Clc10G11650 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G11650
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Sm-like protein LSM7
Location	ClcChr10: 25097339 .. 25102138 (-)
RNA-Seq Expression	Clc10G11650
Synteny	Clc10G11650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGCCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTAAGCTTCAATTCACTCTCCTTCTTTGCACAAATTTCGGTTTTATGCACTCTTCTTATGCTCATTGTAGCTTTCAGTTTTCAATATTGATTTCCAGATCCATATAATGCCCTAACTTCCCCAAATTTATTTTCATCGACCAGCCGATGGAATTTTTTATTTCGCTCGTAGTAATTTGTCGCATTTCTCGGATATTTCAGGTTTCTGGTGCGTTTAATTTTACGGAGGAGCTGAGGAAACGATTGCGCGATGGTAAATTTCTGAACGATTTCTTCAATTGGAATATTGACTGTTGCTGATTACGAAGTATAATGTGGCATTCGTATCGTTTGTTTAATCAGTCTGGAAGAAAAGAAACTGTTCTGGATTTGGCTAAGTTTGTAGACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGGTTATTTCTACTAATTATGCTTATAGTATTACTGGACAATTGTTTACGATTCGTTACTTTCGGATTAGTAAGCTTTTTATTCAAGTGTTTGTTCGTGTGTTGTGGTCGAGAGGATCAAGGCACATAATCGAATGTTCGATTTTGATTTTGTTTTTCTTTATCGGTGTTTTCTTTTTGTTTTTAAATGCTAGAAAAGTGCTTTGTGAACCTTATTTTCCATTGACAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGGTAACGAATTAACTGGATACTAGCAGAATAGATGGGATTTGTGGAATTTTGTAGGCTTGTAGACTGAAAGAGCTCTCTGAGTATTGATTTTTCTTATTTATCATCACCTTCCTTTATCTGAAGGCTAATTTAAATGTTCAGGAAATAATTAGAGAGAGAGAGAGTGTGTGAGAATCATTTGATATTGGATGAAGAGGCACAAATTAAGAATTTAATTTATCAGTAACATAAGCAGACGAATAGTTTTCTATTGTACTCAAAGAAAAAAATATATAGTTTTTCCTATTAGAATAGATAGAGGTTTCTATTCTGTTGATTTAACGGATTAAGATGTGGCAGTGTAGCAAATATCCTCTCATATGAAACATTGTTTTTGTTTTGCATGTTTCCTTAAGTATATTTCCAATGGATATGTTTTTCTTTCTTTCTTTCTTTCTTTCTTTCAATAGAAAAACAGGTATGTCATTGATATGATGAACTAAATGAATAACTATGTTGTTTTATTTTTATTTTGAATCTTGGATATATTTTAAATTTACATTAGGCTGTTGCATAAATTAGCATGCTCAAATTGCACTATGATCTTGTAAACCTTTGCGTAACATCAGTTTGGATTTTATTTGTATACCCATGTACTATTATAAGATTTTGCTTGAATAAAAGTTGCAAATATGTGCAAATCTATATCAATTTCTTTCCTTATATTTTCTTTTATAAAAAGTCTTTCATAATATACGAAAGCCATCATTTTTTTTTTCTTTCTGTTGTTTAATCTTTTTCTTTCTATTGTTACTTGTAACAGGATGATTAATCAATTCATGGGCATAAATGAAATTCTAATTGTACATGTATGTGTGTGCAATACATATAATATTAATACTAAGTAATCAAAAGGCGTGGACAAAAGGGTTAGATAAGCAATTTCATCTTCCAATAGGCCAATTTTTTTGTTCTTTTATTATTATTATTATTAAATTTTAAACAATAAATTAAAATAAATTATAAAAATTTATATATATATAAAATAATTTTAAAAAAAAAAAAAAAAAAAAAAAAAAACAGTTGTGAACCTCTAGATTATTTGTCATCTGTGAGGATACATGTCAAGGGAAGTTTCAAGAGCCTCCTGTCTAGCATTTCCTACTTAAATCTAATGACAACTATTTAGCTTATGTATACTCACAGATATGGCTAACAACCTCACCCACGTCTCACCCCCAAGTATGACAGACACACCTACTAACATTATTCCCTCACATTCCCCCTCCCCTTACACACTGATACACCGTGACTGTTGAAGGCCTATCAAGAGTATATAAATTAGAGGCCAAATCTAGATGGCTCTCAGCACTTATCCAAGGTCCAAACCTTGTCTTCCTAATCTTTTTTTTTTTTTTGTCTCCTTCCAAATTTCCCACAAAAAAGCTTTGATGGGTCGGATCCACACACATCCTATTTGAACATATGCTCATGAAGAATATTGGAACAAGGCTTGATTATATGCTACAGAAGTACCATCGAAAGCTGGAGCCCATAAACTTCCAGTAGCTTATATCTTCAAGGACTGACTGAGTGGGAAGTCCTATTAATCCTCAAAATTTCCTGTTTTGTAACTACACTTTAGACACCAAACCATTAACTTAGATTGGAAGGTCTATTTATAACCCTTCCTTGGGGTCCTGGGGAAAGGGGATACCTTATCCCCTTGTCCCTTAGGTTGTTTTATTGAGGCCTTTGCTGCCTAAATAATATCTTATGTTTCTCATTAAAATAAGAAGTAAAAGTAAGAACTCTCAAAATATCCTTATAGTGTTAATATAAAATTCAGTTACTAACTGGTTGATGGGTTCATTGACTTTCATCGGGATTTGCATCTGCTTTCGCTGTCTCGTTCACCAAGTATGAACTTGCAAATTAGATTAGGACACAAGCATGGGAATTTAATATAGGTGAGACTCTTGAGCAACATTTTTTTATCTGCATCTTAATTCATAGGTTAAAATATCATTTTGGACCTATACTTTAGGTTTCATCCCATTTTAATCCTTGTATTGTACTTTCAAATATTCAAATATAGTTGTGTTTGGGATCAAAATTATATATTCGCTTACTTCATACTGCACGGTAACAAAAAGGCTCTTTCCCAGTCTTTATTTTCCATAATCAGTTTTAGTTTTGTGGTTATGTGTTTCTGTTGTTTTGATTTTTGTCCTCTACCCCATTTTCTTAATCCTCAAATTCTCTTCGGTCAACTTAGTCATGTTTATCTCTTCTGTGGTAATAATGGCCTTTTACTGCTGTTTATTAGGAACCCTTTTAGAATGAGTAATAAGTTAAAAATTGTCCTTATACCTGTTCCTGCTGTGCTTCAATGACATCGGAGGAAAATTTTGATATATTGACTAGTTTTTTTCCCTCTTTTCTCTGCAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTATGATTCTTACTATCTACATATTTTCATTGTTGTTCAAAATAAAGCAACTTTGATGAAAGCCTTGGATACCATGAACAATTTTATCAATTTTTCTTAAGAGTAATATTGTTTAAGCATGCAGCTTTCGACTTTATTTTGGCCATTTCAGTTATCTGTGCGCTAAACACAGATTAGATGGTCATAGTTAACTTGAAATTTTCAGAGGTTTTATTTATTTTTATAAAAAGAAGTAGCCATCATAAGTTACTCTGACTGAAATCCTTCGTCTCTAAGGACTGGACAAAGGCCTGTGTGTTCTGGCCGAGCATGTTTCTATCATTTGAATAATTTGTATATACATGTGCACTGTGCAATTGTTCACCTCTGCTATCCACTTGCACCATCAACTGACTTGCAAACTTTTTATGCTACTGCTCAATCATTTTGAATTTCTTGTGTGCTTTACGCATTCTCTTACTCAGTTTTTTTCCCCCTTTTTATTATTGTAATTTTAGGGGTAAGGGCATGGTTAACTATTTATTATGAAAATTGGTTGAAAATTTTAAATTATTCTATCACTAGGAAAAATTGAAAGTTATGGGTTCTTCTTAAGCGTGCATGTGCAGAAGAAGAAAATAAGTGTTCTTTAAGGCGTGTTTCTTTGTTCATATAGATTCTTTTCTTCAGTATTGGCTGGCTAGGAGTCTGTATGATTAATTTGCGTACACTTTTCACTGCAGGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGGTGCATAGATGTAATTTTTTTGTTTACTCTAATTTCCCTGTTCTGTATCTGAATATATCAAGTTTCACAATTTACTTTATGATTCCTCCCTCTCTGTCTATCAAACCATTGAGTTTCAATTCAACCCTTCTTTCTAGATACGTGGAGCACTTATCCATGTGAAGTAAAATGGTGAAATTTTGTTTAACTTTGAGCCTTATCTTACCGCTATCTGTGACTTTTACTGTGTTTTGGGTTCCTTCGCTTTGGATGCCTTCCTAAGTCTAAAAGAGTACATAACGCTTTGATGGCATTGCCCAATCAGCTGTTGCCTGATACTGACAAAGAACTGATGGTGTAGAAAGTGATATGGGACCCTGCTCCTTTGGCCGACAAAGGATTTCTTTTGTTGATTGCCCCAACTTGTTCTCTTTCGGCACATGTGAGACTGAGACTTTATGCCAAGCCGAGCCAACTATGTGGACTCAGCTCTCCAACTTGTGCTGGTAAGCTTTTCTACACTTTAATTTTTAGTTCGTTCTAATTCTATACTTAATTTTACTTTTTCTATTGCTTGCAAAAGAGGGAAACTTAGAGGCAATTTGCAATGTTGCATGCAACCTTACCCCTAACTTTTTGCACTGCACTGTTTTCTATGACCTTTTAGCTCACTGA

