Clc10G14360 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G14360
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptiongibberellin-regulated protein 4-like
LocationClcChr10: 27993879 .. 27994822 (+)
RNA-Seq ExpressionClc10G14360
SyntenyClc10G14360
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtgagactctttcctccgctaccttacttctcttctttccggtccctctgtcttttttcttcacagaactgactctgtttttctctttgttgttgatccgtttctacaggtcatggccggcagtagtggtcgaaacagggtaaaactccttttctactaccaactcctctttcacccgaaatccgtgtttccaatgttggatcattttaccattgcggcattttgtcgaacacttaagatttactctgttcttgggtttgaaaatggtctttcgtactctcaaattcactcatttgcTGTAGATCAAGCTTTATCTGCGGCATTTTTTCGAACACTTTGTAGTTAGTTTACTCGTATTTTCTGACTAAGCATTGATCTGACTTTGGAGACACACAAAACTTTCCCTTTTACTCACTGCCTAACGTAAATCAGGCATTAGAAACTCAAAAATCAACAATTTGTTTATAGCGGCACCTTTGTCAAACACCTTGTTAATTGTACTCACTACTCACAATTTGGCTCTTTTTTTCAGAACCCATATGGACCAGGGAGCGTCAAATCCTTCCGTGAGTACTCTCCTAATTCTACAATGCTGCTTTGAGTTGTACTTGGATTTCTCTGCAAGGGTTTTTTTTTTTTTTTTTTTTTTAAAATAAAAATTCACAGAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA

mRNA sequence

atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtcatggccggcagtagtggtcgaaacaggAACCCATATGGACCAGGGAGCGTCAAATCCTTCCAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA

Coding sequence (CDS)

atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtcatggccggcagtagtggtcgaaacaggAACCCATATGGACCAGGGAGCGTCAAATCCTTCCAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA

Protein sequence

MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNPYGPGSVKSFQCPNRCAPRCGKNTVHTSHAVLLPKDAAGSACVCRLATMETSRLPLLQTIGRQRKEDTMPLKNPNSFCC
Homology
BLAST of Clc10G14360 vs. NCBI nr
Match: XP_038903602.1 (gibberellin-regulated protein 4 [Benincasa hispida])

HSP 1 Score: 104.0 bits (258), Expect = 8.7e-19
Identity = 55/77 (71.43%), Postives = 56/77 (72.73%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNPYGPGSVKSFQCPNRCAPRCGKNTVH 60
          MAM KFAALLLLALIA SMLQTTVMAGS GRNRNPYGPGSVKSFQCPNRCA RCG+   H
Sbjct: 1  MAMPKFAALLLLALIALSMLQTTVMAGSGGRNRNPYGPGSVKSFQCPNRCATRCGRTQYH 60

Query: 61 TSHAVLLPKDAAGSACV 78
                  K      CV
Sbjct: 61 KPCMFFCQKCCRKCLCV 77

BLAST of Clc10G14360 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 7.4e-18
Identity = 73/138 (52.90%), Postives = 80/138 (57.97%), Query Frame = 0

Query: 1   MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQ--CPNRCAPR--- 60
           MAMAKFAA+LLLALIAFSMLQTTVMAG+   GR+RNPYGPGSVK F+   PN  + +   
Sbjct: 1   MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFRKYPPNSKSKQFMS 60

Query: 61  --CGK---------------------NTVHTSHAVLLPKDAAGSACVCRLATMETSRLPL 109
             CG                      NT  T+HA    K AAGSACVC LAT ET    L
Sbjct: 61  HFCGSFGLDLSGFNAQIGAPLGAGGHNT--TNHACSSAKSAAGSACVCPLATTETKPCAL 120

BLAST of Clc10G14360 vs. NCBI nr
Match: XP_004147472.1 (gibberellin-regulated protein 4 [Cucumis sativus] >KGN59572.1 hypothetical protein Csa_002031 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 2.8e-17
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNPYGPGSVKSFQCPNRCAPRCGKNTVH 60
          MAM KFAALLLLALIA SMLQT VMAG  GRNRNPYGPGSVK+FQCPNRCA RCG+   H
Sbjct: 1  MAMPKFAALLLLALIAISMLQTAVMAGRGGRNRNPYGPGSVKAFQCPNRCATRCGRTQYH 60

Query: 61 TSHAVLLPKDAAGSACV 78
                  K      CV
Sbjct: 61 KPCMFFCQKCCRKCLCV 77

BLAST of Clc10G14360 vs. NCBI nr
Match: XP_022935665.1 (gibberellin-regulated protein 4-like [Cucurbita moschata] >XP_022983885.1 gibberellin-regulated protein 4 [Cucurbita maxima] >XP_023528273.1 gibberellin-regulated protein 4-like [Cucurbita pepo subsp. pepo] >KAG6580967.1 Gibberellin-regulated protein 4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
          MAMAKFAA+LLLALIAFSMLQTTVMAG+   GR+RNPYGPGSVK FQCPNRCA RCG+  
Sbjct: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFQCPNRCATRCGRTQ 60

Query: 61 VHTSHAVLLPKDAAGSACV 78
           H        K      CV
Sbjct: 61 YHKPCMFFCQKCCRKCLCV 79

BLAST of Clc10G14360 vs. NCBI nr
Match: XP_022933448.1 (gibberellin-regulated protein 4-like isoform X2 [Cucurbita moschata])

HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
          MAMAKFAA+L+L+LIA SM +TTVMAG+   GRNRNPYGPGSV  +QCP+RCA RCG+  
Sbjct: 3  MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNRNPYGPGSVNIYQCPSRCATRCGRTQ 62

Query: 61 VHTSHAVLLPKDAAGSACV 78
           H        K      CV
Sbjct: 63 YHKPCMFFCQKCCRKCLCV 81

BLAST of Clc10G14360 vs. ExPASy Swiss-Prot
Match: P46690 (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 8.8e-06
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0

Query: 3  MAK-FAALLLLALIAFSMLQTTVMAGSSGRN----RNPYGPGSVKSFQCPNRCAPRCGKN 62
          MAK + A+ LL LI   MLQT VMA SSG N    +  YGPGS+K  QCP+ C  RC K 
Sbjct: 1  MAKSYGAIFLLTLIVLFMLQTMVMA-SSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKT 60

Query: 63 TVHTSHAVLLPKDAAGSACV 78
            H +      K      CV
Sbjct: 61 QYHKACITFCNKCCRKCLCV 79

BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A0A0LG20 (Gip1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G826660 PE=3 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17
Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNPYGPGSVKSFQCPNRCAPRCGKNTVH 60
          MAM KFAALLLLALIA SMLQT VMAG  GRNRNPYGPGSVK+FQCPNRCA RCG+   H
Sbjct: 1  MAMPKFAALLLLALIAISMLQTAVMAGRGGRNRNPYGPGSVKAFQCPNRCATRCGRTQYH 60

Query: 61 TSHAVLLPKDAAGSACV 78
                  K      CV
Sbjct: 61 KPCMFFCQKCCRKCLCV 77

BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1J761 (gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
          MAMAKFAA+LLLALIAFSMLQTTVMAG+   GR+RNPYGPGSVK FQCPNRCA RCG+  
Sbjct: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFQCPNRCATRCGRTQ 60

Query: 61 VHTSHAVLLPKDAAGSACV 78
           H        K      CV
Sbjct: 61 YHKPCMFFCQKCCRKCLCV 79

BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1FBA5 (gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111442454 PE=3 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17
Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
          MAMAKFAA+LLLALIAFSMLQTTVMAG+   GR+RNPYGPGSVK FQCPNRCA RCG+  
Sbjct: 1  MAMAKFAAVLLLALIAFSMLQTTVMAGNGRGGRSRNPYGPGSVKIFQCPNRCATRCGRTQ 60

Query: 61 VHTSHAVLLPKDAAGSACV 78
           H        K      CV
Sbjct: 61 YHKPCMFFCQKCCRKCLCV 79

BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1F4S2 (gibberellin-regulated protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14
Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0

Query: 1  MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
          MAMAKFAA+L+L+LIA SM +TTVMAG+   GRNRNPYGPGSV  +QCP+RCA RCG+  
Sbjct: 3  MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNRNPYGPGSVNIYQCPSRCATRCGRTQ 62

Query: 61 VHTSHAVLLPKDAAGSACV 78
           H        K      CV
Sbjct: 63 YHKPCMFFCQKCCRKCLCV 81

BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11
Identity = 54/113 (47.79%), Postives = 62/113 (54.87%), Query Frame = 0

Query: 1   MAMAKFAALLLLALIAFSMLQTTVMAGS--SGRNRNPYGPGSVKSFQCPNRCAPRCGKNT 60
           MAMAKFAA+L+L+LIA SM +TTVMAG+   GRNRN                AP      
Sbjct: 3   MAMAKFAAILILSLIALSMFETTVMAGNGRGGRNRN------------AQVGAPLDAGGH 62

Query: 61  VHTSHAVLLPKDAAGSACVCRLATMETSRLPLLQTIGRQRKEDTMPLKNPNSF 112
             T+HA    K+AA SAC CR  TMET    L  T GRQRKE    L+  N F
Sbjct: 63  STTNHACSFAKNAAESACACRRVTMETKAFALATTTGRQRKEGPNALRKHNPF 103

BLAST of Clc10G14360 vs. TAIR 10
Match: AT5G15230.1 (GAST1 protein homolog 4 )

HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07
Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0

Query: 3  MAK-FAALLLLALIAFSMLQTTVMAGSSGRN----RNPYGPGSVKSFQCPNRCAPRCGKN 62
          MAK + A+ LL LI   MLQT VMA SSG N    +  YGPGS+K  QCP+ C  RC K 
Sbjct: 1  MAKSYGAIFLLTLIVLFMLQTMVMA-SSGSNVKWSQKRYGPGSLKRTQCPSECDRRCKKT 60

Query: 63 TVHTSHAVLLPKDAAGSACV 78
            H +      K      CV
Sbjct: 61 QYHKACITFCNKCCRKCLCV 79

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903602.18.7e-1971.43gibberellin-regulated protein 4 [Benincasa hispida][more]
KAG7017706.17.4e-1852.90hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma][more]
XP_004147472.12.8e-1767.53gibberellin-regulated protein 4 [Cucumis sativus] >KGN59572.1 hypothetical prote... [more]
XP_022935665.11.4e-1667.09gibberellin-regulated protein 4-like [Cucurbita moschata] >XP_022983885.1 gibber... [more]
XP_022933448.11.1e-1358.23gibberellin-regulated protein 4-like isoform X2 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
P466908.8e-0645.00Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV... [more]
Match NameE-valueIdentityDescription
A0A0A0LG201.4e-1767.53Gip1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G826660 PE=3 SV=1[more]
A0A6J1J7616.7e-1767.09gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3... [more]
A0A6J1FBA56.7e-1767.09gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114424... [more]
A0A6J1F4S25.3e-1458.23gibberellin-regulated protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN... [more]
A0A6J1EZT11.9e-1147.79uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
Match NameE-valueIdentityDescription
AT5G15230.16.3e-0745.00GAST1 protein homolog 4 [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G14360.1Clc10G14360.1mRNA