Clc10G12120 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G12120
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Phytocyanin domain-containing protein
Location	ClcChr10: 25541157 .. 25543504 (-)
RNA-Seq Expression	Clc10G12120
Synteny	Clc10G12120

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGGCTTCACATGGTTACAGTTGGCAGGCAAATTTCTAAACAACAAACCAACACATAATTGCGCCAAAAAAACGAAGCTTTCAAAAAGATTTCGAACCCCACAAAAGCTCCATCAAGTTTCCCTCAACAGATCTCATCTCACCCCATTTATTGATAAACAATGGAGTCTCTCCCACTGGGCCCTTCAACATCATGTCTTCTCTCTCCAACACCCATTGGATATCAACAACCAAATCTGCTTCCCCTTCTTCCACTCTAATCTAGGGCTGAATTCGAACCTTCCTCTCACAATGCCGGCCTCGCCGCATCTCATTGCCTTCTTCCTCCTCCTCTGCGCCGCCGTCACGCTCTTCCCCGTCTCCGCCACCGACCACATTGTCGGCGCCAACCGCGGCTGGAACCCCGGCATCAACTACACTCTCTGGGCTAATAATCACACCTTCTACGTTGGCGATTTCATCTGTAAGTTATAAATCCTCTTTCTCTCTCTCTCTCTACACTAAAGTTTTGTATGGATCTTTCCAGAGGGGAAGTTTTAGAAGCTTTTTATTTGTGTTCTAATCTTTTGAATTCAATGAAAAGCATGAATCACGTGTTATTCCCATTTTGAGAGATCAAACGTTCGAATTCTCATCCTTAGTTACAATGTTGTATTCTTGGAAGATAAAGGAGTAGCCCAATGAGCAATTGTCAACTCCTTCCTTTCTCTGCCCTACCCTAGTAAGTTAATGTAAATAATAAATGACTTAGAAAGAACAACGAACGAAATTATCTCTTGTAGTCACTTGTTTAAGGTTTAGGCAGTAGTGTGGACTCTTGACTAACCAGCAAAATTGAAGGCAAAAATTGAAGGTAGTAGAGTTAAATAGTTTTCTCTTGAGAATAATAGTGGTGTCAATAAGTTGACGGATATTACGGATATTACTTGATATTAGTAGTTTTGTTGCATTGCAAAGTCGAAGGTAGCAGAGTCAAATAGTTGTCTCTTGAGAATAATAATGGTGCGGACAAGTTGACTAAAATACTCACAGACTTTACTTGGTAACTGTAGGTGTAACTTTGTTGCATTGCAAATGGTTATTGATAGGGAGAAAGTTAGAAAAGATAAAAGTTATGTATAATTTTTGGAAGTTAGTTTAGAGTGGATTTGCGGTGGTAACTAGAAAGACAGCTCTCCACTAAACTATAGTGTAATATAGGGGTGATCATCGGTCGACCAGCGTCGTTTCTTGGCTCAAACTGATGCTGACCATCGATACTTAAATGTCCATCGGTTTTGACGAAGATGGTAACGTCAACCGACCAACTGCTCAGTCGGTTGGCCGACTTTTATGTTTCATGTCTCCGACGAGCAAGCTGGAAAAAAAAAATGGAGGAGAGATCAAAAGCTAAAAAAGTAGCAAAAGCGATGTTTTCGTTCCATGCTCGATCGGTTTGAGCCTCTTTGGGCAAATCGGCCGGCCAACCTCCAACCAAAGTATGTATAAATCCGGCCACCGAAGTTGGTTTGGTCGGTTTTAGTTGGCGGGCTCGATTTTCTGTTCTTCCTTTCTCACCCTGGTGTAATGTCCCTTTTGATATTGAAGTATAGTTAGTGATAAATTATCCTAAGTCCTAACGCCTTGCTACGGAACCAAATATTTGGCAGCATTTAGGTATCAGAAGAACCAATACAACGTGTTTGAGGTGAACCAATCAGGATACGACAACTGCACCACAGACGGGGCGTTAGGGAATTGGAGCGGTGGCAAGGACTTCATCCCTCTCAACAAGGCTCAGAGGTACTACTTCATTTGTGGCAATGGACAGTGTTTTAATGGAATGAAGGTGACCATTCTTGTTCATCCTCTTCCTCCTCCATCTTCTCCCCTCGCCACCGAGCATCCTTCGCCCTCCTCCGCCACAGCCCGGGCGGGTTCTCGACAGTGGCGGATTCGTGCTCTGCTCATCTCTCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAGTTTAGCCATGGCTGGGCTACGCAGAGGTCTTTGTTGGTAAATTAAACTAGTTTTAGTGTTGGAATTGTTCTTTCCTTCTTTGAGATCTCTAGATTTGGTAACAGTTTGGCTGGCTAACTTGTGAGGGAACATTGTTTGATTGTTTTCAAATTTGTGGGCTGGTTTTGAATGTTTGTTTTGTTCTAATTTGTAATGACGTTGTGACAAATCACATCCAGGTTTAAATTCCTCCCAGTTGGCCCCCAAAATCGTGGGAGAATCAGCATTTGCATACTTATTCAACAAAACATGAGATACTAATACCATTTATTGTCGTTTTTGGATAATTACATTATATAAACCTTCTGTCCATTTTTTTT

