGTCCAAGGATACCAAGGGTGAGAAAGTTCTTCAGCAGAAAGTAGTTGCTCGGCTTCAGGAATGTGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGAGAATATGAATGGGTTCATAAGCCTGAAATGGATACCAGCCGCAGAAGATTTTTCTTGTAACATTCTCATGGAGTTCATTACTTTTGGTTCTGGGGAGTAAAAATTCTTTGGCTCTGATTTATATAAAAATTTTGGGTGGACTGCTTATCAAATTCGAATCTCCATTTCGGCCTGCATGTATGTTAGAAGAAGTTGATTTATTTTTCACTATTCAAAATTTTGTAGCATTCCAGTTGAGATTGAGTTTGTTTTAGAGGCATCAATGTATTGATATTTGAAAGCATTTGGATAGTATAGTGTTATTTCTAGTAGCTGACAATTCAAAAGAAAAAGCCACATATTCATTCTCTGATCTAGTGGGTAAAAGGGTTGAGATTCAGGAGCTTATAGAATGCAATTTGGATTTTGAATTTTGCATGTCCGATATAAAGTGAAAGATTAGACTTGTT

Coding sequence (CDS)

ATGGGGGAGGAGAAAAAGAACAAGGGTATAATCCCATCAATGATAAAGAACAAAGAAAAGAGGGCAGAAGTGCACGCCAACCTCAAGAACCAGAAGAAGCTTGAGAAACGTAGGAGGGCCAAGGCTCGTGATGCTGCTGAGAAGCAAGCTCTTGAACTTGGAGAAGAACTTCCTCCTAGGAAGATTCCTCGCACCATTGAGAACACCAGGGAAGTTGATGAGACTGTTTGCAAACCTGATGATGAAGAGCTATTTGCTGGAAATGATGCCGATGAATTTAGTTCCATCATAAAGCGCGACATTTTGCCGAAAGTTCTAATTACTACTTGTCGTTTTAATTCTACTATTGGACCTGCTTTTATATCAGAGTTGCTTTCGGTGATACCAAATGCACATTACTACAAGAGAGGAACTAACGATTTGAAGAAGATTATAGAATATGCAAATGCCAAGGACTTCACTTCTTTGATGGTTGTCCATACGAGTAGGAGAAAATTGGATGGTCTTTTAATTATTGGCTTACCTGACGGACCTACTGCGCATTTTAAGATATCTAATGTTGTCTTACGTAAGGATATTAAGAATCATGGAAATCCAACCAGCCATCAGCCAGAGCTGGTATTGACCAACTTCACAACACGCCTTGGTCTTCGTGTTGGAAGATTAATACAATCACTATTCCCTCAAGATCCTAATTTTCGTGGTCGACGGGTTGCAACTTTTCACAACCAACGAGATTTTATATTCTTTCGGCATCATCGATACATTTTTGAAAGCAAGGAAAATAAGAAAGAGTCAGACTCAAAAAATAAGTCCAAGGATACCAAGGGTGAGAAAGTTCTTCAGCAGAAAGTAGTTGCTCGGCTTCAGGAATGTGGTCCTCGTTTCACAATGAAATTGATCAGTTTGCAGCATGGAACTTTCGATTCAAAAGGCGGAGAATATGAATGGGTTCATAAGCCTGAAATGGATACCAGCCGCAGAAGATTTTTCTTGTAA

Protein sequence

MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL

Homology

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BLAST of Clc10G16280 vs. NCBI nr
Match: XP_008443155.1 (PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_016899701.1 PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >KAA0053947.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa] >TYK25457.1 ribosome production factor 1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 641.0 bits (1652), Expect = 5.8e-180
Identity = 323/332 (97.29%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRKDIKNHGNPT HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. NCBI nr
Match: XP_038906205.1 (ribosome production factor 1 [Benincasa hispida])

HSP 1 Score: 635.6 bits (1638), Expect = 2.4e-178
Identity = 318/332 (95.78%), Postives = 327/332 (98.49%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEE KN+GIIPSMIKNKEKRAEVHANLKNQKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEENKNRGIIPSMIKNKEKRAEVHANLKNQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDET+CKPDDEELFAGNDADEFSSIIKR+ILPKVLITTCRFNSTIGP F
Sbjct: 61  KIPRTIENTREVDETLCKPDDEELFAGNDADEFSSIIKREILPKVLITTCRFNSTIGPTF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLR+GRLIQ+LFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRIGRLIQALFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. NCBI nr
Match: XP_031737500.1 (ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein Csa_002461 [Cucumis sativus])

