Clc10G15610 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G15610
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionARGOS-like protein
LocationClcChr10: 29291752 .. 29292181 (+)
RNA-Seq ExpressionClc10G15610
SyntenyClc10G15610
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTAAATTGTAAGAAAATCATACGGTTAATTCTTGTTTGATCTGCAAAATCTCGGTATCTTCTTTCTTTGGTTAGATCTTTTCGTCGACGATTGACATAGAAAGCAAGAGAACCCCATGATCAATATTTTGATGGTCAATTATTGCAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGTTATTGGCTGTTTTGTTGTTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

mRNA sequence

ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTAAATTGTAAGAAAATCATACGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGTTATTGGCTGTTTTGTTGTTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

Coding sequence (CDS)

ATGGTGCAAACCATCGAGTGCGAAACGCTATTATTCAACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTAAATTGTAAGAAAATCATACGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTCTGGTGGTGCCGCCGCTTCCTCCTCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGTTATTGGCTGTTTTGTTGTTGTTGGCTTTCTCTTCTTCCCGTCGGATCCCCAACATTGCTGCTGAGGTGATGCAATAA

Protein sequence

MVQTIECETLLFNVSTLVVSLQERGFFGNIRLNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIPNIAAEVMQ
Homology
BLAST of Clc10G15610 vs. NCBI nr
Match: TQE05894.1 (hypothetical protein C1H46_008577 [Malus baccata])

HSP 1 Score: 58.2 bits (139), Expect = 4.9e-05
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 42 SVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIPNIA 97
          SVM L+V T  L++LPL++PPLPPPPL +L +PVL++AVL+LLAFS   ++PN+A
Sbjct: 35 SVMFLIVLTVFLVVLPLLLPPLPPPPLVLLFIPVLIMAVLILLAFSHLSQVPNMA 89

BLAST of Clc10G15610 vs. NCBI nr
Match: XP_022849189.1 (protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea var. sylvestris])

HSP 1 Score: 57.0 bits (136), Expect = 1.1e-04
Identity = 38/73 (52.05%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 18  VVSLQERGFFGNIR-LNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVL 77
           VV L E     N+R  + +K  RL S+ +L+  TASLL+LPL++PPLPPPPL +L LP+ 
Sbjct: 44  VVQLVEGRKSENLRSFSGRKTFRLESLFLLVCLTASLLILPLILPPLPPPPLMLLLLPIC 103

Query: 78  LLAVLLLLAFSSS 90
           +LA+L++LAF SS
Sbjct: 104 ILALLMILAFVSS 116

BLAST of Clc10G15610 vs. NCBI nr
Match: QHO44850.1 (uncharacterized protein DS421_6g174230 [Arachis hypogaea])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 36/64 (56.25%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 34  CKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIP 93
           C  +IR S+ M+L V T S+L+LPLV+PPLPPPPL +L LP+ +L  L LLAFSSS   P
Sbjct: 42  CALMIRYSA-MILAVVTLSILVLPLVLPPLPPPPLMLLFLPLFILLFLFLLAFSSSTTTP 101

Query: 94  NIAA 98
           N ++
Sbjct: 102 NFSS 104

BLAST of Clc10G15610 vs. NCBI nr
Match: QHN84568.1 (uncharacterized protein DS421_16g529750 [Arachis hypogaea])

HSP 1 Score: 55.8 bits (133), Expect = 2.4e-04
Identity = 35/64 (54.69%), Postives = 48/64 (75.00%), Query Frame = 0

Query: 34  CKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIP 93
           C  +IR S+ M+L+V T S+L+LPLV+PPLPPPPL +L LP+ +L  L L+AFSSS   P
Sbjct: 42  CALMIRYSA-MILVVVTLSILVLPLVLPPLPPPPLMLLFLPLFILLFLFLIAFSSSTTTP 101

Query: 94  NIAA 98
           N ++
Sbjct: 102 NFSS 104

BLAST of Clc10G15610 vs. NCBI nr
Match: CAA3019299.1 (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea])

HSP 1 Score: 55.1 bits (131), Expect = 4.2e-04
Identity = 32/55 (58.18%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 35  KKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSS 90
           +K  RL S+ +L+  TASLL+LPL++PPLPPPPL +L LP+ +LA+L++LAF SS
Sbjct: 62  QKTFRLESLFLLVCLTASLLILPLILPPLPPPPLMLLLLPICILALLMILAFVSS 116