mRNA sequence

CAGGCTTCACATGGTTACAGTTGGCAGGCAAATTTCTAAACAACAAACCAACACATAATTGCGCCAAAAAAACGAAGCTTTCAAAAAGATTTCGAACCCCACAAAAGCTCCATCAAGTTTCCCTCAACAGATCTCATCTCACCCCATTTATTGATAAACAATGGAGTCTCTCCCACTGGGCCCTTCAACATCATGTCTTCTCTCTCCAACACCCATTGGATATCAACAACCAAATCTGCTTCCCCTTCTTCCACTCTAATCTAGGGCTGAATTCGAACCTTCCTCTCACAATGCCGGCCTCGCCGCATCTCATTGCCTTCTTCCTCCTCCTCTGCGCCGCCGTCACGCTCTTCCCCGTCTCCGCCACCGACCACATTGTCGGCGCCAACCGCGGCTGGAACCCCGGCATCAACTACACTCTCTGGGCTAATAATCACACCTTCTACGTTGGCGATTTCATCTCATTTAGGTATCAGAAGAACCAATACAACGTGTTTGAGGTGAACCAATCAGGATACGACAACTGCACCACAGACGGGGCGTTAGGGAATTGGAGCGGTGGCAAGGACTTCATCCCTCTCAACAAGGCTCAGAGGTACTACTTCATTTGTGGCAATGGACAGTGTTTTAATGGAATGAAGGTGACCATTCTTGTTCATCCTCTTCCTCCTCCATCTTCTCCCCTCGCCACCGAGCATCCTTCGCCCTCCTCCGCCACAGCCCGGGCGGGTTCTCGACAGTGGCGGATTCGTGCTCTGCTCATCTCTCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAGTTTAGCCATGGCTGGGCTACGCAGAGGTCTTTGTTGGTAAATTAAACTAGTTTTAGTGTTGGAATTGTTCTTTCCTTCTTTGAGATCTCTAGATTTGGTAACAGTTTGGCTGGCTAACTTGTGAGGGAACATTGTTTGATTGTTTTCAAATTTGTGGGCTGGTTTTGAATGTTTGTTTTGTTCTAATTTGTAATGACGTTGTGACAAATCACATCCAGGTTTAAATTCCTCCCAGTTGGCCCCCAAAATCGTGGGAGAATCAGCATTTGCATACTTATTCAACAAAACATGAGATACTAATACCATTTATTGTCGTTTTTGGATAATTACATTATATAAACCTTCTGTCCATTTTTTTT

Coding sequence (CDS)

ATGCCGGCCTCGCCGCATCTCATTGCCTTCTTCCTCCTCCTCTGCGCCGCCGTCACGCTCTTCCCCGTCTCCGCCACCGACCACATTGTCGGCGCCAACCGCGGCTGGAACCCCGGCATCAACTACACTCTCTGGGCTAATAATCACACCTTCTACGTTGGCGATTTCATCTCATTTAGGTATCAGAAGAACCAATACAACGTGTTTGAGGTGAACCAATCAGGATACGACAACTGCACCACAGACGGGGCGTTAGGGAATTGGAGCGGTGGCAAGGACTTCATCCCTCTCAACAAGGCTCAGAGGTACTACTTCATTTGTGGCAATGGACAGTGTTTTAATGGAATGAAGGTGACCATTCTTGTTCATCCTCTTCCTCCTCCATCTTCTCCCCTCGCCACCGAGCATCCTTCGCCCTCCTCCGCCACAGCCCGGGCGGGTTCTCGACAGTGGCGGATTCGTGCTCTGCTCATCTCTCTGGCTTTGATTTGGTTTGGATCTGACTGGATTTAG

