Clc10G15460 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G15460
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	DNA-directed RNA polymerase V subunit 5A
Location	ClcChr10: 29148384 .. 29154759 (-)
RNA-Seq Expression	Clc10G15460
Synteny	Clc10G15460

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGCATAATTAAAAATTTGAAACGAATCCTATAGTTTAGGGTTTTTTATTTTTTTTTGGGTTAATTTAACCATGAATTTTTTGAACTATTTCCCATTTCTAAAGCAAGAAAAAGGAAGCGCTACGCTCTATTCGCGGAGGAAGGGAGCGCAAATGGAGGAAGATGGGTTTGAGGGAGAGCCGAATCAAGTGGAGTTTGGCACTTGCTTGAGTAGCTACATCGACAATGGCACCACTGAGAGCCACAGATACTTTCTTTCTCGCAGAACAGTCTTGGAGATGCTCAGGGACCGAGGTTACACTCTCAACTCCCCTGATATCGACCTCTCTCTTCAACAATTCCGAGAAATTTACGGCCAATCCCCCGACGTTGATCGCCTTAAAATATCCGCCGTTCATCGCTCCGATCCCTCCAAAAGGGTACGACTCGACCGCTTCTTGCATTGTTAATTCCTTCGTGTGTCTTGTTTGTCTTAGTCAAATTAGGGTGGACAATGTCAGTACAGAAAGAGTGTTGATTCATTCTGCAGATTTCTTTTAGATTTTGTTCCGAGGATAATGGTGCATGTTTTCTTTTTCTAGTATCGTTGAAATGAACTGGACCAAGGTGCTACTAGATTACCCTTCTCTACTAGTTACGATTTATGGTGACTTACAGAAATGGTGTTTGTGAATTGTCATCATGTAGTAAAGTTTCCTTGGGAGGAACTGCTGAGAGAAATACTTTTCTAAGCAAGGACGAAACATTGAAATTATTGAAAATTATTAGAAAAACAGGCTGACAATATAAATATATATATTAGCGCTGGCCTAGTGGTAAATAAAGGGTATCGGTTTTATAAGGGGCTTAGAGTATTTAATGTCTCAAATGTTGTAGGATCAAACGAGTTATCTGTGAGATTAATCGAGGTGTGCATAAGCTGATCTGGACACTCACGGTTATAAAAAGAAAATAGATTTAATCATGATACTTTATTATAGTTACGTAAGACTGTAGGTAGTCTTACATCTTTATGTGTTATTTCAAAACTGATGGTTGATTTTGCAGGTCCTCGTAATTTTCTGTGGGACTGGTGCAGTAAAGGTTAATGCTATCCGCAATATTGCTGGCCAAATTGCTAACAAGGACAGTTTGCACGGTCTCATTCTGATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTCAAGGTTGAAATATTCCAGGTTTGTTTCTTGAAGCTGTGTATGCATTTTTTTAAGTTGACAGACACAGAGTAGCATCCTGGTAAATGGTTTCAACGAGTCATTTATTTGTTTTCATGCTGTGTTCTTAGTTTCTTCATTCTCAGTCTTTGGTGTATTCTTCACAATGGACACTGCTGAAGTTGTTATCTGAGTATTATAACAGCAGAAGCTGGTTAAATTAAATATCAACTGCATCATTAATCACATTCCAAGAAGTTGGCATTGACGTGGGGAGCGCTGGTGAGGGAATACGAGTTGCCATGATAGAAAAGAGAAATAACTTAAAGAACTAGAGGTCTCAGGTAATAAGACAAAAGAGTGACCCAGACAAGAACGGAATACAGAAGTAGGGGAAGGGTTCCAAACCCTTTCGTTTCTTTTTCTTTTTTGTTTTTCCTGAACAAGGGTGATGAGAAGCTTATCACATTATAAAATCTCTTCCATGATTTATTAGTAAGAAAATATTATCATCGTTAAAGAGAAAGAAGCCTTTAGTCATTACTTCATGTGGACTATGAATGTAAAAATATAGTCATTTCTGTTATGGATTCCACATTGGAAAGATAAGGAGACCTCACAATCTTTAAAAGATACATGAGCTACTCCCCCTATTGTCAATCGGTTTTGAGATGGAACCCATGTTTCTCTGATATGGTATCAAAGTCTATGAAGTCCAAACAGGTATTTGATCAAGATCCAACCCAAGAATGGTGAATTCAAAGAGGCACATCTTGAGAGGGCATGTTGAATATCCCACATTTTAAAGATAGGGAGACCTCATAATTTTTAAAGATATTGTCATTTTTGTTGAGGATCCCACATTCAAAATATAGGGAGAGGTCACAATTTTTAAAAGATATACGAGCTAGAGCTAGTCCTCCCATTGCCAATCGGTAATGAGATGAAACCCATGTTTCTCTAATAGCTTTGTAATTCTAGCAATCCTTAAACAAGGTCAAGAACACTAGAGATTAAGTTGATTTTCTTACATGCATAGAACTATAGAGAAGTTCGGCCATTTCTTTAATGTGTTGCCATGGGGACGAAACAAGGGAGAAACGACAATAGATGTGAAATATGTCAAATTTCTTTGCTTCTTGTTGTACTTCAAACCTGTATTACGTAATGAAAATTGGATTTTGGAATCAATACTATAGTTATTATGCTAGTGGAAAAAATTGTTTAGAATCAAAATTAAGTTGAAGGATCATCGATCATCTTAAAAAGTTCTCCCTTTAGGGTGCTCTTGAATTCTCCACTTAGGTATGAGGGTAAAGTTTTGTGGCAGAGTAGGTTTTTTGCTACCTTGTGGGGCATTTGGAGTTAGTGGAATAATAGAATGCTTAGAAGGGTTGAGAGCTCGAGCAAGAATGTTTGGAAGGGGGCCAGGTTCATCACCTCCATATGGGCTTTGGTTATTGAACCCTTTTGTAACTTATTTTTTTGAGGCTAACCCTTTTGTAATTATGAGCAGTATTGTTCTTTTGAATTGAAATCCATTTCTACAGCTAGTGTCGGCCCTTTCCTTGTATTTTGATGGGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTTAATTTAATTTAATTTTTTATAAAATTTATTTATTTATTTATTTTTATTTTTTTAATTTATATATATATGCTTTCATCAGTTTCTTTAGAAAAGAAAAAAAAGAGAATCTTAATATGTTAAAATATATATTGCTCATTTTTTGTTTCTTTTTTCTTTTCTTTATAATTTTATGGGCAAAATACACTTTTGGTCTCTGAGGTTTGAGTTAGGTGTCTATTTGGTCCTTGGGGTTTTAAGAAGTTTGAAAATTTGTTTTAAATGGTCCTTAAGGTTATTTGACCATTAGTTGATTAATAGAAAGATGATGTGGCATGGTTGAAGTGACACCTTTTAAGTGATATAACAATTTTTTAAAATAATTTTATATTAATTTAGCGTGTCATTTTTTTAAAATTTTTTTATAACATCAACATACTCCATGTCCAATTGCTTCAGTGAAGCCTCGGTGCCTTCAACAATGTGCTTTCTGGAAAGCCCCTTACCGATCTGACCAGGACCGCCCCAAAAGATCTTGGTGGAGACAACTATATTGGAGCACTTCCATCCGAGGTCTTGAATGGCTGACCCATGATCTCCTTGTCCTGACCATTGGCGTAAAACATTGTCGAAGATTGATGCCATGGTCACGGCAGCATTGTAGAAAAGATTTGGCCTCTCGCACAGATTGCTGAAGCTTACCCAGCCACGTATGATAAATGGTTGACCTTCAAGCCGGACCTACAAAGTTTTTGTTTTGCATCGTGGACAAAAATGGAGGACAATCTGCGAAATTTAAAAGAAAGTGGACGAAAAAAGAGAGTGAGGTAAGATTTGGGAAAAGGGAAACAAAATAGAATTGGATCGTACTTTAGAGGTTTGAGGATTTTCTTCAACAGCAAAATGGAATGGGTTTGTGATTGTCCATGGTGAAGAATATAAAAATGAGGGCGGCATAAGATGAGGGGGAAGGGGAGAGGAAGAGAAAAATAAAATATAATGAAAAAAACTGACACATAAACCTAACCTACTATAAAATTAATAAAAATTGCTACATCACTTAAAATGTGCCTCTTCAATCATGCCACATCATCTTTCTGTTAGTCAATTAACGGTCAAATAACCTCAGAGACCATTTAAAATACCTTTTCAAACCTCAAGGATCAAAAGTGCCAATTTTAAAACCTCGGGGATCAAATGTCTACCTAACTCAAACTTCAGGGGCCAAAAGTGTATTTTGCTCTAATTTTATCTTCTGATTTATCAAATTTTGAGACATTGTTCTATATTTCCTTGTATGACTTTTATTCACTGTTATTTTTGTCTGTTACCAGATTACTGACTTACTCGTCAATATCACAAAGCATGCGTTAAAGCCAAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGGTAAGATATGGAAAAGTACCATAAACAATATTTTGTCAGTTTATTTTTCAATATTATAATCATGCATTCGTGATTACTTAATTGTGAATTTTATTTCCTTCCGCATGATTGCCTGTAGATTAAACTCTCTTATGTTAAAGTTAAACATGCTTTCCTCGAATGACCAACATTTTCTTTTGAATATTTATGCTAATCGCTGATAAGAGTCATGTCAACTAACATCTTCCAATATTTTCAGTGTACTACAATTGGGACTTTGTGTGAACAAATGGCATATAGTGCTCATTTTAGACTATATTTTGTGTTGGCAAAATTCATCCAAAGTGTGACACCGTATAGACTTATTTTGTCCTTCAAATCATTAAGTTCTATTAGGGGACGTTTGGACGGCTGGCTTGGCACCTTAAGCTTGGGTGCAATAACCAGGAAGTTCGGGTCTAGAAAAATTGTGTACGAGAGGATTCAGGAAATTTTGATTTAGGAAGACTGTATATTAGGCGCAGGTTCATCTTACCAAAAAAAAAAAAAAAAAAAGGAAAAAAAAAAAAATATATATATATATATATAAGGTGCAGGTTTAGGAAAACTATGTGGGCGGCATAAATAATGTTCCAAGCTGGTTGATGGGTCCAATTAAACCGAAGCTTAGGAACTTCTTTGGGTTAGAAAGAGAAACCCACCCTAAGGCCCAACCTAGGGTTTTGTATCTTAAATCTATGGGTTTAGGCAAAGGGTTTAAGAAGCTTGAATATATAAAATCTGTCTGCAGTGCAAGTAGAAAGCTTAGGTTTAGGAACACTGTGGGAGGTTGAATAGTGAGTTACTGTTCAAGCCTATTGGTTTTTCCAATTAAACCTGGGTTTGGCAGCTTCTCTCCAAATGTGGTGTGGTTTCTAGCCAAACATACGCACCAAACACCCCATTGTTTAGTGCTACGGAATGAATGATTGGGAAGTCGTAAAGATACGGGTTTTAAGGGTTCAAGTGACTCAGCCTATCCCATCAAAGAAAGAAAAAGTGACCCATTCCATGATACCTTGCTTTAGATAAAAACTATAATTAATAATTTTTGTGCTTGGTAGAAGGAATATATTGATTTTTTACGTTTTACTTTTTATAAAAAAAATCTAATTTTCATGGAGAAAAAAATGAACAAAGGAATAAATTGAACTTTAAAGAGCTCTTTCCTTCAGCATTTACGACTTGAGTAACAGGAGTTACTCCTTTAAAGCACAAAAACAGTTGCATATCTCTATTACATTACATTAACTTAGCCTTTTGTATGAATTTGTTCATATGACATCACAGGAAGGAGCCAAATATATATTTTTTTAAATCGTTGAAGGTTACAGTCTTCCTGTTTGGAAAATAGGAATTGTGAAAACTATAATGCCGGTATACAAATGAACCAAAGTAATATAACCATATCTGCTATGTGCAATTGCTTCTTGAATTCTCATGGACTCTGTTTCTTAAACTAGTAACCGACAGTTGCTTCAAGTCTTTATGCCTCCTTTTTATATAATGCAGCTTCCTCGATTGTTACGTACTGATGCTATTGCTCGATACTATGGACTTGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGTCACATGTAACTTATCGCTGTGTTTGGTGATGTCCTATGAATGCAGGTTTCGCCGCTTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAACTTGATTAGTTTTGTCTTGAACATCTATGTTCCAGAACTTCTTGTATTTACTAGGTTTCCAGCGCAGAATTTTATGATTACGGGCTTGTGCAAGAAATCTGTATCCACAATTACTGCAGAAGTGTACAAGGTACTCGTAACTCCCTCCCTCCACTGTTCCTGAATATTTTGAAATATGCAAGTTGTGTATGAAAGAAAAGAACTGAAGCTAGTTGTAGGAGATGTATTTATATCCTTTTCATTCCTTCATGTGTGAGAGACAAAACAAATTCCTAACCTTCACTCCTAACTTGTGAAAGAACAGATTTGGGTTTAGATTATGGCCAGTTGGATTATGATAGTTTTTACCAATTTTTGTTTTGGATGGCAAGAGAGAATGCTCGGAAAAGAGGAGAAAC

