Clc10G12920 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G12920
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 26477756 .. 26478836 (+)
RNA-Seq ExpressionClc10G12920
SyntenyClc10G12920
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATTCAAACAATAAATAAACTATATATATATTTTCCTTTATTCTAATTCCAATTGGAATTGTCAGGCATTTCCTATAAATAACTCATTATAAGTGCACTTCTATATCATCACACCAAAGTCGTCTTCTTTCTTCTTTCTTCTTTCTTCTTCTTCCTTCTCTTCCATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAGTCCCACCTAGTATTCTAATTTTATAACAATATATATATATATATATATATTGTTTGGGTTTGGTTTCTTGCCAATCCGTTTAGTGTAATTTTGATTTGATTTGAAGTCCAAAGCTATTTATTTGTCTGAGCTTTGAGAGAATAATACAAAAATGAAGGAACAGAGACCTTCTTCCTCAAACTTACTCTGTTTTTTATTTCTCCAATAACTGTCTAAATTAAATTTCATTATATTTTTGTTCCATTTCATCATATTGTTTTCATAATTTTGAAAAATAAATAATTAAATTTTGCATATTTGAAAGTGGATTTGAAATTTCTCCCCAACAAAAAGAAAAAAAAAAGTTATGAAAGAGAGGCGAATAATTTTAAATTTAGAATACATCATATCAAATTATAATAAAAAAAAATAACAAATAAAAATATTCGTTTATCTTGATTGGGAAAGAAAAACGTTTTGTAAGTGATATGAAGGATGATCCAAGCAAATTATAATTTATTTTTATTAAGTAATTAATGCACTCTAATTTCAATTTGAATTTTAAAAGGATAGTTCAAAGAACTTTTCAAGTTAAAAGTGGGTGGGTGTGGGCGGCATATTAAAATAAAAACGACTTTAGAATGAAAAGAAAAAAAGAAAGAGTTGGAATTTGGATTCTTTCTCCACCGTTAGTCAAAATTAGGAGTGCCC

mRNA sequence

ATTCAAACAATAAATAAACTATATATATATTTTCCTTTATTCTAATTCCAATTGGAATTGTCAGGCATTTCCTATAAATAACTCATTATAAGTGCACTTCTATATCATCACACCAAAGTCGTCTTCTTTCTTCTTTCTTCTTTCTTCTTCTTCCTTCTCTTCCATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAGTCCCACCTAGTATTCTAATTTTATAACAATATATATATATATATATATATTGTTTGGGTTTGGTTTCTTGCCAATCCGTTTAGTGTAATTTTGATTTGATTTGAAGTCCAAAGCTATTTATTTGTCTGAGCTTTGAGAGAATAATACAAAAATGAAGGAACAGAGACCTTCTTCCTCAAACTTACTCTGTTTTTTATTTCTCCAATAACTGTCTAAATTAAATTTCATTATATTTTTGTTCCATTTCATCATATTGTTTTCATAATTTTGAAAAATAAATAATTAAATTTTGCATATTTGAAAGTGGATTTGAAATTTCTCCCCAACAAAAAGAAAAAAAAAAGTTATGAAAGAGAGGCGAATAATTTTAAATTTAGAATACATCATATCAAATTATAATAAAAAAAAATAACAAATAAAAATATTCGTTTATCTTGATTGGGAAAGAAAAACGTTTTGTAAGTGATATGAAGGATGATCCAAGCAAATTATAATTTATTTTTATTAAGTAATTAATGCACTCTAATTTCAATTTGAATTTTAAAAGGATAGTTCAAAGAACTTTTCAAGTTAAAAGTGGGTGGGTGTGGGCGGCATATTAAAATAAAAACGACTTTAGAATGAAAAGAAAAAAAGAAAGAGTTGGAATTTGGATTCTTTCTCCACCGTTAGTCAAAATTAGGAGTGCCC

Coding sequence (CDS)

ATGGCAGGTCTTCAATACAAGTTCTTCCCCACCGACTTTCTTTACCCTCGTCTGCCGTCGTCCGACGTCGTCCCCGACAACATCGTCGTCTCCGTCGTTCCTCCCAAACCCGACGATCCAGCTGCGAAGCCCAAGGGACCGATCCACCACCAAACCTTCCTGCAAGCCAATAAGAAGGCTGTTGTTGAACCTATTGTCTCTCGGAGCCCCAAAAAGTCCAATTTCTAG

Protein sequence

MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKAVVEPIVSRSPKKSNF
Homology
[Close]
BLAST of Clc10G12920 vs. NCBI nr
Match: KAA0057217.1 (hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 55/77 (71.43%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKGP    T  +A    
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGP-KSLTNNKAGVVV 60

Query: 61 VVEPIV-SRS-PKKSNF 76
          VVEPIV SR+ PK SNF
Sbjct: 61 VVEPIVISRNIPKSSNF 76

[Close]
BLAST of Clc10G12920 vs. NCBI nr
Match: KGN59725.1 (hypothetical protein Csa_002570 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 3.0e-15
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKG IH       NK A
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTN----NKAA 60

Query: 61 V-VEPIV--SRSPKKSNF 76
          V VEPIV    +PK S F
Sbjct: 61 VAVEPIVISRNNPKNSTF 74

[Close]
BLAST of Clc10G12920 vs. NCBI nr
Match: KAG6581666.1 (putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 77.0 bits (188), Expect = 7.6e-11
Identity = 45/71 (63.38%), Postives = 50/71 (70.42%), Query Frame = 0 

Query: 4   LQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKAVVE 63
           LQYKFFPTDFLYPR PSSDV  DNI VSVVPPK DD +A  KG +H      AN K  V+
Sbjct: 507 LQYKFFPTDFLYPRPPSSDVA-DNI-VSVVPPKSDDSSANSKGRLH------ANNKPAVQ 566

Query: 64  PIVSRSPKKSN 75
           PIV+ +P  SN
Sbjct: 567 PIVAPAPNPSN 569

[Close]
BLAST of Clc10G12920 vs. ExPASy TrEMBL
Match: A0A5A7URF0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G00510 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 8.4e-16
Identity = 55/77 (71.43%), Postives = 58/77 (75.32%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKGP    T  +A    
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGP-KSLTNNKAGVVV 60

Query: 61 VVEPIV-SRS-PKKSNF 76
          VVEPIV SR+ PK SNF
Sbjct: 61 VVEPIVISRNIPKSSNF 76

[Close]
BLAST of Clc10G12920 vs. ExPASy TrEMBL
Match: A0A0A0LCI2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.4e-15
Identity = 54/78 (69.23%), Postives = 56/78 (71.79%), Query Frame = 0 

Query: 1  MAGLQYKFFPTDFLYPRLPSSDVVPDNIVVSVVPPKPDDPAAKPKGPIHHQTFLQANKKA 60
          MAGLQYKFFPTDFLYPR  SS  VP+NIVVSVVPPKPDD  AKPKG IH       NK A
Sbjct: 1  MAGLQYKFFPTDFLYPRPSSSSDVPNNIVVSVVPPKPDDLTAKPKGAIHSTN----NKAA 60

Query: 61 V-VEPIV--SRSPKKSNF 76
          V VEPIV    +PK S F
Sbjct: 61 VAVEPIVISRNNPKNSTF 74

The following BLAST results are available for this feature:
BLAST of Clc10G12920 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0057217.11.7e-1571.43hypothetical protein E6C27_scaffold280G00510 [Cucumis melo var. makuwa][more]
KGN59725.13.0e-1569.23hypothetical protein Csa_002570 [Cucumis sativus][more]
KAG6581666.17.6e-1163.38putative galacturonosyltransferase 14, partial [Cucurbita argyrosperma subsp. so... [more]
BLAST of Clc10G12920 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G12920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7URF08.4e-1671.43Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A0A0LCI21.4e-1569.23Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G841490 PE=4 SV=1[more]
BLAST of Clc10G12920 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G12920.1Clc10G12920.1mRNA