Protein sequence

MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHPLPPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI

Homology

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BLAST of Clc10G12120 vs. NCBI nr
Match: XP_038903873.1 (lamin-like protein [Benincasa hispida])

HSP 1 Score: 329.7 bits (844), Expect = 1.5e-86
Identity = 155/169 (91.72%), Postives = 161/169 (95.27%), Query Frame = 0


Query: 3   ASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQ 62
           ASPHL+AFFLLLCAAV++FPVSATDHIVGANRGWNPGINYTLWANNHTFYVGD ISFRYQ
Sbjct: 4   ASPHLLAFFLLLCAAVSVFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRYQ 63

Query: 63  KNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTILV 122
           KNQYNVFEVNQSGYDNCTT+GALGNWS GKDFIPL KAQRYYFICGNGQCFNGMKVT+LV
Sbjct: 64  KNQYNVFEVNQSGYDNCTTEGALGNWSSGKDFIPLQKAQRYYFICGNGQCFNGMKVTVLV 123

Query: 123 HPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           HPL PPPSSPL TEH SPSSATA  GS+QWRIRALLISLALIWFGSDWI
Sbjct: 124 HPLPPPPSSPLGTEHSSPSSATAPEGSQQWRIRALLISLALIWFGSDWI 172

[Close]

BLAST of Clc10G12120 vs. NCBI nr
Match: XP_023526524.1 (lamin-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 326.6 bits (836), Expect = 1.2e-85
Identity = 152/171 (88.89%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPASPHL+AFFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASPHLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA++  SPSSAT R GSRQW+IRALL+SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKDSSPSSATPRTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. NCBI nr
Match: KAG7018121.1 (Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 323.9 bits (829), Expect = 8.1e-85
Identity = 151/171 (88.30%), Postives = 160/171 (93.57%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPASP L+AFFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASPQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA++  SPSSAT R GSRQW+IRALL+SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKDSSPSSATPRTGSRQWKIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. NCBI nr
Match: XP_022934432.1 (lamin-like protein [Cucurbita moschata])

HSP 1 Score: 322.0 bits (824), Expect = 3.1e-84
Identity = 150/171 (87.72%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPASP L+AFFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASPQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA++  SPSSAT R GSRQW+IRAL +SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKDSSPSSATPRTGSRQWQIRALFVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. NCBI nr
Match: KAG6581622.1 (Lamin-like protein, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 320.5 bits (820), Expect = 8.9e-84
Identity = 150/171 (87.72%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPASP L+AFFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASPQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA++  SPSSAT   GSRQW+IRALL+SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKDSSPSSATPWTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot
Match: Q39131 (Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1)

HSP 1 Score: 117.5 bits (293), Expect = 1.5e-25
Identity = 57/160 (35.62%), Postives = 90/160 (56.25%), Query Frame = 0


Query: 7   LIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQY 66
           + A  L    A  +  V+A  + VG N+ WNP INYT+WA    FY+GD++ F + +NQ+
Sbjct: 8   ITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQH 67

Query: 67  NVFEVNQSGYDNCTTDGALGNWS--GGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 126
           N+ EVN++ Y+ C  D  + NW+   G+D + LN+ + YY + G G C+ GMK+++ V  
Sbjct: 68  NILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEK 127

Query: 127 LPPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIW 165
           LPPP  P +    +  S +   G  Q+ I   L +   +W
Sbjct: 128 LPPP--PKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot
Match: Q41001 (Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 1.1e-15
Identity = 61/184 (33.15%), Postives = 88/184 (47.83%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           M  S  L+  FLL    + L P  AT + VG   GW  G +Y+ WA++ TF VGD + F 
Sbjct: 1   MAFSNALVLCFLLAIINMAL-PSLATVYTVGDTSGWVIGGDYSTWASDKTFAVGDSLVFN 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICG-NGQCFNGMKVT 120
           Y    + V EV +S Y +CT+  ++   S G   IPL KA ++YFICG  G    GMK++
Sbjct: 61  YGAGAHTVDEVKESDYKSCTSGNSISTDSTGATTIPLKKAGKHYFICGVPGHSTGGMKLS 120

