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Clc10G14360 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtgagactctttcctccgctaccttacttctcttctttccggtccctctgtcttttttcttcacagaactgactctgtttttctctttgttgttgatccgtttctacaggtcatggccggcagtagtggtcgaaacagggtaaaactccttttctactaccaactcctctttcacccgaaatccgtgtttccaatgttggatcattttaccattgcggcattttgtcgaacacttaagatttactctgttcttgggtttgaaaatggtctttcgtactctcaaattcactcatttgcTGTAGATCAAGCTTTATCTGCGGCATTTTTTCGAACACTTTGTAGTTAGTTTACTCGTATTTTCTGACTAAGCATTGATCTGACTTTGGAGACACACAAAACTTTCCCTTTTACTCACTGCCTAACGTAAATCAGGCATTAGAAACTCAAAAATCAACAATTTGTTTATAGCGGCACCTTTGTCAAACACCTTGTTAATTGTACTCACTACTCACAATTTGGCTCTTTTTTTCAGAACCCATATGGACCAGGGAGCGTCAAATCCTTCCGTGAGTACTCTCCTAATTCTACAATGCTGCTTTGAGTTGTACTTGGATTTCTCTGCAAGGGTTTTTTTTTTTTTTTTTTTTTTAAAATAAAAATTCACAGAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtcatggccggcagtagtggtcgaaacaggAACCCATATGGACCAGGGAGCGTCAAATCCTTCCAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA atggcaatggctaagttcgctgctctcttgcttctcgccctcattgccttttccatgcttcagaccactgtcatggccggcagtagtggtcgaaacaggAACCCATATGGACCAGGGAGCGTCAAATCCTTCCAATGCCCAAATCGATGTGCACCTCGATGCGGGAAAAACACAGTACACACAAGCCATGCAGTTCTTCTGCCAAAAGATGCTGCAGGAAGTGCTTGTGTGTGCCGCCTGGCTACTATGGAAACAAGCCGTTTGCCCTTGCTACAAACAATTGGAAGACAAAGGAAGGAGGACACAATGCCCTTAAAAAACCCCAATTCATTTTGCTGCTAA MAMAKFAALLLLALIAFSMLQTTVMAGSSGRNRNPYGPGSVKSFQCPNRCAPRCGKNTVHTSHAVLLPKDAAGSACVCRLATMETSRLPLLQTIGRQRKEDTMPLKNPNSFCC Homology
BLAST of Clc10G14360 vs. NCBI nr
Match: XP_038903602.1 (gibberellin-regulated protein 4 [Benincasa hispida]) HSP 1 Score: 104.0 bits (258), Expect = 8.7e-19 Identity = 55/77 (71.43%), Postives = 56/77 (72.73%), Query Frame = 0
BLAST of Clc10G14360 vs. NCBI nr
Match: KAG7017706.1 (hypothetical protein SDJN02_19572 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 100.9 bits (250), Expect = 7.4e-18 Identity = 73/138 (52.90%), Postives = 80/138 (57.97%), Query Frame = 0
BLAST of Clc10G14360 vs. NCBI nr
Match: XP_004147472.1 (gibberellin-regulated protein 4 [Cucumis sativus] >KGN59572.1 hypothetical protein Csa_002031 [Cucumis sativus]) HSP 1 Score: 99.0 bits (245), Expect = 2.8e-17 Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 0
BLAST of Clc10G14360 vs. NCBI nr
Match: XP_022935665.1 (gibberellin-regulated protein 4-like [Cucurbita moschata] >XP_022983885.1 gibberellin-regulated protein 4 [Cucurbita maxima] >XP_023528273.1 gibberellin-regulated protein 4-like [Cucurbita pepo subsp. pepo] >KAG6580967.1 Gibberellin-regulated protein 4, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 96.7 bits (239), Expect = 1.4e-16 Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0
BLAST of Clc10G14360 vs. NCBI nr
Match: XP_022933448.1 (gibberellin-regulated protein 4-like isoform X2 [Cucurbita moschata]) HSP 1 Score: 87.0 bits (214), Expect = 1.1e-13 Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy Swiss-Prot
Match: P46690 (Gibberellin-regulated protein 4 OS=Arabidopsis thaliana OX=3702 GN=GASA4 PE=1 SV=2) HSP 1 Score: 51.2 bits (121), Expect = 8.8e-06 Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A0A0LG20 (Gip1-like protein OS=Cucumis sativus OX=3659 GN=Csa_3G826660 PE=3 SV=1) HSP 1 Score: 99.0 bits (245), Expect = 1.4e-17 Identity = 52/77 (67.53%), Postives = 54/77 (70.13%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1J761 (gibberellin-regulated protein 4 OS=Cucurbita maxima OX=3661 GN=LOC111482365 PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17 Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1FBA5 (gibberellin-regulated protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111442454 PE=3 SV=1) HSP 1 Score: 96.7 bits (239), Expect = 6.7e-17 Identity = 53/79 (67.09%), Postives = 57/79 (72.15%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1F4S2 (gibberellin-regulated protein 4-like isoform X2 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=3 SV=1) HSP 1 Score: 87.0 bits (214), Expect = 5.3e-14 Identity = 46/79 (58.23%), Postives = 54/79 (68.35%), Query Frame = 0
BLAST of Clc10G14360 vs. ExPASy TrEMBL
Match: A0A6J1EZT1 (uncharacterized protein LOC111440860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111440860 PE=4 SV=1) HSP 1 Score: 78.6 bits (192), Expect = 1.9e-11 Identity = 54/113 (47.79%), Postives = 62/113 (54.87%), Query Frame = 0
BLAST of Clc10G14360 vs. TAIR 10
Match: AT5G15230.1 (GAST1 protein homolog 4 ) HSP 1 Score: 51.2 bits (121), Expect = 6.3e-07 Identity = 36/80 (45.00%), Postives = 42/80 (52.50%), Query Frame = 0
The following BLAST results are available for this feature:
Relationships
The following mRNA feature(s) are a part of this gene:
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