mRNA sequence

ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGCCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTTTCTGGTGCGTTTAATTTTACGGAGGAGCTGAGGAAACGATTGCGCGATGTCTGGAAGAAAAGAAACTACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGTGATATGGGACCCTGCTCCTTTGGCCGACAAAGGATTTCTTTTGTTGATTGCCCCAACTTGTTCTCTTTCGGCACATGTGAGACTGAGACTTTATGCCAAGCCGAGCCAACTATGTGGACTCAGCTCTCCAACTTGTGCTGAGGGAAACTTAGAGGCAATTTGCAATGTTGCATGCAACCTTACCCCTAACTTTTTGCACTGCACTGTTTTCTATGACCTTTTAGCTCACTGA

Coding sequence (CDS)

ATGATCGGGCCGGAAGAGAAATTGGGCCGGAGTCCAACTGCCTATGGTTTGGAGGGTACTTTTTCCCGCCATCGACCATTTCTCTCAACGAGCAAATCTAGGGCACATTCTTTCCGCTCCTCACCACTTCCATTGAAAGTTTCTGGTGCGTTTAATTTTACGGAGGAGCTGAGGAAACGATTGCGCGATGTCTGGAAGAAAAGAAACTACAAAGGCGTCCAAGTGAAGCTTACCGGCGGCAGACAAGTTACTGGAACGCTCAAAGGATATGATCAATTGCTAAACCTTGTGCTGGATGAAGCTATAGAGTTTCTAAGAGATCCTGATGATCCATTGAAGACAACAGATCAAACCCGGCCTCTTGGCCTAATCGTCTGCAGGGGGACTGCTGTAATGCTTGTGTCTCCAGTTGATGGTACCGACGAGATTGCTAACCCCTTCATCCAACCGGATGTGATATGGGACCCTGCTCCTTTGGCCGACAAAGGATTTCTTTTGTTGATTGCCCCAACTTGTTCTCTTTCGGCACATGTGAGACTGAGACTTTATGCCAAGCCGAGCCAACTATGTGGACTCAGCTCTCCAACTTGTGCTGAGGGAAACTTAGAGGCAATTTGCAATGTTGCATGCAACCTTACCCCTAACTTTTTGCACTGCACTGTTTTCTATGACCTTTTAGCTCACTGA

Protein sequence

MIGPEEKLGRSPTAYGLEGTFSRHRPFLSTSKSRAHSFRSSPLPLKVSGAFNFTEELRKRLRDVWKKRNYKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTAVMLVSPVDGTDEIANPFIQPDVIWDPAPLADKGFLLLIAPTCSLSAHVRLRLYAKPSQLCGLSSPTCAEGNLEAICNVACNLTPNFLHCTVFYDLLAH

Homology

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BLAST of Clc10G11650 vs. NCBI nr
Match: XP_038903588.1 (sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [Benincasa hispida] >KAA0048332.1 sm-like protein LSM7 [Cucumis melo var. makuwa])