Query: 121 ILVH--------PLPPPS-----SPLATEHPSPSSATARAGSRQWRIRALLISLALIWFG 171
           I V         P   PS     SP + + P+ ++ T     +       L  +  ++F 
Sbjct: 121 IKVKASSGSSAAPSATPSSSGKGSPSSDDTPAATTTTTTPTKQNESSATSLSPIVALFFT 180

[Close]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot
Match: A0A072U307 (Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 2.0e-14
Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = 0


Query: 3   ASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQ 62
           AS  ++    +    ++   ++ATD+IVG ++GW    +YT WA +  F VGD + F Y 
Sbjct: 2   ASSRVVLILSISMVLLSSVAIAATDYIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYD 61

Query: 63  KNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNG----MKV 122
            +++NVF+VN + + +CT        S GKD I L    R +++CG     +     + +
Sbjct: 62  PSRHNVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVI 121

Query: 123 TILVHPLPPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIW 165
           T+L    P PS P     PS S A +   S    + A+++++A+I+
Sbjct: 122 TVLAEGAPAPSPP-----PS-SDAHSVVSSLFGVVMAIMVAIAVIF 161

[Close]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot
Match: A0A0M4FTF3 (Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.5e-14
Identity = 41/122 (33.61%), Postives = 63/122 (51.64%), Query Frame = 0


Query: 22  PVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQYNVFEVNQSGYDNCTT 81
           P   T++ VG ++GW   ++Y  WA   TF VGD + F+Y K  +NVF+VNQ+G+ NC  
Sbjct: 112 PAPQTEYWVGDDKGWTIDVDYQAWAKGKTFKVGDTLVFKYTKGHHNVFKVNQTGFQNCIA 171

Query: 82  DGALGNWSGGKDFIPLNKAQRYYFICG-NGQCF-NGMKVTILVHPLPPPSSPLATEHPSP 141
                  + G D I L    + ++ICG    C  +  K+ I V   P  + P+    P+P
Sbjct: 172 PPPSEGLTSGHDVITLAAPGKKWYICGFPTHCSEHKQKLAITVEGAPAQTPPVWAPAPAP 231

[Close]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot
Match: G7L0H3 (Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.9e-14
Identity = 51/162 (31.48%), Postives = 86/162 (53.09%), Query Frame = 0


Query: 7   LIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQY 66
           +++  ++L ++V +    ATDHIVG ++GW    +YT WA +  F VGD + F Y   ++
Sbjct: 9   ILSISMVLLSSVAI----ATDHIVGDDKGWTVDFDYTQWAQDKVFRVGDNLVFNYDPARH 68

Query: 67  NVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNG----MKVTILV 126
           NVF+VN + + +CT        S GKD I L    R +++CG     +     + +T+L 
Sbjct: 69  NVFKVNGTLFQSCTFPPKNEALSTGKDIIQLKTEGRKWYVCGVADHCSARQMKLVITVLA 128

Query: 127 HPLPPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIW 165
              P PS P     PS S A +   S    + A+++++A+I+
Sbjct: 129 EGAPAPSPP-----PS-SDAHSVVSSLFGVVMAIMVAIAVIF 160

[Close]

BLAST of Clc10G12120 vs. ExPASy TrEMBL
Match: A0A6J1F2R0 (lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441613 PE=4 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 1.5e-84
Identity = 150/171 (87.72%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPASP L+AFFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASPQLLAFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA++  SPSSAT R GSRQW+IRAL +SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKDSSPSSATPRTGSRQWQIRALFVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. ExPASy TrEMBL
Match: A0A6J1J7T1 (lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482049 PE=4 SV=1)

HSP 1 Score: 318.5 bits (815), Expect = 1.6e-83
Identity = 149/171 (87.13%), Postives = 159/171 (92.98%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           MPAS  L+ FFLLLC A ++FPVSATDHIVGANRGWNPGINYTLWANNHTF+VGD ISFR
Sbjct: 1   MPASLQLLPFFLLLCTAASVFPVSATDHIVGANRGWNPGINYTLWANNHTFFVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQSGYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQSGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA+++ SPSSAT R GSRQW+IRALL+SLALIWFGSDWI
Sbjct: 121 LVHPLPPPPSSPLASKNSSPSSATPRTGSRQWQIRALLVSLALIWFGSDWI 171

[Close]

BLAST of Clc10G12120 vs. ExPASy TrEMBL
Match: A0A1S3CN34 (lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103502815 PE=4 SV=1)

HSP 1 Score: 316.2 bits (809), Expect = 8.1e-83
Identity = 151/171 (88.30%), Postives = 157/171 (91.81%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           M ASPHL+ FFLLLCAAV+LFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGD ISFR
Sbjct: 1   MLASPHLLPFFLLLCAAVSLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQ+GYDNCTT+GA GNWS GKDFIPLNKAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQTGYDNCTTEGAFGNWSSGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLATEH SPSSAT   GS+QW  RALLISLA+I FGS WI
Sbjct: 121 LVHPLPPPPSSPLATEHHSPSSATPCVGSQQWGFRALLISLAMILFGSHWI 171

[Close]

BLAST of Clc10G12120 vs. ExPASy TrEMBL
Match: A0A0A0LCI9 (Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G710810 PE=4 SV=1)

HSP 1 Score: 303.5 bits (776), Expect = 5.5e-79
Identity = 146/171 (85.38%), Postives = 152/171 (88.89%), Query Frame = 0


Query: 1   MPASPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFR 60
           M  SP L+ FFLLLCAAV+LFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGD ISFR
Sbjct: 1   MLTSPRLLPFFLLLCAAVSLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFR 60

Query: 61  YQKNQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTI 120
           YQKNQYNVFEVNQ+GYDNCT +GA GNWS GKDFIPL+KAQRYYFICGNGQCFNGMKVTI
Sbjct: 61  YQKNQYNVFEVNQTGYDNCTIEGASGNWSSGKDFIPLDKAQRYYFICGNGQCFNGMKVTI 120

Query: 121 LVHPL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           LVHPL PPPSSPLA EH SPSSAT   GSRQW  RALLISLA+I  GS WI
Sbjct: 121 LVHPLPPPPSSPLAMEHNSPSSATPWVGSRQWGFRALLISLAMILLGSHWI 171

[Close]

BLAST of Clc10G12120 vs. ExPASy TrEMBL
Match: A0A6J1DHI7 (lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111020966 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 4.2e-71
Identity = 135/168 (80.36%), Postives = 146/168 (86.90%), Query Frame = 0


Query: 4   SPHLIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQK 63
           SPHL   FL+L AA  +  VSATDHIVGANRGWNPGINYTLWANNHTF+VGDFISFRYQK
Sbjct: 6   SPHLAFSFLILAAAAAV--VSATDHIVGANRGWNPGINYTLWANNHTFFVGDFISFRYQK 65

Query: 64  NQYNVFEVNQSGYDNCTTDGALGNWSGGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVH 123
            QYNVFEVNQSGY NCTT+GA GNWS GKDFI L +A+RYYFICGNGQC+NGMKVTILVH
Sbjct: 66  IQYNVFEVNQSGYGNCTTEGAFGNWSSGKDFILLKEAKRYYFICGNGQCYNGMKVTILVH 125

Query: 124 PL-PPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIWFGSDWI 171
           PL PPPSSPLA +H SPSSA AR GS   RI+ALL+SLALIWFGS+WI
Sbjct: 126 PLPPPPSSPLAAKHSSPSSAPARLGSWPTRIQALLVSLALIWFGSEWI 171

[Close]

BLAST of Clc10G12120 vs. TAIR 10
Match: AT5G15350.1 (early nodulin-like protein 17 )

HSP 1 Score: 117.5 bits (293), Expect = 1.1e-26
Identity = 57/160 (35.62%), Postives = 90/160 (56.25%), Query Frame = 0


Query: 7   LIAFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQY 66
           + A  L    A  +  V+A  + VG N+ WNP INYT+WA    FY+GD++ F + +NQ+
Sbjct: 8   ITAVVLAFLMAAPMPGVTAKKYTVGENKFWNPNINYTIWAQGKHFYLGDWLYFVFDRNQH 67

Query: 67  NVFEVNQSGYDNCTTDGALGNWS--GGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHP 126
           N+ EVN++ Y+ C  D  + NW+   G+D + LN+ + YY + G G C+ GMK+++ V  
Sbjct: 68  NILEVNKTDYEGCIADHPIRNWTRGAGRDIVTLNQTKHYYLLDGKGGCYGGMKLSVKVEK 127

Query: 127 LPPPSSPLATEHPSPSSATARAGSRQWRIRALLISLALIW 165
           LPPP  P +    +  S +   G  Q+ I   L +   +W
Sbjct: 128 LPPP--PKSAPVKNIGSVSMVTGLAQFMIPVSLFAFPAMW 165

[Close]

BLAST of Clc10G12120 vs. TAIR 10
Match: AT3G01070.1 (early nodulin-like protein 16 )

HSP 1 Score: 114.8 bits (286), Expect = 6.9e-26
Identity = 55/125 (44.00%), Postives = 79/125 (63.20%), Query Frame = 0


Query: 12  LLLCAAVTLFPVSATD-----HIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQY 71
           +L+  AV  F ++AT+       VG N+ WNP INYT+WA +  FY+ D++ F Y++NQY
Sbjct: 6   VLVAGAVLAFLLAATNVTAKRWTVGDNKFWNPNINYTIWAQDKHFYLDDWLYFVYERNQY 65

Query: 72  NVFEVNQSGYDNCTTDGALGNWS--GGKDFIPLNKAQRYYFICGN-GQCFNGMKVTILVH 129
           NV EVN++ Y +C  +  + NWS   G+D + LN  + YY I GN G C+ GMK+ +LV 
Sbjct: 66  NVIEVNETNYISCNPNNPIANWSRGAGRDLVHLNVTRHYYLISGNGGGCYGGMKLAVLVE 125

[Close]

BLAST of Clc10G12120 vs. TAIR 10
Match: AT4G12880.1 (early nodulin-like protein 19 )

HSP 1 Score: 109.0 bits (271), Expect = 3.8e-24
Identity = 51/127 (40.16%), Postives = 79/127 (62.20%), Query Frame = 0


Query: 9   AFFLLLCAAVTLFPVSATDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQYNV 68
           A  L    A  +  V+A  ++VG  + WNP INYTLWA    FYVGD++ F + ++Q+N+
Sbjct: 10  AVVLAFLVAAPIPEVTAKKYLVGDKKFWNPNINYTLWAQGKHFYVGDWLYFVFYRDQHNI 69

Query: 69  FEVNQSGYDNCTTDGALGNWS--GGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVH--P 128
            EVN++ Y+ C ++  + N++   G+D +PL + +RYY + G G C  GMK+ +LV   P
Sbjct: 70  LEVNKADYEKCISNRPIRNYTRGAGRDIVPLYETRRYYLLDGRGGCVQGMKLDVLVETPP 129

Query: 129 LPPPSSP 132
            PPP +P
Sbjct: 130 PPPPFTP 136

[Close]

BLAST of Clc10G12120 vs. TAIR 10
Match: AT2G27035.1 (early nodulin-like protein 20 )

HSP 1 Score: 100.9 bits (250), Expect = 1.0e-21
Identity = 46/123 (37.40%), Postives = 75/123 (60.98%), Query Frame = 0


Query: 11  FLLLCAAVTLFPVSATDHIVGANR-GWNPGINYTLWANNHTFYVGDFISFRYQKNQYNVF 70
           ++ +   + +  V ++ H VG  R  WN  +N++ WAN+  FY GD++ F + + ++N+ 
Sbjct: 11  YVTVMILIIVVEVESSLHRVGGGRYTWNSDVNFSDWANHQRFYSGDWLYFGFNRTRHNIL 70

Query: 71  EVNQSGYDNCTTDGALGNWS-GGKDFIPLNKAQRYYFICGNGQCFNGMKVTILVHPLPPP 130
           +VN+S Y+ C  +  + N + GG+D   L + + YYFICG G C  GMK+ I V P PPP
Sbjct: 71  QVNKSSYEQCVDNDYIFNITRGGRDVFQLLEPKPYYFICGRGYCLKGMKLAITVLPQPPP 130

Query: 131 SSP 132
           S+P
Sbjct: 131 SAP 133

[Close]

BLAST of Clc10G12120 vs. TAIR 10
Match: AT3G17675.1 (Cupredoxin superfamily protein )

HSP 1 Score: 86.7 bits (213), Expect = 2.0e-17
Identity = 40/100 (40.00%), Postives = 59/100 (59.00%), Query Frame = 0


Query: 26  TDHIVGANRGWNPGINYTLWANNHTFYVGDFISFRYQKNQYNVFEVNQSGYDNCTTDGAL 85
           T+HIVG + GW    NYT W     F+VGD + F Y+ +Q+NV +VN + Y +C  D   
Sbjct: 7   TEHIVGDSNGWELFTNYTNWTQGREFHVGDVLVFNYKSDQHNVMQVNSTAYTDCGLDNYT 66

Query: 86  GNWSGGKDFIPLNKAQRYYFICG-NGQCFNGMKVTILVHP 125
             ++ G D I L++  + +FICG +  C NG K++I V P
Sbjct: 67  TLFTKGNDSIILSEVGKLWFICGVDDHCVNGQKLSINVAP 106

The following BLAST results are available for this feature:

BLAST of Clc10G12120 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903873.1	1.5e-86	91.72	lamin-like protein [Benincasa hispida]	[more]
XP_023526524.1	1.2e-85	88.89	lamin-like protein [Cucurbita pepo subsp. pepo]	[more]
KAG7018121.1	8.1e-85	88.30	Lamin-like protein [Cucurbita argyrosperma subsp. argyrosperma]	[more]
XP_022934432.1	3.1e-84	87.72	lamin-like protein [Cucurbita moschata]	[more]
KAG6581622.1	8.9e-84	87.72	Lamin-like protein, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc10G12120 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q39131	1.5e-25	35.63	Lamin-like protein OS=Arabidopsis thaliana OX=3702 GN=At5g15350 PE=2 SV=1	[more]
Q41001	1.1e-15	33.15	Blue copper protein OS=Pisum sativum OX=3888 PE=2 SV=1	[more]
A0A072U307	2.0e-14	30.12	Blue copper protein 1b OS=Medicago truncatula OX=3880 GN=BCP1B PE=2 SV=1	[more]
A0A0M4FTF3	4.5e-14	33.61	Blue copper protein OS=Petunia hybrida OX=4102 GN=BCP PE=2 SV=1	[more]
G7L0H3	5.9e-14	31.48	Blue copper protein 1a OS=Medicago truncatula OX=3880 GN=MTR_7g086140 PE=2 SV=1	[more]

BLAST of Clc10G12120 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1F2R0	1.5e-84	87.72	lamin-like protein OS=Cucurbita moschata OX=3662 GN=LOC111441613 PE=4 SV=1	[more]
A0A6J1J7T1	1.6e-83	87.13	lamin-like protein OS=Cucurbita maxima OX=3661 GN=LOC111482049 PE=4 SV=1	[more]
A0A1S3CN34	8.1e-83	88.30	lamin-like protein OS=Cucumis melo OX=3656 GN=LOC103502815 PE=4 SV=1	[more]
A0A0A0LCI9	5.5e-79	85.38	Phytocyanin domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G710810...	[more]
A0A6J1DHI7	4.2e-71	80.36	lamin-like protein OS=Momordica charantia OX=3673 GN=LOC111020966 PE=4 SV=1	[more]

BLAST of Clc10G12120 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G15350.1	1.1e-26	35.63	early nodulin-like protein 17	[more]
AT3G01070.1	6.9e-26	44.00	early nodulin-like protein 16	[more]
AT4G12880.1	3.8e-24	40.16	early nodulin-like protein 19	[more]
AT2G27035.1	1.0e-21	37.40	early nodulin-like protein 20	[more]
AT3G17675.1	2.0e-17	40.00	Cupredoxin superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003245	Phytocyanin domain	PFAM	PF02298	Cu_bind_like	coord: 36..116 e-value: 5.8E-21 score: 74.3
IPR003245	Phytocyanin domain	PROSITE	PS51485	PHYTOCYANIN	coord: 26..124 score: 37.491367
IPR008972	Cupredoxin	GENE3D	2.60.40.420		coord: 24..125 e-value: 5.1E-31 score: 109.0
IPR008972	Cupredoxin	SUPERFAMILY	49503	Cupredoxins	coord: 25..123
None	No IPR available	PANTHER	PTHR33021:SF13	OS09G0557900 PROTEIN	coord: 10..156
None	No IPR available	CDD	cd11017	Phytocyanin_like_1	coord: 26..122 e-value: 1.67357E-49 score: 152.93
IPR039391	Phytocyanin	PANTHER	PTHR33021	BLUE COPPER PROTEIN	coord: 10..156

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G12120.1	Clc10G12120.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
cellular_component	GO:0046658	anchored component of plasma membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0009055	electron transfer activity