mRNA sequence

GGCATAATTAAAAATTTGAAACGAATCCTATAGTTTAGGGTTTTTTATTTTTTTTTGGGTTAATTTAACCATGAATTTTTTGAACTATTTCCCATTTCTAAAGCAAGAAAAAGGAAGCGCTACGCTCTATTCGCGGAGGAAGGGAGCGCAAATGGAGGAAGATGGGTTTGAGGGAGAGCCGAATCAAGTGGAGTTTGGCACTTGCTTGAGTAGCTACATCGACAATGGCACCACTGAGAGCCACAGATACTTTCTTTCTCGCAGAACAGTCTTGGAGATGCTCAGGGACCGAGGTTACACTCTCAACTCCCCTGATATCGACCTCTCTCTTCAACAATTCCGAGAAATTTACGGCCAATCCCCCGACGTTGATCGCCTTAAAATATCCGCCGTTCATCGCTCCGATCCCTCCAAAAGGGTCCTCGTAATTTTCTGTGGGACTGGTGCAGTAAAGGTTAATGCTATCCGCAATATTGCTGGCCAAATTGCTAACAAGGACAGTTTGCACGGTCTCATTCTGATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTCAAGGTTGAAATATTCCAGATTACTGACTTACTCGTCAATATCACAAAGCATGCGTTAAAGCCAAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGATTGTTACGTACTGATGCTATTGCTCGATACTATGGACTTGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGTCACATGTAACTTATCGCTGTGTTTGGTGATGTCCTATGAATGCAGGTTTCGCCGCTTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGAACTTGATTAGTTTTGTCTTGAACATCTATGTTCCAGAACTTCTTGTATTTACTAGGTTTCCAGCGCAGAATTTTATGATTACGGGCTTGTGCAAGAAATCTGTATCCACAATTACTGCAGAAGTGTACAAGGTACTCGTAACTCCCTCCCTCCACTGTTCCTGAATATTTTGAAATATGCAAGTTGTGTATGAAAGAAAAGAACTGAAGCTAGTTGTAGGAGATGTATTTATATCCTTTTCATTCCTTCATGTGTGAGAGACAAAACAAATTCCTAACCTTCACTCCTAACTTGTGAAAGAACAGATTTGGGTTTAGATTATGGCCAGTTGGATTATGATAGTTTTTACCAATTTTTGTTTTGGATGGCAAGAGAGAATGCTCGGAAAAGAGGAGAAAC