HSP 1 Score: 166.4 bits (420), Expect = 2.9e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. NCBI nr
Match: XP_004149601.1 (sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cucumis sativus] >KGN58602.1 hypothetical protein Csa_001125 [Cucumis sativus])

HSP 1 Score: 166.0 bits (419), Expect = 3.8e-37
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. NCBI nr
Match: ERN11727.1 (hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda])

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-36
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 65  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 124

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSP DGTDEI+NPF+QPD
Sbjct: 125 VMLVSPTDGTDEISNPFVQPD 145

[Close]

BLAST of Clc10G11650 vs. NCBI nr
Match: XP_011625467.1 (sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7 [Amborella trichopoda] >XP_020526240.1 sm-like protein LSM7 [Amborella trichopoda])

HSP 1 Score: 163.3 bits (412), Expect = 2.4e-36
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSP DGTDEI+NPF+QPD
Sbjct: 77  VMLVSPTDGTDEISNPFVQPD 97

[Close]

BLAST of Clc10G11650 vs. NCBI nr
Match: XP_022152570.1 (sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 [Momordica charantia])

HSP 1 Score: 162.9 bits (411), Expect = 3.2e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot
Match: Q9SI54 (Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 148.7 bits (374), Expect = 8.2e-35
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPDVI 154
           VMLVSP DGT+EIANPF+  + +
Sbjct: 77  VMLVSPTDGTEEIANPFVTAEAV 99

[Close]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot
Match: Q9UK45 (U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 3.6e-22
Identity = 48/79 (60.76%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           K ++VK  GGR+ +G LKG+D LLNLVLD  IE++RDPDD  K T+ TR LGL+VCRGT+
Sbjct: 21  KTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTS 80

Query: 131 VMLVSPVDGTDEIANPFIQ 150
           V+L+ P DG + I NPFIQ
Sbjct: 81  VVLICPQDGMEAIPNPFIQ 99

[Close]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot
Match: Q9CQQ8 (U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.0e-21
Identity = 46/79 (58.23%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           K ++VK  GGR+ +G LKG+D LLNLVLD  +E++RDPDD  K T+ TR LGL+VCRGT+
Sbjct: 21  KTIRVKFQGGREASGILKGFDPLLNLVLDGTMEYMRDPDDQYKLTEDTRQLGLVVCRGTS 80

Query: 131 VMLVSPVDGTDEIANPFIQ 150
           V+L+ P DG + I NPF+Q
Sbjct: 81  VVLICPQDGMEAIPNPFVQ 99

[Close]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot
Match: Q54HF6 (Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX=44689 GN=lsm7 PE=3 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.6e-20
Identity = 45/77 (58.44%), Postives = 60/77 (77.92%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           K + VK TGGR+V G LKGYDQL+N+ LD+  EF+RD +DPL TTD+ R LGL+VCRG++
Sbjct: 21  KEICVKFTGGREVQGILKGYDQLVNITLDQTQEFIRDAEDPLITTDEKRFLGLVVCRGSS 80

Query: 131 VMLVSPVDGTDEIANPF 148
           VM+V P +G + I NP+
Sbjct: 81  VMMVCPTEGCEPIDNPY 97

[Close]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot
Match: O74499 (U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=lsm7 PE=1 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 6.3e-19
Identity = 44/79 (55.70%), Postives = 61/79 (77.22%), Query Frame = 0


Query: 73  VQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTAVM 132
           +Q   TGGRQ+TG LKG+DQL+NLVLD+  E LR+P+D  K T   R LGL+V RGT ++
Sbjct: 36  IQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDG-KLTGAIRKLGLVVVRGTTLV 95

Query: 133 LVSPVDGTDEIANPFIQPD 152
           L++P+DG++EI NPF+Q +
Sbjct: 96  LIAPMDGSEEIPNPFVQAE 113

[Close]

BLAST of Clc10G11650 vs. ExPASy TrEMBL
Match: A0A5A7TXR7 (Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00460 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. ExPASy TrEMBL
Match: A0A0A0LD28 (Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 1.8e-37
Identity = 80/81 (98.77%), Postives = 81/81 (100.00%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRPLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. ExPASy TrEMBL
Match: W1PP03 (Sm domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00022p00235920 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 1.2e-36
Identity = 78/81 (96.30%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA
Sbjct: 65  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 124

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSP DGTDEI+NPF+QPD
Sbjct: 125 VMLVSPTDGTDEISNPFVQPD 145

[Close]

BLAST of Clc10G11650 vs. ExPASy TrEMBL
Match: A0A6J1DI46 (sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1)

HSP 1 Score: 162.9 bits (411), Expect = 1.5e-36
Identity = 80/81 (98.77%), Postives = 80/81 (98.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRRLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSPVDGTDEIANPFIQPD
Sbjct: 77  VMLVSPVDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. ExPASy TrEMBL
Match: A0A1S3TGW6 (sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.5e-36
Identity = 78/81 (96.30%), Postives = 79/81 (97.53%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EFLRDPDDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFLRDPDDPLKTTDQTRQLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPD 152
           VMLVSP DGTDEIANPFIQPD
Sbjct: 77  VMLVSPTDGTDEIANPFIQPD 97

[Close]

BLAST of Clc10G11650 vs. TAIR 10
Match: AT2G03870.2 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-36
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPDVI 154
           VMLVSP DGT+EIANPF+  + +
Sbjct: 77  VMLVSPTDGTEEIANPFVTAEAV 99

[Close]

BLAST of Clc10G11650 vs. TAIR 10
Match: AT2G03870.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-36
Identity = 71/83 (85.54%), Postives = 77/83 (92.77%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEA+EF+RD DDPLKTTDQTR LGLIVCRGTA
Sbjct: 17  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAVEFVRDHDDPLKTTDQTRRLGLIVCRGTA 76

Query: 131 VMLVSPVDGTDEIANPFIQPDVI 154
           VMLVSP DGT+EIANPF+  + +
Sbjct: 77  VMLVSPTDGTEEIANPFVTAEAV 99

[Close]

BLAST of Clc10G11650 vs. TAIR 10
Match: AT2G23930.1 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 27/73 (36.99%), Postives = 44/73 (60.27%), Query Frame = 0


Query: 66  KKRNYKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIV 125
           KK   K +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V
Sbjct: 11  KKYMDKKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVV 70

Query: 126 CRGTAVMLVSPVD 139
            RG +++ V  ++
Sbjct: 71  IRGNSIVTVEALE 74

[Close]

BLAST of Clc10G11650 vs. TAIR 10
Match: AT2G23930.2 (probable small nuclear ribonucleoprotein G )

HSP 1 Score: 50.8 bits (120), Expect = 1.6e-06
Identity = 25/68 (36.76%), Postives = 42/68 (61.76%), Query Frame = 0


Query: 71  KGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIVCRGTA 130
           K +Q+KL   R VTGTL+G+DQ +NLV+D  +E        +   D+T  +G++V RG +
Sbjct: 3   KKLQIKLNANRMVTGTLRGFDQFMNLVVDNTVE--------VNGNDKT-DIGMVVIRGNS 61

Query: 131 VMLVSPVD 139
           ++ V  ++
Sbjct: 63  IVTVEALE 61

[Close]

BLAST of Clc10G11650 vs. TAIR 10
Match: AT3G11500.1 (Small nuclear ribonucleoprotein family protein )

HSP 1 Score: 50.4 bits (119), Expect = 2.2e-06
Identity = 25/73 (34.25%), Postives = 40/73 (54.79%), Query Frame = 0


Query: 66  KKRNYKGVQVKLTGGRQVTGTLKGYDQLLNLVLDEAIEFLRDPDDPLKTTDQTRPLGLIV 125
           KK   K +Q+KL   R V GTL+G+DQ +NLV+D  +E            D    +G++V
Sbjct: 11  KKYMDKKLQIKLNANRMVVGTLRGFDQFMNLVVDNTVEV---------NGDDKTDIGMVV 70

Query: 126 CRGTAVMLVSPVD 139
            RG +++ V  ++
Sbjct: 71  IRGNSIVTVEALE 74

The following BLAST results are available for this feature:

BLAST of Clc10G11650 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903588.1	2.9e-37	100.00	sm-like protein LSM7 [Benincasa hispida] >XP_038903589.1 sm-like protein LSM7 [B...	[more]
XP_004149601.1	3.8e-37	98.77	sm-like protein LSM7 [Cucumis sativus] >XP_004149602.1 sm-like protein LSM7 [Cuc...	[more]
ERN11727.1	2.4e-36	96.30	hypothetical protein AMTR_s00022p00235920 [Amborella trichopoda]	[more]
XP_011625467.1	2.4e-36	96.30	sm-like protein LSM7 [Amborella trichopoda] >XP_011625468.1 sm-like protein LSM7...	[more]
XP_022152570.1	3.2e-36	98.77	sm-like protein LSM7 [Momordica charantia] >XP_022152571.1 sm-like protein LSM7 ...	[more]

BLAST of Clc10G11650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SI54	8.2e-35	85.54	Sm-like protein LSM7 OS=Arabidopsis thaliana OX=3702 GN=LSM7 PE=1 SV=1	[more]
Q9UK45	3.6e-22	60.76	U6 snRNA-associated Sm-like protein LSm7 OS=Homo sapiens OX=9606 GN=LSM7 PE=1 SV...	[more]
Q9CQQ8	1.0e-21	58.23	U6 snRNA-associated Sm-like protein LSm7 OS=Mus musculus OX=10090 GN=Lsm7 PE=1 S...	[more]
Q54HF6	2.6e-20	58.44	Probable U6 snRNA-associated Sm-like protein LSm7 OS=Dictyostelium discoideum OX...	[more]
O74499	6.3e-19	55.70	U6 snRNA-associated Sm-like protein LSm7 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of Clc10G11650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TXR7	1.4e-37	100.00	Sm-like protein LSM7 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264...	[more]
A0A0A0LD28	1.8e-37	98.77	Sm domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G697950 PE=3 SV=...	[more]
W1PP03	1.2e-36	96.30	Sm domain-containing protein OS=Amborella trichopoda OX=13333 GN=AMTR_s00022p002...	[more]
A0A6J1DI46	1.5e-36	98.77	sm-like protein LSM7 OS=Momordica charantia OX=3673 GN=LOC111020268 PE=3 SV=1	[more]
A0A1S3TGW6	4.5e-36	96.30	sm-like protein LSM7 OS=Vigna radiata var. radiata OX=3916 GN=LOC106755385 PE=3 ...	[more]

BLAST of Clc10G11650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G03870.2	5.8e-36	85.54	Small nuclear ribonucleoprotein family protein	[more]
AT2G03870.1	5.8e-36	85.54	Small nuclear ribonucleoprotein family protein	[more]
AT2G23930.1	9.7e-07	36.99	probable small nuclear ribonucleoprotein G	[more]
AT2G23930.2	1.6e-06	36.76	probable small nuclear ribonucleoprotein G	[more]
AT3G11500.1	2.2e-06	34.25	Small nuclear ribonucleoprotein family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	SMART	SM00651	Sm3	coord: 63..136 e-value: 5.4E-19 score: 79.1
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 67..136 e-value: 9.5E-18 score: 63.7
None	No IPR available	GENE3D	2.30.30.100		coord: 53..146 e-value: 6.0E-26 score: 92.4
None	No IPR available	PANTHER	PTHR10553:SF30	BNAA06G33630D PROTEIN	coord: 71..151
IPR044641	Sm-like protein Lsm7/SmG	PANTHER	PTHR10553	SMALL NUCLEAR RIBONUCLEOPROTEIN	coord: 71..151
IPR017132	Sm-like protein Lsm7	CDD	cd01729	LSm7	coord: 71..147 e-value: 1.82645E-52 score: 162.37
IPR010920	LSM domain superfamily	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 70..139

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G11650.1	Clc10G11650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0000956	nuclear-transcribed mRNA catabolic process
cellular_component	GO:0071013	catalytic step 2 spliceosome
cellular_component	GO:1990726	Lsm1-7-Pat1 complex
cellular_component	GO:0120115	Lsm2-8 complex
cellular_component	GO:0097526	spliceosomal tri-snRNP complex
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0071004	U2-type prespliceosome
cellular_component	GO:0005688	U6 snRNP
molecular_function	GO:0003723	RNA binding