Clc10G15550 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G15550
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 29234557 .. 29235100 (+)
RNA-Seq ExpressionClc10G15550
SyntenyClc10G15550
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCTCTCTCTTTTACGTATACAGTACTGAATCCAGCAGCCATGGCGGGAATGCAATACAACTTCTTCCCTACAGACTTCTACTACCCTCGTCCACCGCTGCCGTCGCCGCCTAATTCCGTTCAAATCTCCGCTGAGCCTCTGCCATCTACGGTTGTTCCTCCGCCGAGAAAAACAGTTGAAGATGATCGAGAAGCCGATTGGTCACTCGATAAACCGAAAGCATCGCCGTCATTATTGTCGTCGTCCATGGCCATCGACACGAAGGTGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAACAATGAAACTCTCACCATTTTTTTCCTTTTCCCTTAGATTTGAATAAAGTATTGTCATATTGGAGATTTGCTTTTCATTTGTACTGAGTGAATTATATATAAACATAAGTTTCCAAATGAAAGTCATACGTGACATAAATTTCTTACGGCAGTTTGTTAATTATTTATTTATTTTTTTTTAATTTTTATTGGGTCTATAATTCTATGAGCAATATTTAGA

mRNA sequence

ATCTCTCTCTCTTTTACGTATACAGTACTGAATCCAGCAGCCATGGCGGGAATGCAATACAACTTCTTCCCTACAGACTTCTACTACCCTCGTCCACCGCTGCCGTCGCCGCCTAATTCCGTTCAAATCTCCGCTGAGCCTCTGCCATCTACGGTTGTTCCTCCGCCGAGAAAAACAGTTGAAGATGATCGAGAAGCCGATTGGTCACTCGATAAACCGAAAGCATCGCCGTCATTATTGTCGTCGTCCATGGCCATCGACACGAAGGTGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAACAATGAAACTCTCACCATTTTTTTCCTTTTCCCTTAGATTTGAATAAAGTATTGTCATATTGGAGATTTGCTTTTCATTTGTACTGAGTGAATTATATATAAACATAAGTTTCCAAATGAAAGTCATACGTGACATAAATTTCTTACGGCAGTTTGTTAATTATTTATTTATTTTTTTTTAATTTTTATTGGGTCTATAATTCTATGAGCAATATTTAGA

Coding sequence (CDS)

ATGGCGGGAATGCAATACAACTTCTTCCCTACAGACTTCTACTACCCTCGTCCACCGCTGCCGTCGCCGCCTAATTCCGTTCAAATCTCCGCTGAGCCTCTGCCATCTACGGTTGTTCCTCCGCCGAGAAAAACAGTTGAAGATGATCGAGAAGCCGATTGGTCACTCGATAAACCGAAAGCATCGCCGTCATTATTGTCGTCGTCCATGGCCATCGACACGAAGGTGGTTGGAGCTTCAACTTCCATGGCGTTTCTTCCTCCTCCCTCTTATATCCTCAAACAATGA

Protein sequence

MAGMQYNFFPTDFYYPRPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKVVGASTSMAFLPPPSYILKQ
Homology
BLAST of Clc10G15550 vs. NCBI nr
Match: WP_217833416.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 153.7 bits (387), Expect = 8.1e-34
Identity = 79/79 (100.00%), Postives = 79/79 (100.00%), Query Frame = 0

Query: 17 RPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKV 76
          RPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKV
Sbjct: 1  RPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPKASPSLLSSSMAIDTKV 60

Query: 77 VGASTSMAFLPPPSYILKQ 96
          VGASTSMAFLPPPSYILKQ
Sbjct: 61 VGASTSMAFLPPPSYILKQ 79

BLAST of Clc10G15550 vs. NCBI nr
Match: KAG6580888.1 (hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 94.7 bits (234), Expect = 4.4e-16
Identity = 57/96 (59.38%), Postives = 69/96 (71.88%), Query Frame = 0

Query: 1  MAGMQYNFFPTDFYYPR--PPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDK 60
          MAGMQYNFFPTDFYYPR  PP P PPNSV++           P R+TVED++  + S+D+
Sbjct: 1  MAGMQYNFFPTDFYYPRPPPPPPPPPNSVKM-------LTTLPLRRTVEDEK-GEQSVDE 60

Query: 61 PKASPSLLSSSMAIDTKVVGASTSMAFLPPPSYILK 95
          PKASP    +SMA++  VVGAS S AFLPPPS+ILK
Sbjct: 61 PKASP----ASMAMNKTVVGASISTAFLPPPSHILK 84

BLAST of Clc10G15550 vs. NCBI nr
Match: KAA0053873.1 (hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK25531.1 hypothetical protein E5676_scaffold352G006830 [Cucumis melo var. makuwa])

HSP 1 Score: 88.6 bits (218), Expect = 3.2e-14
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MAGMQYNFFPTDFYYPRPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPK 60
          MAGM  NFFPTDFYYPR    + P+  QI+A+PL         KTVEDDRE +      +
Sbjct: 1  MAGMPCNFFPTDFYYPR---SAQPHFAQIAAKPL--------SKTVEDDREVE------R 60

Query: 61 ASPSLLSSSMAIDTKVVGASTSMAFLPPPSYILKQ 96
             +L  SS+AI+ K+VGASTSMAFLPPPSYILKQ
Sbjct: 61 LEKALSLSSVAIEKKMVGASTSMAFLPPPSYILKQ 78

BLAST of Clc10G15550 vs. ExPASy TrEMBL
Match: A0A5A7UD60 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006830 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 1.5e-14
Identity = 54/95 (56.84%), Postives = 64/95 (67.37%), Query Frame = 0

Query: 1  MAGMQYNFFPTDFYYPRPPLPSPPNSVQISAEPLPSTVVPPPRKTVEDDREADWSLDKPK 60
          MAGM  NFFPTDFYYPR    + P+  QI+A+PL         KTVEDDRE +      +
Sbjct: 1  MAGMPCNFFPTDFYYPR---SAQPHFAQIAAKPL--------SKTVEDDREVE------R 60

Query: 61 ASPSLLSSSMAIDTKVVGASTSMAFLPPPSYILKQ 96
             +L  SS+AI+ K+VGASTSMAFLPPPSYILKQ
Sbjct: 61 LEKALSLSSVAIEKKMVGASTSMAFLPPPSYILKQ 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
WP_217833416.18.1e-34100.00hypothetical protein, partial [Synechococcus sp. PCC 7002][more]
KAG6580888.14.4e-1659.38hypothetical protein SDJN03_20890, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAA0053873.13.2e-1456.84hypothetical protein E6C27_scaffold135G002660 [Cucumis melo var. makuwa] >TYK255... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UD601.5e-1456.84Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 43..57
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G15550.1Clc10G15550.1mRNA