BLAST of Clc10G15610 vs. ExPASy Swiss-Prot
Match: C7SFP6 (Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. pekinensis OX=51351 GN=ARGOS PE=2 SV=2)

HSP 1 Score: 46.2 bits (108), Expect = 2.5e-04
Identity = 30/63 (47.62%), Postives = 46/63 (73.02%), Query Frame = 0

Query: 40  LSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAF--SSSRRIPNIAA 99
           L S+++L+  TASLL+LPLV+PPLPPPP  +L +P+ ++ +L++LAF  SSS R  ++  
Sbjct: 74  LESLVILVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLIILAFMPSSSSRAKDVTR 133

Query: 100 EVM 101
             M
Sbjct: 134 TFM 136

BLAST of Clc10G15610 vs. ExPASy Swiss-Prot
Match: Q8RXL7 (ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 31  RLNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSR 90
           RL       L S++VL+  TASLL+LPL++PPLPPPP  +L +P+ ++ +L++LAF  S 
Sbjct: 64  RLISASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPSS 123

Query: 91  RIPNIAA 98
              ++++
Sbjct: 124 NSKHVSS 130

BLAST of Clc10G15610 vs. ExPASy Swiss-Prot
Match: Q8RWS1 (Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.3e-04
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 32 LNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRR 91
          LN   +I   SV +LL  +  LL+LP  +PPLPPPP  +L LP+LL+ +L+ LAFS S  
Sbjct: 19 LNGSSLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNE 78

Query: 92 IPNIAAE 99
           P++A E
Sbjct: 79 -PSLAVE 84

BLAST of Clc10G15610 vs. ExPASy TrEMBL
Match: A0A540N4D3 (Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008577 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 2.4e-05
Identity = 33/55 (60.00%), Postives = 46/55 (83.64%), Query Frame = 0

Query: 42 SVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIPNIA 97
          SVM L+V T  L++LPL++PPLPPPPL +L +PVL++AVL+LLAFS   ++PN+A
Sbjct: 35 SVMFLIVLTVFLVVLPLLLPPLPPPPLVLLFIPVLIMAVLILLAFSHLSQVPNMA 89

BLAST of Clc10G15610 vs. ExPASy TrEMBL
Match: A0A5B7AL58 (Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 9.0e-05
Identity = 32/60 (53.33%), Postives = 50/60 (83.33%), Query Frame = 0

Query: 36  KIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIPNI 95
           +   L +V++++V T SLL+LP+V+PPLPPPPL +L +P+L++AVL+LLAFS S ++PN+
Sbjct: 92  RFFSLRAVVIMVVLTVSLLVLPVVLPPLPPPPLMLLFIPILIMAVLILLAFSPS-QLPNV 150

BLAST of Clc10G15610 vs. ExPASy TrEMBL
Match: M5VSM6 (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014424mg PE=4 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.5e-04
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 0

Query: 36  KIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRRIPNI 95
           K   + SVM+L + T  L++LPLV+PPLPPPPL +L +PVL++AVL+L+AFS   R+P  
Sbjct: 3   KYFSIISVMILTILTVFLVVLPLVLPPLPPPPLVLLFVPVLIMAVLVLVAFSPLPRVPGQ 62

Query: 96  AAEV 100
            A V
Sbjct: 63  MAVV 66

BLAST of Clc10G15610 vs. ExPASy TrEMBL
Match: A0A2R6RY82 (Biotin synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc03950 PE=3 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.0e-04
Identity = 42/87 (48.28%), Postives = 57/87 (65.52%), Query Frame = 0

Query: 10 LLFNVSTLVVSLQERGFFGNIRLNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLA 69
          L F+ +    SL  R      RL C K   L S +V++V T SLL+LPLV+PPLPPPP+ 
Sbjct: 18 LYFDTTKAFSSLSAR------RLMC-KYFSLRSALVMVVLTVSLLVLPLVLPPLPPPPVE 77

Query: 70 VLSLPVLLLAVLLLLAFSSSRRIPNIA 97
          +  +P+L++AVL+LLA S S  IPN+A
Sbjct: 78 LFLVPILIMAVLILLACSPS-NIPNVA 96

BLAST of Clc10G15610 vs. ExPASy TrEMBL
Match: A0A1S3Z0B8 (ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107781668 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.4e-04
Identity = 34/69 (49.28%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 33  NCKKIIRLS-----SVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFS 92
           N KK++ +S     S ++LL  TASLLLLPL++PPLPPPP  +L LP+L+L +L+ LAF 
Sbjct: 61  NGKKVLSISYFSLESFLLLLCLTASLLLLPLILPPLPPPPFMLLLLPILILLLLMFLAFM 120

Query: 93  SSRRIPNIA 97
            S  + N++
Sbjct: 121 PSSNLRNVS 129

BLAST of Clc10G15610 vs. TAIR 10
Match: AT2G44080.1 (ARGOS-like )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 28/67 (41.79%), Postives = 46/67 (68.66%), Query Frame = 0

Query: 31  RLNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSR 90
           RL       L S++VL+  TASLL+LPL++PPLPPPP  +L +P+ ++ +L++LAF  S 
Sbjct: 64  RLISASYFSLESMVVLVGLTASLLILPLILPPLPPPPFMLLLIPIGIMVLLMVLAFMPSS 123

Query: 91  RIPNIAA 98
              ++++
Sbjct: 124 NSKHVSS 130

BLAST of Clc10G15610 vs. TAIR 10
Match: AT2G41230.1 (unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 75; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.8 bits (107), Expect = 2.3e-05
Identity = 32/67 (47.76%), Postives = 44/67 (65.67%), Query Frame = 0

Query: 32 LNCKKIIRLSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSSRR 91
          LN   +I   SV +LL  +  LL+LP  +PPLPPPP  +L LP+LL+ +L+ LAFS S  
Sbjct: 19 LNGSSLITARSVALLLFLSLLLLILPPFLPPLPPPPATLLLLPLLLMILLIFLAFSPSNE 78

Query: 92 IPNIAAE 99
           P++A E
Sbjct: 79 -PSLAVE 84

BLAST of Clc10G15610 vs. TAIR 10
Match: AT3G59900.1 (auxin-regulated gene involved in organ size )

HSP 1 Score: 42.7 bits (99), Expect = 2.0e-04
Identity = 26/50 (52.00%), Postives = 39/50 (78.00%), Query Frame = 0

Query: 40  LSSVMVLLVWTASLLLLPLVVPPLPPPPLAVLSLPVLLLAVLLLLAFSSS 90
           L S+ +L+  TASLL+LPLV+PPLPPPP  +L +P+ ++ +L++LAF  S
Sbjct: 67  LESLFLLVGLTASLLILPLVLPPLPPPPFMLLLVPIGIMVLLVVLAFMPS 116

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TQE05894.14.9e-0560.00hypothetical protein C1H46_008577 [Malus baccata][more]
XP_022849189.11.1e-0452.05protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea var. sylvestr... [more]
QHO44850.12.4e-0456.25uncharacterized protein DS421_6g174230 [Arachis hypogaea][more]
QHN84568.12.4e-0454.69uncharacterized protein DS421_16g529750 [Arachis hypogaea][more]
CAA3019299.14.2e-0458.18AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE [Olea europaea subsp. europaea][more]
Match NameE-valueIdentityDescription
C7SFP62.5e-0447.62Protein AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE OS=Brassica rapa subsp. peki... [more]
Q8RXL73.3e-0441.79ARGOS-like protein OS=Arabidopsis thaliana OX=3702 GN=ARL PE=2 SV=1[more]
Q8RWS13.3e-0447.76Protein ORGAN SIZE RELATED 1 OS=Arabidopsis thaliana OX=3702 GN=ORS1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A540N4D32.4e-0560.00Uncharacterized protein OS=Malus baccata OX=106549 GN=C1H46_008577 PE=4 SV=1[more]
A0A5B7AL589.0e-0553.33Uncharacterized protein (Fragment) OS=Davidia involucrata OX=16924 GN=Din_026276... [more]
M5VSM61.5e-0453.13Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_ppa014424mg PE=4 SV=1[more]
A0A2R6RY822.0e-0448.28Biotin synthase OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc039... [more]
A0A1S3Z0B83.4e-0449.28ARGOS-like protein OS=Nicotiana tabacum OX=4097 GN=LOC107781668 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT2G44080.12.3e-0541.79ARGOS-like [more]
AT2G41230.12.3e-0547.76unknown protein; Has 75 Blast hits to 75 proteins in 8 species: Archae - 0; Bact... [more]
AT3G59900.12.0e-0452.00auxin-regulated gene involved in organ size [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38928ARGOS7coord: 35..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G15610.2Clc10G15610.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane