Clc10G15620 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G15620
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Mediator of RNA polymerase II transcription subunit 4
Location	ClcChr10: 29303771 .. 29305698 (+)
RNA-Seq Expression	Clc10G15620
Synteny	Clc10G15620

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTCAGCATCAAATTGTTCAGTCTCCAGCAAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCTCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACCCCCCCCTCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAACCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCACCCTTTACCTCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCACTCTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCCAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGACCTCGACGGGTTAAAACAAAGGATGATACTGAAAACGAGTCTTTGTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCATATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGAGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAGCTATAGAGCCCATGATTGAGCCTCCAACAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTATTGAATTACCTAGAGATTTACCTATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGACGATGATAGTAGTGATTACACCAGTGATGAAGGAAGCTCTGAAGATGATGATTGAGTGGAACGGCCGCCCTAAATGACCTCTTGTTAACAAAAGAGGTGAAGGTTTGCGTTTGCCTAGAAGCAGCAACTCTTAAAGAGTGTATAATACTTCACCGATGACCATATATGCATGAGGCCAAGCAATCTGCAAGGGGGAAGGTTACATTTCATACTCTCAAACTTACATGTTACTGATGATGTGTTTTGCATTCACAAGCAACTTGAAACACAAATCTTTTCAACTTTTTTAACTTGAAAAGCTGTAACTCTCTTGGCTTAACTTCTTTTACTCGTGTTTCATTTGTTTTTGAATGTGAGCTTCAATTTAACTCTCTTAGGGGGTGGATGCATTTTAAACCTGAGTAAACAGTGTTGTAACTTTCATACCATATCGTAAAGTGCAGTATATAAGCTTCTAGGGGTTCTTGAATGAATTATTGACTCAGTATTATGATTTGAAGGAAAGTGATTAGATTATTTTATGTTGGTGCCATTCAGAGTTGAATATTGTGTATTCCAAGTTCTGACCAGATTGTGTATGTTATGACTGCTTGTGAAAGAGAGTGTTTTGAAATGAAGATTGTTGTTGTGGAAGCTTTCTTCTCCTTTGGTGATGAATATGAAGATTTAAGAAATTTTTAAAAAGCTATGACATCCTTGGCTATTTTAGAAGAAACTTCAGATTCTGAAGTCTTGAAGCAGCTGATGGGGATTTGTGAATTTTAA

mRNA sequence

ATGCTTCAGCATCAAATTGTTCAGTCTCCAGCAAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCTCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACCCCCCCCTCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAACCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCACCCTTTACCTCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCACTCTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCCAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGACCTCGACGGGTTAAAACAAAGGATGATACTGAAAACGAGTCTTTGTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCATATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGAGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAGCTATAGAGCCCATGATTGAGCCTCCAACAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTATTGAATTACCTAGAGATTTACCTATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGACGATGATAGTAAAGAAACTTCAGATTCTGAAGTCTTGAAGCAGCTGATGGGGATTTGTGAATTTTAA

Coding sequence (CDS)

ATGCTTCAGCATCAAATTGTTCAGTCTCCAGCAAGATTGGGGTTGACAAATCCCAATTCTCCCTCTATTCAAAACCCTACCCCTCCCAAATTGCCCTCTTCTCAACAATCCCACCACCAAAATCAACCCAATCTCTCTTCTCCCACCCCCCCCTCCACTCTTCTCCCTCTCCTTCCTCCTCTTCCTAGAGCTCAAGCTCTTCTCCTGCAAATGGCTTCATTAGCTTCCAAGCTCTTTGAAGTCTCCCCCAACCGCTCCCTTTGGCTCACTGCATTTCGGGGTTCTCTTCCCACTTTTCTTACTTCTCAAACCCACTCCTCACCCTTTACCTCTCTTGATTCTACTCCCTCTACTTCCAAAGAAATTTTGTCACTCTTTAATGTTCTGCAGACCCAGTTGTTTGAAGCTGTTGCCGAGCTTCAGGAGATTCTTGATTTGCAAGACTCTAAGCAGAAGATTGCTTATGAGATACGGGCCAAAGATGCTGCTCTTCGTGCTTTTGCTAATAAGCTCAAGGATGCTGAGCAGGTTCTTGATGTTTTGTTTGATGATTATGCGGATTATCAGCGACCTCGACGGGTTAAAACAAAGGATGATACTGAAAACGAGTCTTTGTGTTCGACTACAACTACAGTTGCATCCCAGTTGAGATTATCTGATATATTGTCATATGCTCATAGGATAAGCTATACTACTTTTGCACCACCTGAATTTGGTGCTGGACAAGCTCCATTACGTGGAGCACTTCCCCCTGCTCCGCAAGACGAGCAAATGCGTGCGTCTCAGTTGTATAATTTTGCAAACCTTGATGTTGGCTTGCCTAAAGCAGTTGAAAGCACTGAGAAAGCTATAGAGCCCATGATTGAGCCTCCAACAGATGCTAATCCTCTTTCTAATATGGCTGCTATTCAGGGTCTGCTTCCTCCAAATATTACTGTCCCATCTGGTTGGAAACCTGGAATGCCTATTGAATTACCTAGAGATTTACCTATGCCCCCTCCTGGATGGAAGCCTGGGGACCCTGTGCCATTACCCCCAATGGACTCTCTTCCTGTTACTAGAGTTGATGAGCCACAATTGAGGCCTAATGCTCTTCCAGGATTGCACAAACCTCCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTTGATCAAGACGATGATAGTAAAGAAACTTCAGATTCTGAAGTCTTGAAGCAGCTGATGGGGATTTGTGAATTTTAA

