Clc10G12560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G12560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Tryptophan synthase
Location	ClcChr10: 26158030 .. 26163603 (-)
RNA-Seq Expression	Clc10G12560
Synteny	Clc10G12560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTCAATAAAGTACGAAAAATTCGGATTTTAAAGCTTCCATTAAAATGGAAATGTCGTCCTAAAACCAGGATTGATTGCTCTCCCAATGGAGCTTTCAAGTGAGATTCAAATCTCTGTTTCTAATTTTTCATTTGGAAGCTTTTCTTTAGAGATCCTCCAACCTTCTCAAATAATCATAACTGCAAGCAGCAGATTCAAACAATATCATTCCCAACTCTCAGATTCTGGTGGGTTTTGATCCTTTTTTACCTTCCTTCTTTGCATCAATGCTATAATAAGCAAGATCTATTGCTGTATGTCAAACCAAACAAAAACTGAACCAACAAAATTCAACCCATCCAAACCATTAAGCCGCCATTTTTTAGCCTCTTGTTCTACAAAACTTCTCCATACAACAACCCCAATACGGCTTGTTTTTTGTAACTGCGGCCGTTGTAAAAATCGACCTCCTAAACTTCGTATTTATTATGTATTTGAATGTGAAGAGTTTTTGAATCGAATTGAATTGGGGGAGAAGAAACCCATTTCACCAATCTAAATTTCCACCAAAACCCTCTTTACCAAATGGACATTGCATTCAAATCTTCGAGGTTTCTTCCGCTCAACAAGATACCCAGTACGCCTGCCTTTTCTTCACGTCCTTGTAAGATTTCAGTCTCCCAATCCAAGCGGTTTGCTCCAATGGCTGCTCTTGCAGCTTCCCCTGCTGTTGGACTGTCCGAAACCTTCAACAAATTGAGAGAACAAGGGAAGGTAAATGTCTCTTTCTACTGTTTACAATGTATCAATAACTTCATCTTTTTCTTTTTTTTTTTTACTCTGCCTTTTCTGTATGAAATCTTTATATGGTTTGTTTGTTTGTTTGAATTTTCAATTGTTTTCATTGGATTATACTTTTTTTGCATTTGGTGTTTTGTTGGTTGGTATTGAAAGGACAAGTTATGTGCTTGTATGTATGGGAGTGATTTTGAAATTGTTGAAATCAACTTTGCATGTTCAAAATAACTTCGAAATATGTCTTTAATCACTGAAAATTAGTTTAATATTTAATTTCAATTTTCATGTAATCAAAATTGGTTTTGAATAATTAAAAACATATTTGAGAGTAATTTTGAAAATGACAAAAGTAATTTTTTGGTATTTGAGAGATTGTCTTTTTGATATCTACTTTAAAAAGTTGTTAAGAACTTATAGGCTTGTGTTTATTTATTCTCTGGACTTTAAAAAGATTATAGTACATTCTTAAACTTGTAAGTAGTTGTTGTTAGCTCCGTCAATTTAAGGCTTGGTTCACCTAATGTTTGAACCGACTTGAAATCAGCTTGCCATCTAATCCGCAAGTAATGCAATCAACATGTCACATAAGCGTTGAATTGACAGAATTGACGATGGAGACCTATTAGACATAAAAGTAAAAGTTTAAGATCTACCAGAAACATTTTGAAGTAATTAGATAGACACAACCTTGAATGGTGAAGGTCCTATTAGAATCTATTTGAAATACTGAGACTAGACTCAACTTCAAATTTATTGGTTCTGTCTGCTACTTTCTATGTGGTCTGATGGGATTTTTTCATTGATCAACGCTGTCCTAACTGCATTCTTGCTTTAAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCCACCACGGCTGAGGCATTGAAGGTGCTTTCGACTTGTGGATCAGATATAATTGAACTTGGTGTTCCCTATTCGGATCCCTTGGCAGATGGTCCTGTTATACAGGTTACTTTCTTCTCTTTTTTTTTTCCCCTCCCTTTCAATTCTCCATTTCTAATCTATTGTTCCTTATTCGCTGTTTTATGACTGTTTTTCTGTAGGCTGCAGCCACTCGGTCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGAAGGGGGTAATATTGTTCTACCATGCAACATGCTGTAAATAATATCAGCTTTTATTCCACTTTGAGGCAATTAGAAAGAATAGCCAAAACTTATTTTGTTCGCTATTTCTATTATGACTTATGATATGACAGATCTTTTTTTTTTCTTTTTTCTTTTTTGGGAAACTAGATATAATGAAGTGTAGTAACGAAATCATTTAGATGATGATGCATTTCGACAGACTGTCAAGTTTAGTACTCAAATTGTTAGGAAACTTGGAGTTTGCATGTTCATTTTTTCACATGGCATCTTCAAATAAAATGTCTATGGAAATATTTACCCAGTACGCTGTGGTTCACTGCCCTTTAGCCTTTCATTCATGAAACATACAGTCTAACATGTTTTTGTTTTGTTTCTGGCTGGTCAGGTGATTCCTGAACTATCTTGTCCAATTTCCCTTTTTACATATTATAACCCAATTCTTAAACGTGGCATTGAGAACTTTATGATGATAATAAAAGATGCTGGTGTGCGAGGTAATTAATGAGCTTGCCAAATTTTCTTCTAATGAATTAGATTTTTTTATAATTAATTTAACACTGTCCTACTTCGAAGATGACATGGTAAAGGCTAGGCCAATGGTTAATTTTGTAAGTATAGGGTTAGGTTACTAGTTAGGTGGTGGTGGCTTGAGCAAGAGGCTACTACCCAATAGGGCAAAATGAATTTACCTTGGAACATTATTTGTGTCTATTTCAATTCCCCGTTGATTATTGAACTTTAGACAATCAACTACATGATTATTTTTCAGGAGCCTAAAATACAACAGTTTAAAAGAATATGCCATTACTCCTAATAGTATTGGATGGGTGCTGATGTTTGAATTCTTTAAAAAACTGGAATATTTTATTTAAAGCTGTATAGAATATTGCATGAGTTTTTCAATATGTTATGAAGTGTTGTCAACCAACCATAACCAACCATAATTCAATGGATAAAGACACCAATTATCATCTCAAATGTCGATGGTTCAATTCCCATGTATTATTACATGTAATGTACAAAATCTTGACTTGGTTTTTCTTTGTTAGAAAGTTCCATGGGAAGTGTGTCATATTTCTCAACATTGGGTTCGTGAATATGTTTGTGGACTGTGCTCACATTTCACTTTCTTACAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGAAATTTTAAGAAAGGAAGCTGTAAAGTACAATATTGAACTGGTAATTTCTTTTTCTCGTAATGGTTGTATAGACTATCTAAATCATTTGCTAGTTTTTAGGTTTTGATATTTATTTCACTTTTACCTTGGGATATTGGACTCTGTGCTTTTAGACCTCTGGAACATGGATGCTGAGCATGTGAAACACTTCACAGATCGTGATAACTGCTTCATTGCAGTTCTTAAAGATTAGTTTTATTAATTGCCTGAACCTGAAGGAAAGACCTTCAGGAGCGGATAATGAGAAGAAACTTTCTGGATCAATTGTTCAACTATACCAACTTGCATTTTTTTCTCTTTATGACCAACTTAATGAGGAAATGAATAGCCAATTCGTTGACTCATTCTTGTTACAGTCACTTTACTATAAGAAAAAAACTTGGTCGTTAAACCTTGAGTTGATTGCTTGTTCTTATGTTTATGTATTTTATATTATTCTTTTACATTGCTAAAGGTACTCTTAACTACACCAACCACGCCAAAAGATAGGATGAAAAACATCGCTGAAGCTTCAGAGGGATTTGTTTATCTTGTAAGGCCTTTTCTGTTTTATCTCTCTTTATATGCTCTAACTATTGATCTTTGTCATCTCATTGGAGCCTACTGGTCTCATTTATAAAAAGATGAAGTTTAGTAATTTTCTTTCTATCTTGAATTTAATATTCAAAATTAATTTAATTCCACACATATTTCTATCACAAAATAAGAAAAGAGGAGTTCATATTGAAGTTCTTTCTTGAAATTATTTTGCTAGCATCATAGAAGCATATCTAGTGTGTTCCCAAGATTCTTTTTTCAGAATGACATTAACAATGTGGGTGTCGATGAGACTTATCCTTTGCCTTATTCCTTCAAATTGACATGCTGGAATGTTGAGAAAGTTTAGACACCTAAGTCTCAGCTCTTATTATACAAGATCATTACCAAAGTTATAGGTAAAAGACTTGAAAGTTCCTTCCAAACTCGATTATTGAATTTCAAAAACCTTTCATTGGGGATTAAAAAGGGGTGAGGTCATTAAGTTGGGCCTCGAAGAAACTGTTGATAAAACTGATTGGAGCTTTTTAAATGCACTTGCTTTGCTGCTTGTCTCTCTGGTGCCAATTCCTCTGTCATTACCCATGGAAAACCAAGAGGGAAGATCAAGGCTTTTCGAGGAATTAAGCCAGGGGACCTCTTCTCCCCTTTTCCTTTGCTCCAAAAGTTAAATGATTCTGAATTAGTGAAAGGATTCAAAGTTGGTAGAAGCAACTTAATTATTTTATCTTATTATACATCTTTTTTATGAGAAACTAAACTTTTGTAGAGATGAATAAAAGGACGAACAATTATGAAAAGAAAATTGCTACTATAAGAGAGACAATGAAATTGAAGAGACCAAAAACGAAAGAAAGTTGCAGTAAAAGGCTCTAATTGTTTCCAAAAGTCTTGATGTTGGATTAACAATATTCCTTTGGGAGAAGAGAGACTGACTTCTGCTTGATGGGAGTATATTGTTCTCGTGGCTTTGTCTTCATGTACAGACAGAATTTTATAGATAGCATAGAGAGAGAGAGAGCAAGGATTTTGATGAGAAAACAATTTTCTCCCTTTATCATTATTGAATTAACGTTTCGTTGTCAAATTAGACTTCTATTGTCATTCACTGTCTTACTTGCGATATGAAATATATTGTTCAAATCGTAGGTGAGCTCCGTTGGAGTTACCGGTACCCGCACATCAGTTAGTGGTAGAGTTCAAACTCTCCTTGAGGAAGTTAAAGAGGTATGTCAATAGTCAATATATGAGGAAGTACTTGCAGTAAATACAAATTTGTACTTGAAAACAAAGTTTTGGACTTCGAAACCTAATGGTGTTTGAAAGGCATTGATTTGCAACTGATGAATAACTTAGACGCCTCACAATCTGCTTTCCACGACAGGTTACGAAAAAACCAGTAGCAGTTGGTTTTGGTATATCAAAACCCGAGCATGTGAAACAGGTAAAGAACTTCCTCACATAACATAACATCCAATCAATTGTACAATCTATTTGATATGTACTTGCTGGTGTTCATAGGTGGCTGACTGGGGGGCAGATGGTATTATTATTGGTAGTGCTATGGTGAAGCTGTTGGGTGAAGCCCAATCCCCTGAGGAAGGATTGAAGGAGCTTGAAAACTTCACCATATCCTTGAAATCTGCACTCTCTTGATGGCATAACCCAGGCTGTTTCTTTCATCTGTAAACAAGTGCTCAACTTGCACTGTCATCCTAAAATTACACTTCCAATATTTCCCTGTTCTTCTTTTTTGAAACAGTATTTCCCTTTTCTTTTAACAGTGAATAAAATTATCAGCTCGTATTTTCTTCGAAGTTATTTGCCATGGAATATTATGAGAATATTTTCTAGTATTTTCTTGGTAGCCGATGGATGATTGCAAG

mRNA sequence

GTTCAATAAAGTACGAAAAATTCGGATTTTAAAGCTTCCATTAAAATGGAAATGTCGTCCTAAAACCAGGATTGATTGCTCTCCCAATGGAGCTTTCAAGTGAGATTCAAATCTCTGTTTCTAATTTTTCATTTGGAAGCTTTTCTTTAGAGATCCTCCAACCTTCTCAAATAATCATAACTGCAAGCAGCAGATTCAAACAATATCATTCCCAACTCTCAGATTCTGGTGGGTTTTGATCCTTTTTTACCTTCCTTCTTTGCATCAATGCTATAATAAGCAAGATCTATTGCTGTATGTCAAACCAAACAAAAACTGAACCAACAAAATTCAACCCATCCAAACCATTAAGCCGCCATTTTTTAGCCTCTTGTTCTACAAAACTTCTCCATACAACAACCCCAATACGGCTTGTTTTTTGTAACTGCGGCCGTTGTAAAAATCGACCTCCTAAACTTCGTATTTATTATGTATTTGAATGTGAAGAGTTTTTGAATCGAATTGAATTGGGGGAGAAGAAACCCATTTCACCAATCTAAATTTCCACCAAAACCCTCTTTACCAAATGGACATTGCATTCAAATCTTCGAGGTTTCTTCCGCTCAACAAGATACCCAGTACGCCTGCCTTTTCTTCACGTCCTTGTAAGATTTCAGTCTCCCAATCCAAGCGGTTTGCTCCAATGGCTGCTCTTGCAGCTTCCCCTGCTGTTGGACTGTCCGAAACCTTCAACAAATTGAGAGAACAAGGGAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCCACCACGGCTGAGGCATTGAAGGTGCTTTCGACTTGTGGATCAGATATAATTGAACTTGGTGTTCCCTATTCGGATCCCTTGGCAGATGGTCCTGTTATACAGGCTGCAGCCACTCGGTCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGAAGGGGGTGATTCCTGAACTATCTTGTCCAATTTCCCTTTTTACATATTATAACCCAATTCTTAAACGTGGCATTGAGAACTTTATGATGATAATAAAAGATGCTGGTGTGCGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGAAATTTTAAGAAAGGAAGCTGTAAAGTACAATATTGAACTGGTACTCTTAACTACACCAACCACGCCAAAAGATAGGATGAAAAACATCGCTGAAGCTTCAGAGGGATTTGTTTATCTTGTGAGCTCCGTTGGAGTTACCGGTACCCGCACATCAGTTAGTGGTAGAGTTCAAACTCTCCTTGAGGAAGTTAAAGAGGTTACGAAAAAACCAGTAGCAGTTGGTTTTGGTATATCAAAACCCGAGCATGTGAAACAGGTGGCTGACTGGGGGGCAGATGGTATTATTATTGGTAGTGCTATGGTGAAGCTGTTGGGTGAAGCCCAATCCCCTGAGGAAGGATTGAAGGAGCTTGAAAACTTCACCATATCCTTGAAATCTGCACTCTCTTGATGGCATAACCCAGGCTGTTTCTTTCATCTGTAAACAAGTGCTCAACTTGCACTGTCATCCTAAAATTACACTTCCAATATTTCCCTGTTCTTCTTTTTTGAAACAGTATTTCCCTTTTCTTTTAACAGTGAATAAAATTATCAGCTCGTATTTTCTTCGAAGTTATTTGCCATGGAATATTATGAGAATATTTTCTAGTATTTTCTTGGTAGCCGATGGATGATTGCAAG

Coding sequence (CDS)

ATGGACATTGCATTCAAATCTTCGAGGTTTCTTCCGCTCAACAAGATACCCAGTACGCCTGCCTTTTCTTCACGTCCTTGTAAGATTTCAGTCTCCCAATCCAAGCGGTTTGCTCCAATGGCTGCTCTTGCAGCTTCCCCTGCTGTTGGACTGTCCGAAACCTTCAACAAATTGAGAGAACAAGGGAAGGTCGCATTGATCCCCTACATCACTGCTGGTGATCCTGATCTTTCCACCACGGCTGAGGCATTGAAGGTGCTTTCGACTTGTGGATCAGATATAATTGAACTTGGTGTTCCCTATTCGGATCCCTTGGCAGATGGTCCTGTTATACAGGCTGCAGCCACTCGGTCCTTGGCTAGGGAGACAAACTTTAATGCAATCATTTCTATGCTGAAGGGGGTGATTCCTGAACTATCTTGTCCAATTTCCCTTTTTACATATTATAACCCAATTCTTAAACGTGGCATTGAGAACTTTATGATGATAATAAAAGATGCTGGTGTGCGAGGGCTTGTTGTTCCAGATGTTCCTCTTGAGGAGACTGAAATTTTAAGAAAGGAAGCTGTAAAGTACAATATTGAACTGGTACTCTTAACTACACCAACCACGCCAAAAGATAGGATGAAAAACATCGCTGAAGCTTCAGAGGGATTTGTTTATCTTGTGAGCTCCGTTGGAGTTACCGGTACCCGCACATCAGTTAGTGGTAGAGTTCAAACTCTCCTTGAGGAAGTTAAAGAGGTTACGAAAAAACCAGTAGCAGTTGGTTTTGGTATATCAAAACCCGAGCATGTGAAACAGGTGGCTGACTGGGGGGCAGATGGTATTATTATTGGTAGTGCTATGGTGAAGCTGTTGGGTGAAGCCCAATCCCCTGAGGAAGGATTGAAGGAGCTTGAAAACTTCACCATATCCTTGAAATCTGCACTCTCTTGA

Protein sequence

MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLEETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKELENFTISLKSALS

Homology

[Close]

BLAST of Clc10G12560 vs. NCBI nr
Match: XP_038906368.1 (tryptophan synthase alpha chain-like [Benincasa hispida])

HSP 1 Score: 567.0 bits (1460), Expect = 1.0e-157
Identity = 297/312 (95.19%), Postives = 301/312 (96.47%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           M IAFKSS F PLNKIPS+P FS RPCKISV +SKRFAPMA LAASP VGLSETFNKLRE
Sbjct: 1   MAIAFKSSSFRPLNKIPSSPIFSPRPCKISVFKSKRFAPMATLAASPVVGLSETFNKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCPISLFTYYN ILKRGIENF+MIIKDAGVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNLILKRGIENFVMIIKDAGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETEILRKEAVKYNIELVLLTTPTTPKDRMK+IAEASEGFVYLVSSVGVTGTRTSVSGRVQ
Sbjct: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKDIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT KPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTDKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTKSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. NCBI nr
Match: XP_008465320.1 (PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo] >KAA0051282.1 tryptophan synthase alpha chain-like isoform X1 [Cucumis melo var. makuwa] >TYK29979.1 tryptophan synthase alpha chain-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 563.1 bits (1450), Expect = 1.5e-156
Identity = 291/312 (93.27%), Postives = 300/312 (96.15%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFK SR LPLNKIP+T  FS RPCKISVSQ+KRFAPMAALAA P VGLSETF KLRE
Sbjct: 1   MDIAFKPSRILPLNKIPNTLIFSPRPCKISVSQTKRFAPMAALAAYPVVGLSETFKKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRG+ENFMMIIKD GVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMK I EASEGFVYLVSS+GVTGTRTSVSGRVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKKIVEASEGFVYLVSSIGVTGTRTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTKSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. NCBI nr
Match: XP_004141207.1 (tryptophan synthase alpha chain [Cucumis sativus] >KGN59758.1 hypothetical protein Csa_002167 [Cucumis sativus])

HSP 1 Score: 557.4 bits (1435), Expect = 8.0e-155
Identity = 290/312 (92.95%), Postives = 298/312 (95.51%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFKSSR LPLNKIP+T  FS RPCKISVSQSKRFAPMAALAA P VGLSETF  LRE
Sbjct: 1   MDIAFKSSRILPLNKIPNTLIFSPRPCKISVSQSKRFAPMAALAAYPVVGLSETFKNLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLS CGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSKCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELS PISLFTYYNPILKRG+ENFMMIIKD GVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSRPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMKNI EASEGFVYLVSS+GVTGTRTSVS RVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKNIVEASEGFVYLVSSIGVTGTRTSVSSRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTRSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. NCBI nr
Match: XP_022932801.1 (tryptophan synthase alpha chain-like [Cucurbita moschata])

HSP 1 Score: 552.0 bits (1421), Expect = 3.3e-153
Identity = 283/312 (90.71%), Postives = 297/312 (95.19%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFKSSRFLPLNKIP+T   S RPC ISV QSKRFAP+AAL ASPA GLSETFNKLRE
Sbjct: 1   MDIAFKSSRFLPLNKIPTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATR+LA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRALA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCP+SLF+YYNPILKRGIENFMM I+DAGVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPVSLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ET +LR+EAVKYNIELVLLTTPTTPKDRMKNI EASEGFVYLVSSVGVTG RTSVSGRVQ
Sbjct: 181 ETAVLREEAVKYNIELVLLTTPTTPKDRMKNIVEASEGFVYLVSSVGVTGARTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           +LLEE+KEVT+KPVAVGFGISKPEHVKQVA WGADG+I+GSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 SLLEEIKEVTEKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           E FT SL+SALS
Sbjct: 301 ETFTKSLRSALS 312

[Close]

BLAST of Clc10G12560 vs. NCBI nr
Match: XP_023528646.1 (tryptophan synthase alpha chain-like [Cucurbita pepo subsp. pepo] >XP_023528647.1 tryptophan synthase alpha chain-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 551.6 bits (1420), Expect = 4.4e-153
Identity = 283/312 (90.71%), Postives = 296/312 (94.87%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFKSSRFLPLNKIP+T   S RPC ISV QSKRFAP+AAL ASPA GLSETFNKLRE
Sbjct: 1   MDIAFKSSRFLPLNKIPTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATR+L 
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRALV 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCP+SLF+YYNPILKRGIENFMM I+DAGVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPVSLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ET +LR+EAVKYNIELVLLTTPTTPKDRMKNI EASEGFVYLVSSVGVTG RTSVSGRVQ
Sbjct: 181 ETAVLREEAVKYNIELVLLTTPTTPKDRMKNIVEASEGFVYLVSSVGVTGARTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           +LLEE+KEVT+KPVAVGFGISKPEHVKQVA WGADG+I+GSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 SLLEEIKEVTEKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           E FT SLKSALS
Sbjct: 301 ETFTKSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot
Match: O22765 (Tryptophan synthase alpha chain OS=Arabidopsis thaliana OX=3702 GN=TRPA1 PE=1 SV=2)

HSP 1 Score: 423.3 bits (1087), Expect = 2.4e-117
Identity = 211/266 (79.32%), Postives = 241/266 (90.60%), Query Frame = 0


Query: 46  SPAVGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPL 105
           S  VGLSETF +L+ QGKVALIPYITAGDPDLSTTA+ALKVL +CGSDIIELGVPYSDPL
Sbjct: 8   SSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSDPL 67

Query: 106 ADGPVIQAAATRSLARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIK 165
           ADGP IQAAA RSL + TNFN+IISMLK VIP+LSCPI+LFTYYNPIL+RG+EN+M +IK
Sbjct: 68  ADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIK 127

Query: 166 DAGVRGLVVPDVPLEETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSS 225
           +AGV GL+VPDVPLEETE LR EA K+ IELVLLTTPTTPK+RM  I EASEGF+YLVSS
Sbjct: 128 NAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLVSS 187

Query: 226 VGVTGTRTSVSGRVQTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVK 285
           VGVTGTR SV+ +VQ+LL+++KE T KPVAVGFGISKPEHVKQVA+WGADG+I+GSAMVK
Sbjct: 188 VGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAMVK 247

Query: 286 LLGEAQSPEEGLKELENFTISLKSAL 312
           +LGE++SPE+GLKELE FT SLKSAL
Sbjct: 248 ILGESESPEQGLKELEFFTKSLKSAL 273

[Close]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot
Match: Q42529 (Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TSA1 PE=1 SV=1)

HSP 1 Score: 422.2 bits (1084), Expect = 5.2e-117
Identity = 221/312 (70.83%), Postives = 257/312 (82.37%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALA-ASPAVGLSETFNKLR 60
           M IAFKS  F  L    S   F       S    KRF PMA+L+ +SP +GL++TF +L+
Sbjct: 1   MAIAFKSGVFF-LQSPKSQIGFRHSSPPDSSLSFKRFTPMASLSTSSPTLGLADTFTQLK 60

Query: 61  EQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSL 120
           +QGKVA IPYITAGDPDLSTTAEALKVL  CGSDIIELGVPYSDPLADGPVIQAAATRSL
Sbjct: 61  KQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPVIQAAATRSL 120

Query: 121 ARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPL 180
            R TN ++I+ ML  V+P++SCPISLFTYYNPILKRG+  FM  I+  GV+GLVVPDVPL
Sbjct: 121 ERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPL 180

Query: 181 EETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRV 240
           EETE+LRKEA+  +IELVLLTTPTTP +RMK I +ASEGF+YLVSS+GVTG R+SVSG+V
Sbjct: 181 EETEMLRKEALNNDIELVLLTTPTTPTERMKLIVDASEGFIYLVSSIGVTGARSSVSGKV 240

Query: 241 QTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKE 300
           Q+LL+++KE T KPVAVGFGISKPEHVKQ+A WGADG+I+GSAMVKLLG+A+SP EGLKE
Sbjct: 241 QSLLKDIKEATDKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGDAKSPTEGLKE 300

Query: 301 LENFTISLKSAL 312
           LE  T SLKSAL
Sbjct: 301 LEKLTKSLKSAL 311

[Close]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot
Match: P42390 (Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays OX=4577 GN=BX1 PE=1 SV=2)

HSP 1 Score: 318.2 bits (814), Expect = 1.1e-85
Identity = 164/296 (55.41%), Postives = 212/296 (71.62%), Query Frame = 0


Query: 16  IPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLREQGKVALIPYITAGDP 75
           +P+ P  +  P  +   Q+      AA A   +  +S+T   L  +GK A IPYITAGDP
Sbjct: 61  VPAAPPQAPAPAPVPPKQA------AAPAERRSRPVSDTMAALMAKGKTAFIPYITAGDP 120

Query: 76  DLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLARETNFNAIISMLKGV 135
           DL+TTAEAL++L  CG+D+IELGVP SDP  DGP+IQA+  R+LA  T  +A++ ML+ V
Sbjct: 121 DLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREV 180

Query: 136 IPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLEETEILRKEAVKYNIE 195
            PELSCP+ L +YY PI+ R +      +K+AGV GL+VPD+P      L  EA   N+E
Sbjct: 181 TPELSCPVVLLSYYKPIMSRSLAE----MKEAGVHGLIVPDLPYVAAHSLWSEAKNNNLE 240

Query: 196 LVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQTLLEEVKEVTKKPVA 255
           LVLLTTP  P+DRMK I +ASEGFVYLVS  GVTG R +V+ RV++L++EVK+VT KPVA
Sbjct: 241 LVLLTTPAIPEDRMKEITKASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTNKPVA 300

Query: 256 VGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKELENFTISLKSAL 312
           VGFGISKPEHVKQ+A WGADG+IIGSAMV+ LGEA SP++GL+ LE +   +K+AL
Sbjct: 301 VGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNAL 346

[Close]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot
Match: B8HPH2 (Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) OX=395961 GN=trpA PE=3 SV=1)

HSP 1 Score: 298.5 bits (763), Expect = 8.7e-80
Identity = 149/264 (56.44%), Postives = 194/264 (73.48%), Query Frame = 0


Query: 49  VGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADG 108
           V +S  F+ LR++ + ALIP+ITAGDP L  TA+AL+VL   G+D+IELGVPYSDPLADG
Sbjct: 2   VSVSTCFSALRDRAQCALIPFITAGDPSLEITAKALQVLDQQGADLIELGVPYSDPLADG 61

Query: 109 PVIQAAATRSLARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAG 168
           P IQAAATR+L + T  +A++ M+  V P L  P+ LFTYYNPI  RG+E F+  +  AG
Sbjct: 62  PTIQAAATRALQKGTRLDAVLEMISHVAPNLRSPLILFTYYNPIFHRGVEPFLQQVAQAG 121

Query: 169 VRGLVVPDVPLEETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGV 228
           V+GLVVPD+PLEE + +  +A    IEL LL  PTTP+ R+  IAE S+GF+YLVS+ GV
Sbjct: 122 VQGLVVPDLPLEEADTVLTQAAAVGIELTLLVAPTTPRSRIAAIAERSQGFIYLVSTTGV 181

Query: 229 TGTRTSVSGRVQTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLG 288
           TG R+ V GRV  LL E+++VT KP+ VGFGIS+PEH +QV +WGAD  I+GSA VK L 
Sbjct: 182 TGMRSKVEGRVHELLLELQQVTDKPIGVGFGISQPEHARQVMEWGADAAIVGSAFVKRLA 241

Query: 289 EAQSPEEGLKELENFTISLKSALS 313
           E  +PE+GL  + +F  SLK+AL+
Sbjct: 242 EG-TPEQGLAAIADFCRSLKTALT 264

[Close]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot
Match: B0C6F8 (Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) OX=329726 GN=trpA PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 1.9e-79
Identity = 148/261 (56.70%), Postives = 193/261 (73.95%), Query Frame = 0


Query: 51  LSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPV 110
           +S+ F +LR++G+ ALIP++TAGDPDL+TTA AL+ L   G+D+IELGVPYSDPLADGPV
Sbjct: 4   VSDCFAQLRDRGQCALIPFLTAGDPDLATTASALRQLDASGADLIELGVPYSDPLADGPV 63

Query: 111 IQAAATRSLARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVR 170
           IQAAATR+L R T  + ++ M+  + PE+  PI LFTYYNPI  RG+  F+  I  AGVR
Sbjct: 64  IQAAATRALQRGTRLDQVLEMVTELSPEIRAPIILFTYYNPIYHRGVAEFLQQIAKAGVR 123

Query: 171 GLVVPDVPLEETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTG 230
           GLVVPD+PLEE+E L ++A    IE+ LL  PT+ K+R++ IA  S+GF+YLVS+ GVTG
Sbjct: 124 GLVVPDLPLEESENLLQQAADLGIEVTLLVAPTSSKERIEKIALRSQGFIYLVSTTGVTG 183

Query: 231 TRTSVSGRVQTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEA 290
            RT V  RVQ L+ ++++VT KP+ VGFGIS+ EH +QV DWGAD  I+GSA V  L E 
Sbjct: 184 MRTKVENRVQDLIADLRQVTDKPIGVGFGISRTEHARQVMDWGADAAIVGSAFVNRLSEG 243

Query: 291 QSPEEGLKELENFTISLKSAL 312
            SP +GL  +  F  SLKS+L
Sbjct: 244 -SPSQGLSAISTFCRSLKSSL 263

[Close]

BLAST of Clc10G12560 vs. ExPASy TrEMBL
Match: A0A5D3E2H9 (Tryptophan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G00080 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 7.0e-157
Identity = 291/312 (93.27%), Postives = 300/312 (96.15%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFK SR LPLNKIP+T  FS RPCKISVSQ+KRFAPMAALAA P VGLSETF KLRE
Sbjct: 1   MDIAFKPSRILPLNKIPNTLIFSPRPCKISVSQTKRFAPMAALAAYPVVGLSETFKKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRG+ENFMMIIKD GVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMK I EASEGFVYLVSS+GVTGTRTSVSGRVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKKIVEASEGFVYLVSSIGVTGTRTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTKSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. ExPASy TrEMBL
Match: A0A1S3CNL8 (Tryptophan synthase OS=Cucumis melo OX=3656 GN=LOC103502969 PE=3 SV=1)

HSP 1 Score: 563.1 bits (1450), Expect = 7.0e-157
Identity = 291/312 (93.27%), Postives = 300/312 (96.15%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFK SR LPLNKIP+T  FS RPCKISVSQ+KRFAPMAALAA P VGLSETF KLRE
Sbjct: 1   MDIAFKPSRILPLNKIPNTLIFSPRPCKISVSQTKRFAPMAALAAYPVVGLSETFKKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRG+ENFMMIIKD GVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMK I EASEGFVYLVSS+GVTGTRTSVSGRVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKKIVEASEGFVYLVSSIGVTGTRTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTKSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. ExPASy TrEMBL
Match: A0A0A0LD81 (Tryptophan synthase OS=Cucumis sativus OX=3659 GN=Csa_3G843770 PE=3 SV=1)

HSP 1 Score: 557.4 bits (1435), Expect = 3.9e-155
Identity = 290/312 (92.95%), Postives = 298/312 (95.51%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFKSSR LPLNKIP+T  FS RPCKISVSQSKRFAPMAALAA P VGLSETF  LRE
Sbjct: 1   MDIAFKSSRILPLNKIPNTLIFSPRPCKISVSQSKRFAPMAALAAYPVVGLSETFKNLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLS CGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSKCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELS PISLFTYYNPILKRG+ENFMMIIKD GVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSRPISLFTYYNPILKRGVENFMMIIKDTGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMKNI EASEGFVYLVSS+GVTGTRTSVS RVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKNIVEASEGFVYLVSSIGVTGTRTSVSSRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTRSLKSALS 312

[Close]

BLAST of Clc10G12560 vs. ExPASy TrEMBL
Match: A0A6J1EXE2 (Tryptophan synthase OS=Cucurbita moschata OX=3662 GN=LOC111439260 PE=3 SV=1)

HSP 1 Score: 552.0 bits (1421), Expect = 1.6e-153
Identity = 283/312 (90.71%), Postives = 297/312 (95.19%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFKSSRFLPLNKIP+T   S RPC ISV QSKRFAP+AAL ASPA GLSETFNKLRE
Sbjct: 1   MDIAFKSSRFLPLNKIPTTRIVSPRPCTISVFQSKRFAPIAALTASPAAGLSETFNKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATR+LA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRALA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCP+SLF+YYNPILKRGIENFMM I+DAGVRGLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPVSLFSYYNPILKRGIENFMMTIRDAGVRGLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ET +LR+EAVKYNIELVLLTTPTTPKDRMKNI EASEGFVYLVSSVGVTG RTSVSGRVQ
Sbjct: 181 ETAVLREEAVKYNIELVLLTTPTTPKDRMKNIVEASEGFVYLVSSVGVTGARTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           +LLEE+KEVT+KPVAVGFGISKPEHVKQVA WGADG+I+GSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 SLLEEIKEVTEKPVAVGFGISKPEHVKQVAGWGADGVIVGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           E FT SL+SALS
Sbjct: 301 ETFTKSLRSALS 312

[Close]

BLAST of Clc10G12560 vs. ExPASy TrEMBL
Match: A0A1S4E560 (Tryptophan synthase OS=Cucumis melo OX=3656 GN=LOC103502969 PE=3 SV=1)

HSP 1 Score: 551.6 bits (1420), Expect = 2.1e-153
Identity = 288/312 (92.31%), Postives = 297/312 (95.19%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALAASPAVGLSETFNKLRE 60
           MDIAFK SR LPLNKIP+T  FS RPCKISVSQ+KRFAPMAALAA P VGLSETF KLRE
Sbjct: 1   MDIAFKPSRILPLNKIPNTLIFSPRPCKISVSQTKRFAPMAALAAYPVVGLSETFKKLRE 60

Query: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120
           QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA
Sbjct: 61  QGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSLA 120

Query: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPLE 180
           RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRG+ENFMMIIKD    GLVVPDVPLE
Sbjct: 121 RETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGVENFMMIIKDT---GLVVPDVPLE 180

Query: 181 ETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRVQ 240
           ETE+LRKEAVK+NIELVLLTTPTTPK+RMK I EASEGFVYLVSS+GVTGTRTSVSGRVQ
Sbjct: 181 ETEVLRKEAVKHNIELVLLTTPTTPKERMKKIVEASEGFVYLVSSIGVTGTRTSVSGRVQ 240

Query: 241 TLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300
           TLLEEVKEVT+KPVAVGFGISKPEHVKQVA+WGADGIIIGSAMVKLLGEAQSPEEGLKEL
Sbjct: 241 TLLEEVKEVTEKPVAVGFGISKPEHVKQVAEWGADGIIIGSAMVKLLGEAQSPEEGLKEL 300

Query: 301 ENFTISLKSALS 313
           ENFT SLKSALS
Sbjct: 301 ENFTKSLKSALS 309

[Close]

BLAST of Clc10G12560 vs. TAIR 10
Match: AT4G02610.1 (Aldolase-type TIM barrel family protein )

HSP 1 Score: 423.3 bits (1087), Expect = 1.7e-118
Identity = 211/266 (79.32%), Postives = 241/266 (90.60%), Query Frame = 0


Query: 46  SPAVGLSETFNKLREQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPL 105
           S  VGLSETF +L+ QGKVALIPYITAGDPDLSTTA+ALKVL +CGSDIIELGVPYSDPL
Sbjct: 8   SSTVGLSETFARLKSQGKVALIPYITAGDPDLSTTAKALKVLDSCGSDIIELGVPYSDPL 67

Query: 106 ADGPVIQAAATRSLARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIK 165
           ADGP IQAAA RSL + TNFN+IISMLK VIP+LSCPI+LFTYYNPIL+RG+EN+M +IK
Sbjct: 68  ADGPAIQAAARRSLLKGTNFNSIISMLKEVIPQLSCPIALFTYYNPILRRGVENYMTVIK 127

Query: 166 DAGVRGLVVPDVPLEETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSS 225
           +AGV GL+VPDVPLEETE LR EA K+ IELVLLTTPTTPK+RM  I EASEGF+YLVSS
Sbjct: 128 NAGVHGLLVPDVPLEETETLRNEARKHQIELVLLTTPTTPKERMNAIVEASEGFIYLVSS 187

Query: 226 VGVTGTRTSVSGRVQTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVK 285
           VGVTGTR SV+ +VQ+LL+++KE T KPVAVGFGISKPEHVKQVA+WGADG+I+GSAMVK
Sbjct: 188 VGVTGTRESVNEKVQSLLQQIKEATSKPVAVGFGISKPEHVKQVAEWGADGVIVGSAMVK 247

Query: 286 LLGEAQSPEEGLKELENFTISLKSAL 312
           +LGE++SPE+GLKELE FT SLKSAL
Sbjct: 248 ILGESESPEQGLKELEFFTKSLKSAL 273

[Close]

BLAST of Clc10G12560 vs. TAIR 10
Match: AT3G54640.1 (tryptophan synthase alpha chain )

HSP 1 Score: 422.2 bits (1084), Expect = 3.7e-118
Identity = 221/312 (70.83%), Postives = 257/312 (82.37%), Query Frame = 0


Query: 1   MDIAFKSSRFLPLNKIPSTPAFSSRPCKISVSQSKRFAPMAALA-ASPAVGLSETFNKLR 60
           M IAFKS  F  L    S   F       S    KRF PMA+L+ +SP +GL++TF +L+
Sbjct: 1   MAIAFKSGVFF-LQSPKSQIGFRHSSPPDSSLSFKRFTPMASLSTSSPTLGLADTFTQLK 60

Query: 61  EQGKVALIPYITAGDPDLSTTAEALKVLSTCGSDIIELGVPYSDPLADGPVIQAAATRSL 120
           +QGKVA IPYITAGDPDLSTTAEALKVL  CGSDIIELGVPYSDPLADGPVIQAAATRSL
Sbjct: 61  KQGKVAFIPYITAGDPDLSTTAEALKVLDACGSDIIELGVPYSDPLADGPVIQAAATRSL 120

Query: 121 ARETNFNAIISMLKGVIPELSCPISLFTYYNPILKRGIENFMMIIKDAGVRGLVVPDVPL 180
            R TN ++I+ ML  V+P++SCPISLFTYYNPILKRG+  FM  I+  GV+GLVVPDVPL
Sbjct: 121 ERGTNLDSILEMLDKVVPQISCPISLFTYYNPILKRGLGKFMSSIRAVGVQGLVVPDVPL 180

Query: 181 EETEILRKEAVKYNIELVLLTTPTTPKDRMKNIAEASEGFVYLVSSVGVTGTRTSVSGRV 240
           EETE+LRKEA+  +IELVLLTTPTTP +RMK I +ASEGF+YLVSS+GVTG R+SVSG+V
Sbjct: 181 EETEMLRKEALNNDIELVLLTTPTTPTERMKLIVDASEGFIYLVSSIGVTGARSSVSGKV 240

Query: 241 QTLLEEVKEVTKKPVAVGFGISKPEHVKQVADWGADGIIIGSAMVKLLGEAQSPEEGLKE 300
           Q+LL+++KE T KPVAVGFGISKPEHVKQ+A WGADG+I+GSAMVKLLG+A+SP EGLKE
Sbjct: 241 QSLLKDIKEATDKPVAVGFGISKPEHVKQIAGWGADGVIVGSAMVKLLGDAKSPTEGLKE 300

Query: 301 LENFTISLKSAL 312
           LE  T SLKSAL
Sbjct: 301 LEKLTKSLKSAL 311

The following BLAST results are available for this feature:

BLAST of Clc10G12560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038906368.1	1.0e-157	95.19	tryptophan synthase alpha chain-like [Benincasa hispida]	[more]
XP_008465320.1	1.5e-156	93.27	PREDICTED: tryptophan synthase alpha chain-like isoform X1 [Cucumis melo] >KAA00...	[more]
XP_004141207.1	8.0e-155	92.95	tryptophan synthase alpha chain [Cucumis sativus] >KGN59758.1 hypothetical prote...	[more]
XP_022932801.1	3.3e-153	90.71	tryptophan synthase alpha chain-like [Cucurbita moschata]	[more]
XP_023528646.1	4.4e-153	90.71	tryptophan synthase alpha chain-like [Cucurbita pepo subsp. pepo] >XP_023528647....	[more]

BLAST of Clc10G12560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O22765	2.4e-117	79.32	Tryptophan synthase alpha chain OS=Arabidopsis thaliana OX=3702 GN=TRPA1 PE=1 SV...	[more]
Q42529	5.2e-117	70.83	Tryptophan synthase alpha chain, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
P42390	1.1e-85	55.41	Indole-3-glycerol phosphate lyase, chloroplastic OS=Zea mays OX=4577 GN=BX1 PE=1...	[more]
B8HPH2	8.7e-80	56.44	Tryptophan synthase alpha chain OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141)...	[more]
B0C6F8	1.9e-79	56.70	Tryptophan synthase alpha chain OS=Acaryochloris marina (strain MBIC 11017) OX=3...	[more]

BLAST of Clc10G12560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3E2H9	7.0e-157	93.27	Tryptophan synthase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold734G...	[more]
A0A1S3CNL8	7.0e-157	93.27	Tryptophan synthase OS=Cucumis melo OX=3656 GN=LOC103502969 PE=3 SV=1	[more]
A0A0A0LD81	3.9e-155	92.95	Tryptophan synthase OS=Cucumis sativus OX=3659 GN=Csa_3G843770 PE=3 SV=1	[more]
A0A6J1EXE2	1.6e-153	90.71	Tryptophan synthase OS=Cucurbita moschata OX=3662 GN=LOC111439260 PE=3 SV=1	[more]
A0A1S4E560	2.1e-153	92.31	Tryptophan synthase OS=Cucumis melo OX=3656 GN=LOC103502969 PE=3 SV=1	[more]

BLAST of Clc10G12560 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02610.1	1.7e-118	79.32	Aldolase-type TIM barrel family protein	[more]
AT3G54640.1	3.7e-118	70.83	tryptophan synthase alpha chain	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013785	Aldolase-type TIM barrel	GENE3D	3.20.20.70	Aldolase class I	coord: 50..312 e-value: 3.2E-109 score: 365.9
IPR002028	Tryptophan synthase, alpha chain	PFAM	PF00290	Trp_syntA	coord: 55..310 e-value: 1.0E-92 score: 309.7
IPR002028	Tryptophan synthase, alpha chain	TIGRFAM	TIGR00262	TIGR00262	coord: 55..308 e-value: 3.5E-92 score: 305.9
IPR002028	Tryptophan synthase, alpha chain	PANTHER	PTHR43406	TRYPTOPHAN SYNTHASE, ALPHA CHAIN	coord: 46..311
IPR002028	Tryptophan synthase, alpha chain	HAMAP	MF_00131	Trp_synth_alpha	coord: 61..310 score: 35.980568
IPR002028	Tryptophan synthase, alpha chain	CDD	cd04724	Tryptophan_synthase_alpha	coord: 65..308 e-value: 7.05801E-114 score: 327.126
None	No IPR available	PANTHER	PTHR43406:SF6	TRYPTOPHAN SYNTHASE ALPHA CHAIN	coord: 46..311
IPR018204	Tryptophan synthase, alpha chain, active site	PROSITE	PS00167	TRP_SYNTHASE_ALPHA	coord: 95..108
IPR011060	Ribulose-phosphate binding barrel	SUPERFAMILY	51366	Ribulose-phoshate binding barrel	coord: 51..292

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G12560.1	Clc10G12560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000162	tryptophan biosynthetic process
biological_process	GO:0006568	tryptophan metabolic process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0005829	cytosol
cellular_component	GO:0005634	nucleus
molecular_function	GO:0004834	tryptophan synthase activity
molecular_function	GO:0003824	catalytic activity