Coding sequence (CDS)

ATGAATTTTTTGAACTATTTCCCATTTCTAAAGCAAGAAAAAGGAAGCGCTACGCTCTATTCGCGGAGGAAGGGAGCGCAAATGGAGGAAGATGGGTTTGAGGGAGAGCCGAATCAAGTGGAGTTTGGCACTTGCTTGAGTAGCTACATCGACAATGGCACCACTGAGAGCCACAGATACTTTCTTTCTCGCAGAACAGTCTTGGAGATGCTCAGGGACCGAGGTTACACTCTCAACTCCCCTGATATCGACCTCTCTCTTCAACAATTCCGAGAAATTTACGGCCAATCCCCCGACGTTGATCGCCTTAAAATATCCGCCGTTCATCGCTCCGATCCCTCCAAAAGGGTCCTCGTAATTTTCTGTGGGACTGGTGCAGTAAAGGTTAATGCTATCCGCAATATTGCTGGCCAAATTGCTAACAAGGACAGTTTGCACGGTCTCATTCTGATTGTGCAAAATCAAATTACAAACCAAGCCATGAAAGCAGTTGAGCTTTTCTCGTTCAAGGTTGAAATATTCCAGATTACTGACTTACTCGTCAATATCACAAAGCATGCGTTAAAGCCAAACCATCAAGTACTAACGGAGGAAGAAAAACAAAAGCTTTTGAAACAATACAGTATAGAGGAAAAACAGCTTCCTCGATTGTTACGTACTGATGCTATTGCTCGATACTATGGACTTGAGAAAGGGCAGGTTGTGAAAGTGACTTACGATGGCGATATGACTAGGTCACATGTAACTTATCGCTGTGTTTGGTGA

Protein sequence

MNFLNYFPFLKQEKGSATLYSRRKGAQMEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW

Homology

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BLAST of Clc10G15460 vs. NCBI nr
Match: XP_038903402.1 (DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA-directed RNA polymerase V subunit 5A [Benincasa hispida])

HSP 1 Score: 438.0 bits (1125), Expect = 5.7e-119
Identity = 219/227 (96.48%), Postives = 225/227 (99.12%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFEGEPN+VEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNS DIDLSL
Sbjct: 1   MEEDGFEGEPNEVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSSDIDLSL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQSPDVDRLK+SAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVL+EEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLSEEEKQKLLQQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LR DA+ARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRMDAVARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 227

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BLAST of Clc10G15460 vs. NCBI nr
Match: XP_004136650.1 (DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] >KGN59468.1 hypothetical protein Csa_000810 [Cucumis sativus])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 209/227 (92.07%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFRE +GQ PDVDRLK+SA H SDPSKRVLV+FCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

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BLAST of Clc10G15460 vs. NCBI nr
Match: XP_008443287.1 (PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo])

HSP 1 Score: 423.7 bits (1088), Expect = 1.1e-114
Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFR+I+GQ PDVDRLK+ A H SDPSKRVLV+FCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

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BLAST of Clc10G15460 vs. NCBI nr
Match: XP_022158561.1 (DNA-directed RNA polymerase V subunit 5A [Momordica charantia])

HSP 1 Score: 420.6 bits (1080), Expect = 9.5e-114
Identity = 209/227 (92.07%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFEGEPN+VE GTCLSSYIDNG+TESHRYFL RRTVLEMLRDRGYT  + D DL+L
Sbjct: 1   MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLCRRTVLEMLRDRGYTPTTSDADLTL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQSPDVDRLK+SAVHRSDPSKR+LVIFCGTG+VKVNAIRNIAGQI NKD+LHG
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMT SHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCVW 227

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BLAST of Clc10G15460 vs. NCBI nr
Match: XP_023539155.1 (DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo])

HSP 1 Score: 413.7 bits (1062), Expect = 1.2e-111
Identity = 204/227 (89.87%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQ PDVDRLK+SA H +DPSKR+LVIFCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHGADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQ+VKVTYDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

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BLAST of Clc10G15460 vs. ExPASy Swiss-Prot
Match: Q9M1J2 (DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE5A PE=1 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 5.1e-78
Identity = 138/210 (65.71%), Postives = 175/210 (83.33%), Query Frame = 0