HSP 1 Score: 629.8 bits (1623), Expect = 1.3e-176
Identity = 316/332 (95.18%), Postives = 325/332 (97.89%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEEKKNK I+PS IKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRK+IKNHGNPT HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSK TKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. NCBI nr
Match: XP_022156150.1 (ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 613.6 bits (1581), Expect = 1.0e-171
Identity = 311/333 (93.39%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 1   MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPT 180
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVA 240
           AHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV 
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK 300
           TFHNQRDFIFFRHHRYIF+SKENKKE+DSK+ SKD KGEKV +QKV+ARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of Clc10G16280 vs. NCBI nr
Match: XP_022155906.1 (ribosome production factor 1-like [Momordica charantia])

HSP 1 Score: 613.2 bits (1580), Expect = 1.3e-171
Identity = 310/333 (93.09%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 1   MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPT 180
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVA 240
           AHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV 
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK 300
           TFHNQRDF+FFRHHRYIF+SKENKKE+DSK+ SKD KGEKV QQKV+ARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot
Match: Q5R631 (Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.9e-73
Identity = 155/326 (47.55%), Postives = 203/326 (62.27%), Query Frame = 0


Query: 9   GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIEN 68
           G   S IKNKE+R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N
Sbjct: 51  GFSISEIKNKERR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDN 110

Query: 69  TREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVI 128
            R  DET   P+DEE+      DEF+S   +   PK+LITT             +L +VI
Sbjct: 111 QRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVI 170

Query: 129 PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVV 188
           PN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V 
Sbjct: 171 PNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVR 230

Query: 189 LRKDIKNHG-NPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDF 248
           LRK+IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+
Sbjct: 231 LRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDY 290

Query: 249 IFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT 308
           IFFR HRYIF S++                           +QE GPRFT+KL SLQ GT
Sbjct: 291 IFFRFHRYIFRSEKK------------------------VGIQELGPRFTLKLRSLQKGT 349

Query: 309 FDSKGGEYEWVHKP-EMDTSRRRFFL 333
           FDSK GEYEWVHKP EMDTSRR+F L
Sbjct: 351 FDSKYGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot
Match: Q8AVP1 (Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 276.2 bits (705), Expect = 4.9e-73
Identity = 155/322 (48.14%), Postives = 203/322 (63.04%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNK++R  +   LK +K+ EK    K R   +K+   LG++ PP+ +P+TIEN R  
Sbjct: 49  SEIKNKQRRQFMFIKLKQEKRKEKLILRKKR---KKEREALGDKAPPKPVPKTIENQRVY 108

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P DEE+      DEF+    +   PK+LITT          F  +L S+IPN+ 
Sbjct: 109 DETTVDPADEEVALDEATDEFAPYFNKQTTPKILITTSDRPRGRSVRFTEQLSSIIPNSD 168

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKD 192
            Y R    LKKII    ++D+T L+V++  R+  +GL++  LPDGPTAHFKISNV LRK+
Sbjct: 169 VYYRRGLALKKIIPQCVSRDYTDLLVINEDRKVPNGLVLCHLPDGPTAHFKISNVRLRKE 228

Query: 193 IKNHG-NPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFR 252
           +K  G  PT H+PE++L NFTTRLG  +GR+  SL+P DP+F GR+VATFHNQRD+IFFR
Sbjct: 229 MKRKGKEPTEHKPEVILNNFTTRLGHSIGRMFASLYPHDPHFVGRQVATFHNQRDYIFFR 288

Query: 253 HHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
           +HRY+F+S++                           +QE GPRFT+KL SLQ GTFDSK
Sbjct: 289 YHRYLFKSEKK------------------------VGIQELGPRFTLKLRSLQKGTFDSK 343

Query: 313 GGEYEWVHK-PEMDTSRRRFFL 333
            GEYEWVHK  EMDTSRR+F L
Sbjct: 349 YGEYEWVHKRHEMDTSRRKFHL 343

[Close]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot
Match: Q9H9Y2 (Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2)

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-72
Identity = 154/326 (47.24%), Postives = 203/326 (62.27%), Query Frame = 0


Query: 9   GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIEN 68
           G   S IKNK++R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N
Sbjct: 51  GFSISEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDN 110

Query: 69  TREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVI 128
            R  DET   P+DEE+      DEF+S   +   PK+LITT             +L +VI
Sbjct: 111 QRVYDETTVDPNDEEVAYDEATDEFASYFNKQTSPKILITTSDRPHGRTVRLCEQLSTVI 170

Query: 129 PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVV 188
           PN+H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V 
Sbjct: 171 PNSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVR 230

Query: 189 LRKDIKNHG-NPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDF 248
           LRK+IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+
Sbjct: 231 LRKEIKRRGKDPTEHIPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDY 290

Query: 249 IFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT 308
           IFFR HRYIF S++                           +QE GPRFT+KL SLQ GT
Sbjct: 291 IFFRFHRYIFRSEKK------------------------VGIQELGPRFTLKLRSLQKGT 349

Query: 309 FDSKGGEYEWVHKP-EMDTSRRRFFL 333
           FDSK GEYEWVHKP EMDTSRR+F L
Sbjct: 351 FDSKYGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot
Match: Q7TND5 (Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2)

HSP 1 Score: 275.0 bits (702), Expect = 1.1e-72
Identity = 154/326 (47.24%), Postives = 204/326 (62.58%), Query Frame = 0


Query: 9   GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIEN 68
           G   S IKNK++R   H      K+ +++ +  A+   +K+   LG++ PP+ +P+TI+N
Sbjct: 51  GFSISEIKNKQRR---HLMFTRWKQQQRKEKLAAKKKLKKEREALGDKAPPKPVPKTIDN 110

Query: 69  TREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVI 128
            R  DET   P+DEE+      DEF+S   R   PK+LITT             +L +VI
Sbjct: 111 QRVYDETTVDPNDEEVAYDEATDEFASYFNRQTSPKILITTSDRPHGRTVRLCEQLSTVI 170

Query: 129 PNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVV 188
           P++H Y R    LKKII    A+DFT L+V++  R+  +GL++  LP+GPTAHFK+S+V 
Sbjct: 171 PDSHVYYRRGLALKKIIPQCIARDFTDLIVINEDRKTPNGLILSHLPNGPTAHFKMSSVR 230

Query: 189 LRKDIKNHG-NPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDF 248
           LRK+IK  G +PT H PE++L NFTTRLG  +GR+  SLFP +P F GR+VATFHNQRD+
Sbjct: 231 LRKEIKRRGKDPTEHVPEIILNNFTTRLGHSIGRMFASLFPHNPQFIGRQVATFHNQRDY 290

Query: 249 IFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGT 308
           IFFR HRYIF+S++                           +QE GPRFT+KL SLQ GT
Sbjct: 291 IFFRFHRYIFKSEKK------------------------VGIQELGPRFTLKLRSLQKGT 349

Query: 309 FDSKGGEYEWVHKP-EMDTSRRRFFL 333
           FDSK GEYEWVHKP EMDTSRR+F L
Sbjct: 351 FDSKYGEYEWVHKPREMDTSRRKFHL 349

[Close]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot
Match: Q6IQU6 (Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1)

HSP 1 Score: 273.9 bits (699), Expect = 2.5e-72
Identity = 159/322 (49.38%), Postives = 206/322 (63.98%), Query Frame = 0


Query: 13  SMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRKIPRTIENTREV 72
           S IKNK++R  +   LK +K+ +KR   K +   E++AL+  ++ PP+++P+TIEN R  
Sbjct: 36  SEIKNKQRRHTMFLKLKEEKR-KKRMELKKKKKKERKALD--DKAPPKEVPKTIENQRIY 95

Query: 73  DETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAH 132
           DET   P+DEE+      DEFS+   R   PKVLITT          F  +L +VIP+A+
Sbjct: 96  DETTVNPEDEEVAFDEGTDEFSAYFNRLTNPKVLITTSDRPRGRTVRFCDQLATVIPHAY 155

Query: 133 YYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKD 192
            Y R    LKK+I    ++ FT LMV++  R+  +G+++  LPDGPTAHFK+S+V LRK+
Sbjct: 156 VYYRRGLALKKVIPQCISRGFTYLMVINEDRKVPNGMVLCHLPDGPTAHFKVSSVRLRKE 215

Query: 193 IKNHG-NPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFR 252
           +K  G NPT H PE++L NFTTRLG  +GRL  +LFP DP F GR+VATFHNQRDFIFFR
Sbjct: 216 MKRRGKNPTEHSPEVILNNFTTRLGHSIGRLFAALFPHDPQFVGRQVATFHNQRDFIFFR 275

Query: 253 HHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSK 312
            HRYIF           KN+ K               +QE GPRFT+KL SLQ GTFDSK
Sbjct: 276 FHRYIF-----------KNEKK-------------VGIQELGPRFTLKLRSLQKGTFDSK 330

Query: 313 GGEYEWVHK-PEMDTSRRRFFL 333
            GEYEWVHK  EMD+SRR+F L
Sbjct: 336 FGEYEWVHKRHEMDSSRRKFHL 330

[Close]

BLAST of Clc10G16280 vs. ExPASy TrEMBL
Match: A0A1S3B854 (ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 2.8e-180
Identity = 323/332 (97.29%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRKDIKNHGNPT HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. ExPASy TrEMBL
Match: A0A5A7UHC7 (Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006030 PE=4 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 2.8e-180
Identity = 323/332 (97.29%), Postives = 328/332 (98.80%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEEKKNKGIIPSMIKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRKDIKNHGNPT HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKDIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSKDTKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKDTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. ExPASy TrEMBL
Match: A0A0A0LH42 (Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 SV=1)

HSP 1 Score: 629.8 bits (1623), Expect = 6.5e-177
Identity = 316/332 (95.18%), Postives = 325/332 (97.89%), Query Frame = 0


Query: 1   MGEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPR 60
           MGEEKKNK I+PS IKNKEKRAEVHANLK+QKKLEKR+RAKARDAAEKQALELGEELPPR
Sbjct: 1   MGEEKKNKVIVPSTIKNKEKRAEVHANLKHQKKLEKRKRAKARDAAEKQALELGEELPPR 60

Query: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAF 120
           KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPK+LITTCRFNSTIGPAF
Sbjct: 61  KIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKILITTCRFNSTIGPAF 120

Query: 121 ISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTA 180
           ISELLSVIPNAHYYKRGTNDLKKI+EYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPTA
Sbjct: 121 ISELLSVIPNAHYYKRGTNDLKKIVEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPTA 180

Query: 181 HFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVAT 240
           HFKISNVVLRK+IKNHGNPT HQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV T
Sbjct: 181 HFKISNVVLRKEIKNHGNPTGHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVVT 240

Query: 241 FHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKL 300
           FHNQRDFIFFRHHRYIFESKENKKE+DSK KSK TKGEKV QQKV+ARLQECGPRFTMKL
Sbjct: 241 FHNQRDFIFFRHHRYIFESKENKKEADSKKKSKGTKGEKVPQQKVIARLQECGPRFTMKL 300

Query: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 ISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 332

[Close]

BLAST of Clc10G16280 vs. ExPASy TrEMBL
Match: A0A6J1DPH5 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106 PE=4 SV=1)

HSP 1 Score: 613.6 bits (1581), Expect = 4.8e-172
Identity = 311/333 (93.39%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 1   MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNSTIGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSTIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPT 180
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVA 240
           AHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV 
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK 300
           TFHNQRDFIFFRHHRYIF+SKENKKE+DSK+ SKD KGEKV +QKV+ARLQECGPRFTMK
Sbjct: 241 TFHNQRDFIFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPKQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of Clc10G16280 vs. ExPASy TrEMBL
Match: A0A6J1DT48 (ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909 PE=4 SV=1)

HSP 1 Score: 613.2 bits (1580), Expect = 6.3e-172
Identity = 310/333 (93.09%), Postives = 321/333 (96.40%), Query Frame = 0


Query: 1   MGEEKKNK-GIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPP 60
           MGEEKKNK  IIPSMIKNKEKR EVHANLK QKKLEKR+RAKARDA+EKQALELGEE PP
Sbjct: 1   MGEEKKNKRDIIPSMIKNKEKRKEVHANLKQQKKLEKRKRAKARDASEKQALELGEEPPP 60

Query: 61  RKIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPA 120
           R IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKR  LPKVLITTCRFNS+IGP+
Sbjct: 61  RMIPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRHTLPKVLITTCRFNSSIGPS 120

Query: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPT 180
           FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLP+GPT
Sbjct: 121 FISELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPEGPT 180

Query: 181 AHFKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVA 240
           AHFKISNVVLRKDIKNHGNPTSH+PELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRV 
Sbjct: 181 AHFKISNVVLRKDIKNHGNPTSHEPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVV 240

Query: 241 TFHNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMK 300
           TFHNQRDF+FFRHHRYIF+SKENKKE+DSK+ SKD KGEKV QQKV+ARLQECGPRFTMK
Sbjct: 241 TFHNQRDFVFFRHHRYIFDSKENKKEADSKSNSKDAKGEKVPQQKVIARLQECGPRFTMK 300

Query: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL
Sbjct: 301 LISLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333

[Close]

BLAST of Clc10G16280 vs. TAIR 10
Match: AT4G01560.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 488.0 bits (1255), Expect = 5.9e-138
Identity = 245/331 (74.02%), Postives = 285/331 (86.10%), Query Frame = 0


Query: 2   GEEKKNKGIIPSMIKNKEKRAEVHANLKNQKKLEKRRRAKARDAAEKQALELGEELPPRK 61
           G EK+N  I+PSMIKNK+KR++V+A  K++KKLEK+++ +ARDAAEK+ALELGEE P + 
Sbjct: 27  GGEKRNV-ILPSMIKNKDKRSKVYAKQKHEKKLEKQKKIRARDAAEKRALELGEEPPQKM 86

Query: 62  IPRTIENTREVDETVCKPDDEELFAGNDADEFSSIIKRDILPKVLITTCRFNSTIGPAFI 121
           IP+TIENTRE DETVC+PDDEELFA  DADEF+ +++R+I PKVL+TTCRFNST GPA I
Sbjct: 87  IPKTIENTRESDETVCRPDDEELFADIDADEFNPVLRREIAPKVLLTTCRFNSTRGPALI 146

Query: 122 SELLSVIPNAHYYKRGTNDLKKIIEYANAKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAH 181
           SELLSVIPN+HY KRGT DLKKI+EYA  KDFTSL+VVHT+RR+ D LLIIGLP+GPTAH
Sbjct: 147 SELLSVIPNSHYQKRGTYDLKKIVEYATKKDFTSLIVVHTNRREPDALLIIGLPNGPTAH 206

Query: 182 FKISNVVLRKDIKNHGNPTSHQPELVLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATF 241
           FK+SN+VLRKDIKNHGNPTSHQPELVL NFTTRLG RVGR  QSLFP DPNFRGRRV TF
Sbjct: 207 FKLSNLVLRKDIKNHGNPTSHQPELVLNNFTTRLGNRVGRFFQSLFPPDPNFRGRRVVTF 266

Query: 242 HNQRDFIFFRHHRYIFESKENKKESDSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLI 301
           HNQRDFIFFRHHRYIFE+KE          SK  KG+   ++ +  RLQECGPRFT+KL+
Sbjct: 267 HNQRDFIFFRHHRYIFETKE----------SKSDKGK---EETIKPRLQECGPRFTLKLV 326

Query: 302 SLQHGTFDSKGGEYEWVHKPEMDTSRRRFFL 333
           +LQHGTFD+KGGE+EWVHKPEMDTSRRRFFL
Sbjct: 327 TLQHGTFDTKGGEFEWVHKPEMDTSRRRFFL 343

[Close]

BLAST of Clc10G16280 vs. TAIR 10
Match: AT1G63780.1 (Ribosomal RNA processing Brix domain protein )

HSP 1 Score: 150.2 bits (378), Expect = 2.9e-36
Identity = 103/306 (33.66%), Postives = 160/306 (52.29%), Query Frame = 0


Query: 31  QKKLE-KRRRAKARDAAEKQALELGEELPPRKIPRTIENTREVDETVCKPDDEELFAGND 90
           +K LE   R+   +    ++AL+ G+ +P        +  +E+D    +  +  +   + 
Sbjct: 15  RKSLEGDERKVYEQKRLIREALQEGKPIPTELRNVEAKLRQEID---LEDQNTAVPRSHI 74

Query: 91  ADEFSSIIKRDILPKVLITTCRFNSTIGPAFISELLSVIPNAHYYKRGTNDLKKIIEYAN 150
            DE+++  + D  PK+L+TT R  S     F  EL  V PN+    RG+  + +IIE A 
Sbjct: 75  DDEYANATEAD--PKILLTTSRNPSAPLIRFTKELKFVFPNSQRINRGSQVISEIIETAR 134

Query: 151 AKDFTSLMVVHTSRRKLDGLLIIGLPDGPTAHFKISNVVLRKDI---KNHGNPTSHQPEL 210
           + DFT +++VH  R   DGL+I  LP GPTA+F + NVV R DI   K+ G      P L
Sbjct: 135 SHDFTDVILVHEHRGVPDGLIISHLPFGPTAYFGLLNVVTRHDISDKKSIGKMPEQYPHL 194

Query: 211 VLTNFTTRLGLRVGRLIQSLFPQDPNFRGRRVATFHNQRDFIFFRHHRYIFESKENKKES 270
           +  NFTT++G RVG +++ +FP  P    +R+ TF NQ D+I FR+H Y           
Sbjct: 195 IFNNFTTQMGQRVGNILKHIFPA-PKLDAKRIVTFSNQSDYISFRNHVY----------- 254

Query: 271 DSKNKSKDTKGEKVLQQKVVARLQECGPRFTMKLISLQHGTFDSKGGEYEWVHKPEMDTS 330
                 K   G K ++      L+E GPRF ++L  ++ GT +    E EWV +P M+TS
Sbjct: 255 -----DKGEGGPKSIE------LKEIGPRFELRLYQVKLGTVEQNEAEIEWVIRPYMNTS 292

Query: 331 RRRFFL 333
           ++R F+
Sbjct: 315 KKRKFI 292

The following BLAST results are available for this feature:

BLAST of Clc10G16280 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443155.1	5.8e-180	97.29	PREDICTED: ribosome production factor 1 isoform X1 [Cucumis melo] >XP_008443156....	[more]
XP_038906205.1	2.4e-178	95.78	ribosome production factor 1 [Benincasa hispida]	[more]
XP_031737500.1	1.3e-176	95.18	ribosome production factor 1 [Cucumis sativus] >KGN59366.1 hypothetical protein ...	[more]
XP_022156150.1	1.0e-171	93.39	ribosome production factor 1-like [Momordica charantia] >XP_022156151.1 ribosome...	[more]
XP_022155906.1	1.3e-171	93.09	ribosome production factor 1-like [Momordica charantia]	[more]

BLAST of Clc10G16280 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5R631	4.9e-73	47.55	Ribosome production factor 1 OS=Pongo abelii OX=9601 GN=RPF1 PE=2 SV=1	[more]
Q8AVP1	4.9e-73	48.14	Ribosome production factor 1 OS=Xenopus laevis OX=8355 GN=rpf1 PE=2 SV=1	[more]
Q9H9Y2	1.1e-72	47.24	Ribosome production factor 1 OS=Homo sapiens OX=9606 GN=RPF1 PE=1 SV=2	[more]
Q7TND5	1.1e-72	47.24	Ribosome production factor 1 OS=Mus musculus OX=10090 GN=Rpf1 PE=2 SV=2	[more]
Q6IQU6	2.5e-72	49.38	Ribosome production factor 1 OS=Danio rerio OX=7955 GN=rpf1 PE=2 SV=1	[more]

BLAST of Clc10G16280 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B854	2.8e-180	97.29	ribosome production factor 1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486828 ...	[more]
A0A5A7UHC7	2.8e-180	97.29	Ribosome production factor 1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A0A0LH42	6.5e-177	95.18	Brix domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G814330 PE=4 S...	[more]
A0A6J1DPH5	4.8e-172	93.39	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111023106...	[more]
A0A6J1DT48	6.3e-172	93.09	ribosome production factor 1-like OS=Momordica charantia OX=3673 GN=LOC111022909...	[more]

BLAST of Clc10G16280 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G01560.1	5.9e-138	74.02	Ribosomal RNA processing Brix domain protein	[more]
AT1G63780.1	2.9e-36	33.66	Ribosomal RNA processing Brix domain protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 25..45
None	No IPR available	GENE3D	3.40.50.10480		coord: 103..299 e-value: 6.7E-37 score: 128.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 40..57
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 31..57
None	No IPR available	PANTHER	PTHR22734:SF3	RIBOSOME PRODUCTION FACTOR 1	coord: 1..332
None	No IPR available	SUPERFAMILY	52954	Class II aaRS ABD-related	coord: 103..306
IPR007109	Brix domain	SMART	SM00879	Brix_2	coord: 106..303 e-value: 3.7E-55 score: 199.2
IPR007109	Brix domain	PFAM	PF04427	Brix	coord: 119..301 e-value: 2.8E-32 score: 112.4
IPR007109	Brix domain	PROSITE	PS50833	BRIX	coord: 103..309 score: 41.217625
IPR044281	U3 snoRNP protein/Ribosome production factor 1	PANTHER	PTHR22734	U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN PROTEIN IMP4	coord: 1..332

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G16280.1	Clc10G16280.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000460	maturation of 5.8S rRNA
biological_process	GO:0000470	maturation of LSU-rRNA
biological_process	GO:0006364	rRNA processing
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0030687	preribosome, large subunit precursor
molecular_function	GO:0042134	rRNA primary transcript binding
molecular_function	GO:0019843	rRNA binding