Protein sequence

MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSEVLKQLMGICEF

Homology

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BLAST of Clc10G15620 vs. NCBI nr
Match: XP_038882754.1 (mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida])

HSP 1 Score: 711.4 bits (1835), Expect = 4.3e-201
Identity = 375/402 (93.28%), Postives = 382/402 (95.02%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGL NPNSPSIQNPTPPKLP SQQSHHQNQ N+SSPTP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLANPNSPSIQNPTPPKLPPSQQSHHQNQLNISSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP TSLDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTSLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVK KDD ENESLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKMKDDAENESLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEP----PTDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLD+GLPKAVESTEK IEPMIEP    PTDANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDIGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMA+IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD
Sbjct: 301 LSNMASIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLRPNA PGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRPNAHPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 400

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BLAST of Clc10G15620 vs. NCBI nr
Match: XP_008449288.1 (PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] >KAA0047287.1 mediator of RNA polymerase II transcription subunit 4 [Cucumis melo var. makuwa])

HSP 1 Score: 699.5 bits (1804), Expect = 1.7e-197
Identity = 372/402 (92.54%), Postives = 378/402 (94.03%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ N+SS TP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP T LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+   ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPP----TDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEK IEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 400

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BLAST of Clc10G15620 vs. NCBI nr
Match: XP_022143910.1 (mediator of RNA polymerase II transcription subunit 4 [Momordica charantia])

HSP 1 Score: 693.0 bits (1787), Expect = 1.6e-195
Identity = 366/403 (90.82%), Postives = 380/403 (94.29%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLP SQQSHHQNQPNLSSPTP STLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQT SSP T LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADY+RP+RVKTKDD EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEP----PTDANP 300
           GQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEK IEPMIEP    PTDANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+N+AAIQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVD 360

Query: 361 EP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDS + +  E
Sbjct: 361 EPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDE 401

[Close]

BLAST of Clc10G15620 vs. NCBI nr
Match: XP_004142109.1 (mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN54188.1 hypothetical protein Csa_017920 [Cucumis sativus])

HSP 1 Score: 688.3 bits (1775), Expect = 3.9e-194
Identity = 366/399 (91.73%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ NLSS TP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP T LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRR KT+ D ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPPTDANPLSN- 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEK IEPMIEPP    P +N 
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP 300

Query: 301 MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ 360
           +AAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQ
Sbjct: 301 LAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEPQ 360

Query: 361 LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 397

[Close]

BLAST of Clc10G15620 vs. NCBI nr
Match: XP_023518528.1 (mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 673.3 bits (1736), Expect = 1.3e-189
Identity = 357/402 (88.81%), Postives = 375/402 (93.28%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ NLSSPTP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQT S+P T LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQ  +RVKT DD ENESLCS +TTVASQL+LSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQGHKRVKTTDDVENESLCS-STTVASQLKLSDILSYAHKISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEP----PTDANP 300
           GQAPLRGALPPAPQ+EQMRASQLY+FA+LDVGLPK+VESTEK IEPMIEP    PTDANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYSFADLDVGLPKSVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+ +A IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLR NALPGLH+P EPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE 400

[Close]

BLAST of Clc10G15620 vs. ExPASy Swiss-Prot
Match: Q9LZ00 (Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX=3702 GN=MED4 PE=1 SV=1)

HSP 1 Score: 485.3 bits (1248), Expect = 6.6e-136
Identity = 274/422 (64.93%), Postives = 329/422 (77.96%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPSSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P   SS QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+    S LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQ 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K ++D E   NES  S++TTV+SQ
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNES-SSSSTTVSSQ 240

Query: 241 LRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK 300
           L+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Sbjct: 241 LKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPK 300

Query: 301 AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPG 360
            VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMP+ELPRDLP+PPPG
Sbjct: 301 TVENMEKKVEALIEPPPPPEAM-DISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPPPG 360

Query: 361 WKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKET 397
           WKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL+ DD S  +
Sbjct: 361 WKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDILEDDDSSDYS 418

[Close]

BLAST of Clc10G15620 vs. ExPASy Swiss-Prot
Match: Q54D00 (Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium discoideum OX=44689 GN=med4 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 2.7e-04
Identity = 58/186 (31.18%), Postives = 79/186 (42.47%), Query Frame = 0


Query: 114 STPSTSKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIRAKDAALRAFANK 173
           S  +T   +L L N L    ++++  + +L++   +Q    +I  EI  KD  +   A  
Sbjct: 60  SNNATPNMVLQLMNHLIDVDKIYQNTLKKLEKHQKIQKEITEIQKEIEEKDKLISTLALN 119

Query: 174 LKDAEQVLDVLFDDYADYQRPRRVKTKDDTENESL---------CSTTTTVASQLRLSDI 233
           LKD E  L+       D          D   NE L          S    V  ++   D+
Sbjct: 120 LKDIESFLENELSQ--DNVNINNGNASDGIVNEVLIDLKQPDDAASMDNIVNREVSPEDL 179

Query: 234 LSYAHRISYTTFAPPEFG-AGQAPLRGAL-PPAPQDEQMRASQL-----------YNFAN 275
           +SYAH+IS TT AP  FG    APL     PPAPQDE MR+S L           Y  A 
Sbjct: 180 ISYAHKISGTTSAP--FGYQPNAPLASLFKPPAPQDEMMRSSVLFTKPPPHVLKYYGLAE 239

[Close]

BLAST of Clc10G15620 vs. ExPASy TrEMBL
Match: A0A5A7TZC1 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuwa OX=1194695 GN=MED4 PE=3 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 8.2e-198
Identity = 372/402 (92.54%), Postives = 378/402 (94.03%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ N+SS TP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP T LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+   ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPP----TDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEK IEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 400

[Close]

BLAST of Clc10G15620 vs. ExPASy TrEMBL
Match: A0A1S3BLP6 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN=LOC103491209 PE=3 SV=1)

HSP 1 Score: 699.5 bits (1804), Expect = 8.2e-198
Identity = 372/402 (92.54%), Postives = 378/402 (94.03%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ N+SS TP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNVSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP T LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTFLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRRVKT+   ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRVKTEGGAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPP----TDANP 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEK IEPMIEPP     DANP
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRVDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           LSNMAAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVD
Sbjct: 301 LSNMAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 400

[Close]

BLAST of Clc10G15620 vs. ExPASy TrEMBL
Match: A0A6J1CQ51 (Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=3673 GN=LOC111013711 PE=3 SV=1)

HSP 1 Score: 693.0 bits (1787), Expect = 7.7e-196
Identity = 366/403 (90.82%), Postives = 380/403 (94.29%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQI QSPARLGL NPNSPSIQNPTPPKLP SQQSHHQNQPNLSSPTP STLLPLLPP
Sbjct: 1   MLQHQIAQSPARLGLNNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMA+LASKLFEVSPNRSLWLTAFRGSLPTFL SQT SSP T LD+TPSTSK
Sbjct: 61  LPRAQALLLQMATLASKLFEVSPNRSLWLTAFRGSLPTFLNSQTQSSPSTPLDATPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADY+RP+RVKTKDD EN+SLCS  TTVASQL+LSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYRRPQRVKTKDDVENDSLCS--TTVASQLKLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEP----PTDANP 300
           GQAPLRGALPPAPQ+EQMRASQLYNFA+LDVGLPKAVESTEK IEPMIEP    PTDANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYNFADLDVGLPKAVESTEKTIEPMIEPPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+N+AAIQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LANLAAIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVPRVD 360

Query: 361 EP-QLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EP QLRPNALPGLHKPPEPIQVR VQLDILDQDDDS + +  E
Sbjct: 361 EPQQLRPNALPGLHKPPEPIQVRPVQLDILDQDDDSSDYTSDE 401