Query: 45  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLK 104
           CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+LSL  FR +YG+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 105 ISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 164
           ISA+HRSD +K+V ++F GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 165 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIA 224
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 225 RYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           RYYGLEKGQVVKV Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of Clc10G15460 vs. ExPASy Swiss-Prot
Match: Q9ZVB9 (DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702 GN=NRPD5B PE=1 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 5.5e-72
Identity = 132/220 (60.00%), Postives = 175/220 (79.55%), Query Frame = 0


Query: 34  EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREI 93
           EG+  ++  G  +S      + E H+Y+L+RRT +EMLRDRGY ++  DI+LSLQQFR +
Sbjct: 2   EGKGKEIVVGHSIS----KSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRAL 61

Query: 94  YGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQ 153
           YG+ PDVD L+ISA HR D SK++ V+FCGTG VKVNA+R IA  + +++++ GLIL++Q
Sbjct: 62  YGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQ 121

Query: 154 NQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQ 213
           + ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQ
Sbjct: 122 SHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQ 181

Query: 214 LPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV 254
           LPRL   D I RYYGLE GQV+KVTY  +++ SHVTYRCV
Sbjct: 182 LPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Clc10G15460 vs. ExPASy Swiss-Prot
Match: Q9M1H8 (DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE5C PE=2 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 4.8e-52
Identity = 102/226 (45.13%), Postives = 153/226 (67.70%), Query Frame = 0


Query: 29  EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 88
           EE   E   +  + GT C+S   D G  ES R++L+R T  EMLRDRGY +N  ++ L+L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 89  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 148
            +FR ++G+ P+++RL+I    RSDP K++LV+F GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 149 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 208
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 209 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV 254
           ++E+KQLP L   D+  RYYGL+K QVVK+TY  +     VTYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Clc10G15460 vs. ExPASy Swiss-Prot
Match: O81098 (DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPB5A PE=1 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 7.5e-29
Identity = 73/200 (36.50%), Postives = 119/200 (59.50%), Query Frame = 0


Query: 56  ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSK 115
           E  R +  ++T+++MLRDRGY +   ++ ++ QQF   +G +   + L      R+D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 116 RVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 175
           ++ + F     V V  ++    ++   +++   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 176 FQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ 235
           FQ  ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 236 VVKVTYDGDMTRSHVTYRCV 254
           VVK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Clc10G15460 vs. ExPASy Swiss-Prot
Match: A8XGH1 (DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis briggsae OX=6238 GN=rpb-5 PE=3 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.3e-28
Identity = 70/205 (34.15%), Postives = 120/205 (58.54%), Query Frame = 0


Query: 56  ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDR-----LKISAVHR 115
           E++R +  R+TVL+M+ DRGY +   ++D  L+ F+E +G  P   +     L I   H 
Sbjct: 7   ETYRLWRIRKTVLQMVHDRGYLVAQEELDQPLETFKETFGDRPSEKKPARSDLTILVAHN 66

Query: 116 SDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS-- 175
            DP+ ++ V F     + +  I+ I  Q+  + ++   I++VQ  +T  A +++   +  
Sbjct: 67  DDPADQMFVFFPEDTKIGIKTIKAICQQM-QEQNISRAIIVVQTGMTPSAKQSIGDMAPK 126

Query: 176 FKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYG 235
           + +E F   +L+VNIT+H L P H V+T EEK +LL +Y +++ QLPR+ + D +ARY+G
Sbjct: 127 YMLEHFLEAELMVNITEHELVPEHVVMTAEEKAELLARYKLKDSQLPRIQQCDPVARYFG 186

Query: 236 LEKGQVVKVTYDGDMTRSHVTYRCV 254
           L +GQVVK+    +    ++TYR V
Sbjct: 187 LRRGQVVKIIRPSETAGRYITYRLV 210

[Close]

BLAST of Clc10G15460 vs. ExPASy TrEMBL
Match: A0A0A0LCG9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.4e-115
Identity = 209/227 (92.07%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSP+ID SL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPNIDFSL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFRE +GQ PDVDRLK+SA H SDPSKRVLV+FCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRETFGQFPDVDRLKLSAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMTR+H+TYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTRAHITYRCVW 227

[Close]

BLAST of Clc10G15460 vs. ExPASy TrEMBL
Match: A0A1S3B7M5 (DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906 PE=3 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 5.4e-115
Identity = 210/227 (92.51%), Postives = 220/227 (96.92%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFE EPN VEFGTCLSSYID+GTTESHRYFLSRRTV+EML+DRGYT+NSPDIDLSL
Sbjct: 1   MEEDGFEAEPNPVEFGTCLSSYIDDGTTESHRYFLSRRTVVEMLKDRGYTINSPDIDLSL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFR+I+GQ PDVDRLK+ A H SDPSKRVLV+FCGTGAVKVNAIRNIAGQIANKDSLHG
Sbjct: 61  QQFRDIFGQYPDVDRLKLYAAHHSDPSKRVLVVFCGTGAVKVNAIRNIAGQIANKDSLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMT +HVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTSAHVTYRCVW 227

[Close]

BLAST of Clc10G15460 vs. ExPASy TrEMBL
Match: A0A6J1E191 (DNA-directed RNA polymerase V subunit 5A OS=Momordica charantia OX=3673 GN=LOC111025016 PE=3 SV=1)

HSP 1 Score: 420.6 bits (1080), Expect = 4.6e-114
Identity = 209/227 (92.07%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGFEGEPN+VE GTCLSSYIDNG+TESHRYFL RRTVLEMLRDRGYT  + D DL+L
Sbjct: 1   MEEDGFEGEPNRVELGTCLSSYIDNGSTESHRYFLCRRTVLEMLRDRGYTPTTSDADLTL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQSPDVDRLK+SAVHRSDPSKR+LVIFCGTG+VKVNAIRNIAGQI NKD+LHG
Sbjct: 61  QQFREIYGQSPDVDRLKLSAVHRSDPSKRILVIFCGTGSVKVNAIRNIAGQIVNKDTLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAV+LFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY
Sbjct: 121 LILIVQNQITNQAMKAVDLFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQVVKVTYDGDMT SHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQVVKVTYDGDMTMSHVTYRCVW 227

[Close]

BLAST of Clc10G15460 vs. ExPASy TrEMBL
Match: A0A6J1I733 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111470215 PE=3 SV=1)

HSP 1 Score: 413.3 bits (1061), Expect = 7.3e-112
Identity = 204/227 (89.87%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQ PDVDRLK+SA HR+DPSKR+LVIFCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFPDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYY LEKGQ+VKVTYDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYRLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Clc10G15460 vs. ExPASy TrEMBL
Match: A0A6J1GH86 (DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111453892 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.2e-111
Identity = 204/227 (89.87%), Postives = 219/227 (96.48%), Query Frame = 0


Query: 28  MEEDGFEGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 87
           MEEDGF GEPN+VE GTCLSSYID+GTTESHRY+LSRRTVLEMLRDRGYT+N  DIDL+L
Sbjct: 1   MEEDGFLGEPNRVELGTCLSSYIDDGTTESHRYYLSRRTVLEMLRDRGYTINPSDIDLTL 60

Query: 88  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 147
           QQFREIYGQ  DVDRLK+SA HR+DPSKR+LVIFCGTGAVKV+AIRNIAGQI NK++LHG
Sbjct: 61  QQFREIYGQFLDVDRLKLSAAHRADPSKRILVIFCGTGAVKVSAIRNIAGQIVNKETLHG 120

Query: 148 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 207
           LILIVQNQITNQAMKAVE+FSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLL+QY
Sbjct: 121 LILIVQNQITNQAMKAVEVFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLEQY 180

Query: 208 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           SIEEKQLPR+LRTDAIARYYGLEKGQ+VKVTYDGDMTRSHVTYRCVW
Sbjct: 181 SIEEKQLPRMLRTDAIARYYGLEKGQIVKVTYDGDMTRSHVTYRCVW 227

[Close]

BLAST of Clc10G15460 vs. TAIR 10
Match: AT3G57080.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 292.4 bits (747), Expect = 3.6e-79
Identity = 138/210 (65.71%), Postives = 175/210 (83.33%), Query Frame = 0


Query: 45  CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLK 104
           CLS Y+D  + ESHRY+L+RR  L+MLRDRGY ++  DI+LSL  FR +YG+ PDVDRL+
Sbjct: 13  CLSKYVDLSSEESHRYYLARRNGLQMLRDRGYEVSDEDINLSLHDFRTVYGERPDVDRLR 72

Query: 105 ISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAV 164
           ISA+HRSD +K+V ++F GT  VKVNAIR++   I +++++ GLIL++QN +TNQA+KA+
Sbjct: 73  ISALHRSDSTKKVKIVFFGTSMVKVNAIRSVVADILSQETITGLILVLQNHVTNQALKAI 132

Query: 165 ELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIA 224
           ELFSFKVEIFQITDLLVNITKH+LKP HQVL +EEK  LLK++SIEEKQLPR+ + DAI 
Sbjct: 133 ELFSFKVEIFQITDLLVNITKHSLKPQHQVLNDEEKTTLLKKFSIEEKQLPRISKKDAIV 192

Query: 225 RYYGLEKGQVVKVTYDGDMTRSHVTYRCVW 255
           RYYGLEKGQVVKV Y G++T SHV +RCVW
Sbjct: 193 RYYGLEKGQVVKVNYRGELTESHVAFRCVW 222

[Close]

BLAST of Clc10G15460 vs. TAIR 10
Match: AT2G41340.1 (RNA polymerase II fifth largest subunit, D )

HSP 1 Score: 272.3 bits (695), Expect = 3.9e-73
Identity = 132/220 (60.00%), Postives = 175/220 (79.55%), Query Frame = 0


Query: 34  EGEPNQVEFGTCLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREI 93
           EG+  ++  G  +S      + E H+Y+L+RRT +EMLRDRGY ++  DI+LSLQQFR +
Sbjct: 2   EGKGKEIVVGHSIS----KSSVECHKYYLARRTTMEMLRDRGYDVSDEDINLSLQQFRAL 61

Query: 94  YGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQ 153
           YG+ PDVD L+ISA HR D SK++ V+FCGTG VKVNA+R IA  + +++++ GLIL++Q
Sbjct: 62  YGEHPDVDLLRISAKHRFDSSKKISVVFCGTGIVKVNAMRVIAADVLSRENITGLILVLQ 121

Query: 154 NQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQ 213
           + ITNQA+KAVELFSFKVE+F+ITDLLVN++KH L+P HQVL ++EK+ LLK++SIEEKQ
Sbjct: 122 SHITNQALKAVELFSFKVELFEITDLLVNVSKHVLRPKHQVLNDKEKESLLKKFSIEEKQ 181

Query: 214 LPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV 254
           LPRL   D I RYYGLE GQV+KVTY  +++ SHVTYRCV
Sbjct: 182 LPRLSSKDPIVRYYGLETGQVMKVTYKDELSESHVTYRCV 217

[Close]

BLAST of Clc10G15460 vs. TAIR 10
Match: AT3G54490.1 (RNA polymerase II fifth largest subunit, E )

HSP 1 Score: 206.1 bits (523), Expect = 3.4e-53
Identity = 102/226 (45.13%), Postives = 153/226 (67.70%), Query Frame = 0


Query: 29  EEDGFEGEPNQVEFGT-CLSSYIDNGTTESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSL 88
           EE   E   +  + GT C+S   D G  ES R++L+R T  EMLRDRGY +N  ++ L+L
Sbjct: 7   EEGCCENVESTFDDGTNCISKTEDTGGIESKRFYLARTTAFEMLRDRGYEVNEAELSLTL 66

Query: 89  QQFREIYGQSPDVDRLKISAVHRSDPSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHG 148
            +FR ++G+ P+++RL+I    RSDP K++LV+F GT  + V ++R +  QI+N   LH 
Sbjct: 67  SEFRSVFGEKPELERLRICVPLRSDPKKKILVVFMGTEPITVKSVRALHIQISNNVGLHA 126

Query: 149 LILIVQNQITNQAMKAVELFSFKVEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQY 208
           +IL++Q+++ + A KA+  F F VE F I DLLVNITKH  +P  ++L +EEK++LL+++
Sbjct: 127 MILVLQSKMNHFAQKALTTFPFTVETFPIEDLLVNITKHIQQPKIEILNKEEKEQLLRKH 186

Query: 209 SIEEKQLPRLLRTDAIARYYGLEKGQVVKVTYDGDMTRSHVTYRCV 254
           ++E+KQLP L   D+  RYYGL+K QVVK+TY  +     VTYRC+
Sbjct: 187 ALEDKQLPYLQEKDSFVRYYGLKKKQVVKITYSKEPVGDFVTYRCI 232

[Close]

BLAST of Clc10G15460 vs. TAIR 10
Match: AT3G22320.1 (Eukaryotic rpb5 RNA polymerase subunit family protein )

HSP 1 Score: 129.0 bits (323), Expect = 5.3e-30
Identity = 73/200 (36.50%), Postives = 119/200 (59.50%), Query Frame = 0


Query: 56  ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQSPDVDRLKISAVHRSDPSK 115
           E  R +  ++T+++MLRDRGY +   ++ ++ QQF   +G +   + L      R+D S 
Sbjct: 6   ELKRLYRIQKTLMQMLRDRGYFIADSELTMTKQQFIRKHGDNMKREDLVTLKAKRNDNSD 65

Query: 116 RVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FKVEI 175
           ++ + F     V V  ++    ++   +++   IL+VQ  +T  A   +   S  F +E+
Sbjct: 66  QLYIFFPDEAKVGVKTMKMYTNRM-KSENVFRAILVVQQNLTPFARTCISEISSKFHLEV 125

Query: 176 FQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLEKGQ 235
           FQ  ++LVNI +H L P HQVLT EEK+ LL++Y+++E QLPR+  TD IARY+GL++GQ
Sbjct: 126 FQEAEMLVNIKEHVLVPEHQVLTTEEKKTLLERYTVKETQLPRIQVTDPIARYFGLKRGQ 185

Query: 236 VVKVTYDGDMTRSHVTYRCV 254
           VVK+    +    +VTYR V
Sbjct: 186 VVKIIRPSETAGRYVTYRYV 204

[Close]

BLAST of Clc10G15460 vs. TAIR 10
Match: AT5G57980.1 (RNA polymerase II fifth largest subunit, C )

HSP 1 Score: 119.8 bits (299), Expect = 3.2e-27
Identity = 72/201 (35.82%), Postives = 116/201 (57.71%), Query Frame = 0


Query: 56  ESHRYFLSRRTVLEMLRDRGYTLNSPDIDLSLQQFREIYGQS---PDVDRLKISAVHRSD 115
           E  R F  RRTVL+MLRDRGYT+   D++L  ++F + + ++    + + L +SA    +
Sbjct: 7   EITRIFKVRRTVLQMLRDRGYTIEESDLNLKREEFVQRFCKTMNKVNKEALFVSANKGPN 66

Query: 116 PSKRVLVIFCGTGAVKVNAIRNIAGQIANKDSLHGLILIVQNQITNQAMKAVELFS--FK 175
           P+ ++ V +     V V  I+         D +H  I++V   IT  A  AV   +    
Sbjct: 67  PADKIYVFYPEGPKVGVPVIKKEVAIKMRDDKVHRGIVVVPMAITAPARMAVSELNKMLT 126

Query: 176 VEIFQITDLLVNITKHALKPNHQVLTEEEKQKLLKQYSIEEKQLPRLLRTDAIARYYGLE 235
           +E+F+  +L+ NIT+H L   + VL ++ K+KLL  Y++++ QLPR+L TD +ARYYGL+
Sbjct: 127 IEVFEEAELVTNITEHKLVNKYYVLDDQAKKKLLNTYTVQDTQLPRILVTDPLARYYGLK 186

Query: 236 KGQVVKVTYDGDMTRSHVTYR 252
           +GQVVK+      +  + TYR
Sbjct: 187 RGQVVKIRRSDATSLDYYTYR 207

The following BLAST results are available for this feature:

BLAST of Clc10G15460 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903402.1	5.7e-119	96.48	DNA-directed RNA polymerase V subunit 5A [Benincasa hispida] >XP_038903403.1 DNA...	[more]
XP_004136650.1	1.1e-114	92.07	DNA-directed RNA polymerase V subunit 5A [Cucumis sativus] >KGN59468.1 hypotheti...	[more]
XP_008443287.1	1.1e-114	92.51	PREDICTED: DNA-directed RNA polymerase V subunit 5A [Cucumis melo]	[more]
XP_022158561.1	9.5e-114	92.07	DNA-directed RNA polymerase V subunit 5A [Momordica charantia]	[more]
XP_023539155.1	1.2e-111	89.87	DNA-directed RNA polymerase V subunit 5A [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc10G15460 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1J2	5.1e-78	65.71	DNA-directed RNA polymerase V subunit 5A OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
Q9ZVB9	5.5e-72	60.00	DNA-directed RNA polymerases IV and V subunit 5B OS=Arabidopsis thaliana OX=3702...	[more]
Q9M1H8	4.8e-52	45.13	DNA-directed RNA polymerase V subunit 5C OS=Arabidopsis thaliana OX=3702 GN=NRPE...	[more]
O81098	7.5e-29	36.50	DNA-directed RNA polymerases II and IV subunit 5A OS=Arabidopsis thaliana OX=370...	[more]
A8XGH1	1.3e-28	34.15	DNA-directed RNA polymerases I, II, and III subunit RPABC1 OS=Caenorhabditis bri...	[more]

BLAST of Clc10G15460 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCG9	5.4e-115	92.07	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G822200 PE=3 SV=1	[more]
A0A1S3B7M5	5.4e-115	92.51	DNA-directed RNA polymerase V subunit 5A OS=Cucumis melo OX=3656 GN=LOC103486906...	[more]
A0A6J1E191	4.6e-114	92.07	DNA-directed RNA polymerase V subunit 5A OS=Momordica charantia OX=3673 GN=LOC11...	[more]
A0A6J1I733	7.3e-112	89.87	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita maxima OX=3661 ...	[more]
A0A6J1GH86	1.2e-111	89.87	DNA-directed RNA polymerase V subunit 5A isoform X2 OS=Cucurbita moschata OX=366...	[more]

BLAST of Clc10G15460 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57080.1	3.6e-79	65.71	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT2G41340.1	3.9e-73	60.00	RNA polymerase II fifth largest subunit, D	[more]
AT3G54490.1	3.4e-53	45.13	RNA polymerase II fifth largest subunit, E	[more]
AT3G22320.1	5.3e-30	36.50	Eukaryotic rpb5 RNA polymerase subunit family protein	[more]
AT5G57980.1	3.2e-27	35.82	RNA polymerase II fifth largest subunit, C	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035913	RPB5-like RNA polymerase subunit superfamily	GENE3D	3.90.940.20		coord: 179..254 e-value: 1.0E-26 score: 94.3
IPR035913	RPB5-like RNA polymerase subunit superfamily	SUPERFAMILY	55287	RPB5-like RNA polymerase subunit	coord: 179..254
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	GENE3D	3.40.1340.10		coord: 51..178 e-value: 2.4E-35 score: 123.5
IPR036710	RNA polymerase Rpb5, N-terminal domain superfamily	SUPERFAMILY	53036	Eukaryotic RPB5 N-terminal domain	coord: 55..182
IPR005571	RNA polymerase, Rpb5, N-terminal	PFAM	PF03871	RNA_pol_Rpb5_N	coord: 55..138 e-value: 2.4E-22 score: 79.3
IPR000783	RNA polymerase, subunit H/Rpb5 C-terminal	PFAM	PF01191	RNA_pol_Rpb5_C	coord: 181..253 e-value: 2.9E-29 score: 100.7
IPR039531	DNA-directed RNA polymerase subunit Rpb5-like	PANTHER	PTHR10535	DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC1	coord: 35..254
None	No IPR available	PANTHER	PTHR10535:SF2	DNA-DIRECTED RNA POLYMERASE V SUBUNIT 5A	coord: 35..254

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G15460.1	Clc10G15460.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0055029	nuclear DNA-directed RNA polymerase complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity