Clc10G14290 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGACGAAGCAGTTGAAAGAAAATCAAGAACCATTAAACTCCGACGGCGACTTTCCGGCAGCGGCAGCGGAGGAGTCGACGACGTCAATTTGTAATCCTTGTGATTTTCACTCTCCCAAGACGTATAAGGAAGTTGAGACGGATCAGGAAAGCATAGGATCGTCAGAGGAAACAGAGTCGCCGAAATCAGTAGCGAAGGTTGTGGACTGGAGGAAGAAATTAGCGTACGTTCATTACCAGATTCGGAGAATCAGAGAAGAGGATTTGCATCTTCGTGAAGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTACTTCGATCGAAGATTGGTGCGATGTTCGGGTTAATAATCCTCCTCATTCTTTACATAATCATCGCGTTAGTTCTCAGATGAACGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCGGCGGGAAGAATACATTTAGAGCTTTAAGTTAAAGAAGGTACGGTTACTATTGTTTATTTTTTGATTTCAATTCTGAGAAATTAATTGAATCGGTGAGGAAATTGAAGGTTTAGATTCTTGTGATTGAGTTAGTTTTGGCTATTGATTTTGCAGGAGAGATGGAAAAGAGAAAGCTAATAGTTAGAACTGCCATGGAAGTGAAAAATTGGGGAAGGTTTTGATCTTTGGTTTATGGGTGCACAGATTTTAGGGTTTGTTTGAATGTGGAAGGAAAAATTTAGTGAAACGGAGCGATCAAACCCTACTGTAAAGTCTAATCTCAATCGTAAAAGAGAGAAGAAATTGCATGAATCCTGATTATGTAAATAAATTTCCTGGCTGTTTTTGTT ATGACGAAGCAGTTGAAAGAAAATCAAGAACCATTAAACTCCGACGGCGACTTTCCGGCAGCGGCAGCGGAGGAGTCGACGACGTCAATTTGTAATCCTTGTGATTTTCACTCTCCCAAGACGTATAAGGAAGTTGAGACGGATCAGGAAAGCATAGGATCGTCAGAGGAAACAGAGTCGCCGAAATCAGTAGCGAAGGTTGTGGACTGGAGGAAGAAATTAGCGTACGTTCATTACCAGATTCGGAGAATCAGAGAAGAGGATTTGCATCTTCGTGAAGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTACTTCGATCGAAGATTGGTGCGATGTTCGGGTTAATAATCCTCCTCATTCTTTACATAATCATCGCGTTAGTTCTCAGATGAACGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCGGCGGGAAGAATACATTTAGAGCTTTAAGAGAGATGGAAAAGAGAAAGCTAATAGTTAGAACTGCCATGGAAGTGAAAAATTGGGGAAGGTTTTGATCTTTGGTTTATGGGTGCACAGATTTTAGGGTTTGTTTGAATGTGGAAGGAAAAATTTAGTGAAACGGAGCGATCAAACCCTACTGTAAAGTCTAATCTCAATCGTAAAAGAGAGAAGAAATTGCATGAATCCTGATTATGTAAATAAATTTCCTGGCTGTTTTTGTT ATGACGAAGCAGTTGAAAGAAAATCAAGAACCATTAAACTCCGACGGCGACTTTCCGGCAGCGGCAGCGGAGGAGTCGACGACGTCAATTTGTAATCCTTGTGATTTTCACTCTCCCAAGACGTATAAGGAAGTTGAGACGGATCAGGAAAGCATAGGATCGTCAGAGGAAACAGAGTCGCCGAAATCAGTAGCGAAGGTTGTGGACTGGAGGAAGAAATTAGCGTACGTTCATTACCAGATTCGGAGAATCAGAGAAGAGGATTTGCATCTTCGTGAAGATATCGGCGAAGGCTTCAACGCGAAAGAGAAGATTACTTCGATCGAAGATTGGTGCGATGTTCGGGTTAATAATCCTCCTCATTCTTTACATAATCATCGCGTTAGTTCTCAGATGAACGTTGTAATTTTCTCGAGGCCGATTTTGCCTAGCTCGCCGCTCGGCGGGAAGAATACATTTAGAGCTTTAAGAGAGATGGAAAAGAGAAAGCTAATAGTTAGAACTGCCATGGAAGTGAAAAATTGGGGAAGGTTTTGA MTKQLKENQEPLNSDGDFPAAAAEESTTSICNPCDFHSPKTYKEVETDQESIGSSEETESPKSVAKVVDWRKKLAYVHYQIRRIREEDLHLREDIGEGFNAKEKITSIEDWCDVRVNNPPHSLHNHRVSSQMNVVIFSRPILPSSPLGGKNTFRALREMEKRKLIVRTAMEVKNWGRF Homology
BLAST of Clc10G14290 vs. NCBI nr
Match: XP_008443420.1 (PREDICTED: uncharacterized protein LOC103487011 [Cucumis melo] >KAA0053752.1 uncharacterized protein E6C27_scaffold135G001310 [Cucumis melo var. makuwa] >TYK25651.1 uncharacterized protein E5676_scaffold352G008140 [Cucumis melo var. makuwa]) HSP 1 Score: 269.6 bits (688), Expect = 1.9e-68 Identity = 138/160 (86.25%), Postives = 142/160 (88.75%), Query Frame = 0
BLAST of Clc10G14290 vs. NCBI nr
Match: KAE8651222.1 (hypothetical protein Csa_001107 [Cucumis sativus]) HSP 1 Score: 268.5 bits (685), Expect = 4.2e-68 Identity = 138/161 (85.71%), Postives = 140/161 (86.96%), Query Frame = 0
BLAST of Clc10G14290 vs. NCBI nr
Match: XP_011652239.2 (uncharacterized protein LOC105435002 [Cucumis sativus]) HSP 1 Score: 268.5 bits (685), Expect = 4.2e-68 Identity = 138/161 (85.71%), Postives = 140/161 (86.96%), Query Frame = 0
BLAST of Clc10G14290 vs. NCBI nr
Match: XP_022934173.1 (uncharacterized protein LOC111441419 [Cucurbita moschata]) HSP 1 Score: 249.2 bits (635), Expect = 2.6e-62 Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 0
BLAST of Clc10G14290 vs. NCBI nr
Match: KAG7017711.1 (hypothetical protein SDJN02_19577, partial [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 248.8 bits (634), Expect = 3.5e-62 Identity = 129/159 (81.13%), Postives = 136/159 (85.53%), Query Frame = 0
BLAST of Clc10G14290 vs. ExPASy TrEMBL
Match: A0A5D3DPQ0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G008140 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 9.2e-69 Identity = 138/160 (86.25%), Postives = 142/160 (88.75%), Query Frame = 0
BLAST of Clc10G14290 vs. ExPASy TrEMBL
Match: A0A1S3B7Y8 (uncharacterized protein LOC103487011 OS=Cucumis melo OX=3656 GN=LOC103487011 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 9.2e-69 Identity = 138/160 (86.25%), Postives = 142/160 (88.75%), Query Frame = 0
BLAST of Clc10G14290 vs. ExPASy TrEMBL
Match: A0A0A0LFA4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G827220 PE=4 SV=1) HSP 1 Score: 268.5 bits (685), Expect = 2.0e-68 Identity = 138/161 (85.71%), Postives = 140/161 (86.96%), Query Frame = 0
BLAST of Clc10G14290 vs. ExPASy TrEMBL
Match: A0A6J1F6X8 (uncharacterized protein LOC111441419 OS=Cucurbita moschata OX=3662 GN=LOC111441419 PE=4 SV=1) HSP 1 Score: 249.2 bits (635), Expect = 1.3e-62 Identity = 130/159 (81.76%), Postives = 136/159 (85.53%), Query Frame = 0
BLAST of Clc10G14290 vs. ExPASy TrEMBL
Match: A0A438HDT5 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=CK203_037425 PE=4 SV=1) HSP 1 Score: 112.5 bits (280), Expect = 1.9e-21 Identity = 65/115 (56.52%), Postives = 75/115 (65.22%), Query Frame = 0
BLAST of Clc10G14290 vs. TAIR 10
Match: AT5G15190.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 2.9e-06 Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0
BLAST of Clc10G14290 vs. TAIR 10
Match: AT5G15190.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; Has 7 Blast hits to 7 proteins in 3 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 7; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 49.7 bits (117), Expect = 2.9e-06 Identity = 42/112 (37.50%), Postives = 59/112 (52.68%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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