[Close]

BLAST of Clc10G15620 vs. ExPASy TrEMBL
Match: A0A0A0KXB7 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659 GN=MED4 PE=3 SV=1)

HSP 1 Score: 688.3 bits (1775), Expect = 1.9e-194
Identity = 366/399 (91.73%), Postives = 374/399 (93.73%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQNQ NLSS TP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNQSNLSSSTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQT SSP T LDSTPS+SK
Sbjct: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTQSSPSTLLDSTPSSSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLK+AEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKEAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQRPRR KT+ D ENESLCS  TTVASQLRLSDILSYAHRISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQRPRRDKTEGDAENESLCS--TTVASQLRLSDILSYAHRISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEPPTDANPLSN- 300
           GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEK IEPMIEPP    P +N 
Sbjct: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKTIEPMIEPPAPVRPDANP 300

Query: 301 MAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVDEPQ 360
           +AAIQGLLPPNITVPSGWKPGMP+ELP DLPMPPPGWKPGDPV LPPMDSLPVTRVDEPQ
Sbjct: 301 LAAIQGLLPPNITVPSGWKPGMPVELPGDLPMPPPGWKPGDPVRLPPMDSLPVTRVDEPQ 360

Query: 361 LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           LRPNALPGLHKPPEPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSSDYTSDE 397

[Close]

BLAST of Clc10G15620 vs. ExPASy TrEMBL
Match: A0A6J1HH73 (Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3662 GN=LOC111463518 PE=3 SV=1)

HSP 1 Score: 669.5 bits (1726), Expect = 9.1e-189
Identity = 356/402 (88.56%), Postives = 372/402 (92.54%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPSSQQSHHQNQPNLSSPTPPSTLLPLLPP 60
           MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLP SQQSHHQN  NLSSPTP STLLPLLPP
Sbjct: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTPPKLPPSQQSHHQNPSNLSSPTPSSTLLPLLPP 60

Query: 61  LPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPTFLTSQTHSSPFTSLDSTPSTSK 120
           LPRAQALLLQMASLASKLFEV PNR+LWLTAFRGSLPTFL SQT S+P T LDSTPSTSK
Sbjct: 61  LPRAQALLLQMASLASKLFEVYPNRALWLTAFRGSLPTFLNSQTQSAPSTPLDSTPSTSK 120

Query: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIRAKDAALRAFANKLKDAEQVLDV 180
           EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE+RAKDAALRAFANKLKDAEQVLDV
Sbjct: 121 EILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEMRAKDAALRAFANKLKDAEQVLDV 180

Query: 181 LFDDYADYQRPRRVKTKDDTENESLCSTTTTVASQLRLSDILSYAHRISYTTFAPPEFGA 240
           LFDDYADYQ  +RVKT DD ENESLCS TTTVASQL+LSDILSYAH+ISYTTFAPPEFGA
Sbjct: 181 LFDDYADYQGHKRVKTSDDVENESLCS-TTTVASQLKLSDILSYAHKISYTTFAPPEFGA 240

Query: 241 GQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPKAVESTEKAIEPMIEP----PTDANP 300
           GQAPLRGALPPAPQ+EQMRASQLY FA+LDVGLPK+VESTEK IEPMIE     PTDANP
Sbjct: 241 GQAPLRGALPPAPQEEQMRASQLYTFADLDVGLPKSVESTEKTIEPMIEAPAPVPTDANP 300

Query: 301 LSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPGWKPGDPVPLPPMDSLPVTRVD 360
           L+ +A IQGLLPPNITVPSGWKPGMP+ELPRDLPMPPPGWKPGDPVPLPP+DSLPV RVD
Sbjct: 301 LA-LAGIQGLLPPNITVPSGWKPGMPVELPRDLPMPPPGWKPGDPVPLPPLDSLPVARVD 360

Query: 361 EPQLRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKETSDSE 399
           EPQLR NALPGLH+P EPIQVRHVQLDILDQDDDS + +  E
Sbjct: 361 EPQLRHNALPGLHRPQEPIQVRHVQLDILDQDDDSSDYASEE 400

[Close]

BLAST of Clc10G15620 vs. TAIR 10
Match: AT5G02850.1 (hydroxyproline-rich glycoprotein family protein )

HSP 1 Score: 485.3 bits (1248), Expect = 4.7e-137
Identity = 274/422 (64.93%), Postives = 329/422 (77.96%), Query Frame = 0


Query: 1   MLQHQIVQSPARLGLTNPNSPSIQNPTP-----PKLPSSQQSHH---QNQPNL------- 60
           MLQHQIVQSPARLGLT P SPS+QNPTP     P   SS QS H   Q QPNL       
Sbjct: 1   MLQHQIVQSPARLGLTGPGSPSVQNPTPTRHGHPTSSSSSQSQHQQIQQQPNLLPSSTVA 60

Query: 61  -------SSPTPPSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRSLWLTAFRGSLPT 120
                  S+    S LL LLPPLPRAQALL QMA L SKLF+VSPNR++WL+AFRGSLP+
Sbjct: 61  AASSASASAAVSSSALLSLLPPLPRAQALLQQMAVLTSKLFDVSPNRAIWLSAFRGSLPS 120

Query: 121 FLTSQTHSSPFTSLDSTPSTSKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIR 180
           FL+S +   P    + +PS++KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EI+
Sbjct: 121 FLSSHSLPPPPPLENPSPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKVAREIK 180

Query: 181 AKDAALRAFANKLKDAEQVLDVLFDDYADYQRPRRVKTKDDTE---NESLCSTTTTVASQ 240
           +KD++L AFANKLKDAE+VLD+L DDY+DY++P+R K ++D E   NES  S++TTV+SQ
Sbjct: 181 SKDSSLLAFANKLKDAERVLDMLVDDYSDYRKPKRSKIEEDDEDNDNES-SSSSTTVSSQ 240

Query: 241 LRLSDILSYAHRISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYNFANLDVGLPK 300
           L+L DIL+YAH+ISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLY FA+LD+GLPK
Sbjct: 241 LKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYTFADLDIGLPK 300

Query: 301 AVESTEKAIEPMIEPPTDANPLSNMAAIQGLLPPNITVPSGWKPGMPIELPRDLPMPPPG 360
            VE+ EK +E +IEPP     + +++AI  LLPPNI VPSGWKPGMP+ELPRDLP+PPPG
Sbjct: 301 TVENMEKKVEALIEPPPPPEAM-DISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPPPG 360

Query: 361 WKPGDPVPLPPMDSLPVTRVDEPQ-LRPNALPGLHKPPEPIQVRHVQLDILDQDDDSKET 397
           WKPGDPV LPP++S+   R ++ Q +RP+   GLH+PP+ IQVR VQLDIL+ DD S  +
Sbjct: 361 WKPGDPVVLPPLESIAAPRAEDHQHMRPS--QGLHRPPDVIQVRAVQLDILEDDDSSDYS 418

The following BLAST results are available for this feature:

BLAST of Clc10G15620 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038882754.1	4.3e-201	93.28	mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]	[more]
XP_008449288.1	1.7e-197	92.54	PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Cucumis melo] ...	[more]
XP_022143910.1	1.6e-195	90.82	mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]	[more]
XP_004142109.1	3.9e-194	91.73	mediator of RNA polymerase II transcription subunit 4 [Cucumis sativus] >KGN5418...	[more]
XP_023518528.1	1.3e-189	88.81	mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pep...	[more]

BLAST of Clc10G15620 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LZ00	6.6e-136	64.93	Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana OX...	[more]
Q54D00	2.7e-04	31.18	Putative mediator of RNA polymerase II transcription subunit 4 OS=Dictyostelium ...	[more]

BLAST of Clc10G15620 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TZC1	8.2e-198	92.54	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo var. makuw...	[more]
A0A1S3BLP6	8.2e-198	92.54	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1CQ51	7.7e-196	90.82	Mediator of RNA polymerase II transcription subunit 4 OS=Momordica charantia OX=...	[more]
A0A0A0KXB7	1.9e-194	91.73	Mediator of RNA polymerase II transcription subunit 4 OS=Cucumis sativus OX=3659...	[more]
A0A6J1HH73	9.1e-189	88.56	Mediator of RNA polymerase II transcription subunit 4 OS=Cucurbita moschata OX=3...	[more]

BLAST of Clc10G15620 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G02850.1	4.7e-137	64.93	hydroxyproline-rich glycoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019258	Mediator complex, subunit Med4	PFAM	PF10018	Med4	coord: 129..269 e-value: 8.9E-8 score: 32.0
IPR019258	Mediator complex, subunit Med4	PANTHER	PTHR13208	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4	coord: 52..398
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..57

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G15620.2	Clc10G15620.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006357	regulation of transcription by RNA polymerase II
cellular_component	GO:0070847	core mediator complex
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity