Clc10G11420 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G11420
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 24847850 .. 24849351 (-)
RNA-Seq ExpressionClc10G11420
SyntenyClc10G11420
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATCCGATGCTAACAGTGCCTTTCTTGTTAGGGGAGATGGTGACTTCCTCTGAAGAAGGCGAAATTCATCCTTATGGTATGTCCGCTTTACCATGTTAAAGGATGCGATGTCAACGGTTCCACAAGTTTGCACACATGCATTGACTTGGCGACTATGCAAGGTGTGTGGTGGAATTTATGTCGATGACTTAAGGACTTCAAGGTGAGCCAAACAGGTGGAAGTTGCACCATAAATTTCAATAGGGTTTATCAACATGTGACGAAAAAGGAAAATATTGGAAGGTGGTATTCCAAGTGGTCTATTTATGGTGAAGCAAGTTACAATTCTAAGATATGAGAATTATGATTGTCGGGGAAGATAATGGATGTAGTATAAGCTATGGATTATTCAAATATCTTGCCAAGGTGGAATTTGTTGATTTTTGGCAAATTATTAGAAGTGTAGTTTGTCCTACATTTGAAAAATTGAAGAAAGTGATGGGCTCCTCCTACTATAAAGAGTCTATATTTTTAGTTCCAAATCGTCCTAGTTAGAAACACTTTAGGCTAACTCTAATTAAATTCCTTTTTGAGAGTGGAAAAATGTCTGAGTAGTCAAAAGTTTGACAGGGTGCTCTTGTAATTGGGATTAGAGAGAAATATTCAGTATGATTTTAACAATTTTTTACATAGTGAATTTCTTTTTGGTGGGTCATGGTTTTTCTTCGAGTTTGGAGTTTTCTACATAAATTCTTGTGTTTCCAGTTTTATTGTATTTTTTTTTTAAAAAAATTCTCTATTATTTTTTTGCTTATTCCTATTGTAGAAGTGAAGTTTTTCCCAACATTACTGACTATTAGTGATAGAAGTATATGACGTTTGTATCACTAATAATCAGTGATATAAGACTATCTCTTATTATCATTGATAGAAATATATCACTTTCTATCCATGATTATCACTTAAACTAATATGGGTTGGCTTAGTGGTAAAAAGAAAATATAGTCTCATCAAATAACTAAGAGGTCAAAGGGTTCAATGAATGATGGCTGCCTACGTAGGAATTAATTTTCTACGAGTTTCCTTGACACCCAAATGTTGTAGGGTCAAACAGGTTGTTCCATGAGATTAGTCGAGGTGCGCATAGGCTGGGCTCAGAAGCATATCCCTTTTTATAATTAATAGACAGAATAGAATAAATAGATTTAAAGAAGTGGAGAAGAAATAGAATTTTAATTTGAAGCATATTGTAATTTTGAAGAACCTACAATCTGGTCGACTACCCAGCTCCATGTTATTTCGGACAAGCTTATGATTCTAAAGTCGGCTACTTTGGCGATGTTCATTTCTATGAGTTCCCCCAATTGATCGAACATGAACCCATTGACCATGGCTATGGAATTAGCTACTCGGCCAATGCTTCTTATGCATCGAGTTTCACTGTGCCAAAAGTAATCGAATACGACCCTCATTTTTACAGCGATGGTTTCCGTAATTGGAGGAGATGGAGAGAGTTGTAA

mRNA sequence

ATGGATCCGATGCTAACAGTGCCTTTCTTGTTAGGGGAGATGGTGACTTCCTCTGAAGAAGGCGAAATTCATCCTTATGCTCCATGTTATTTCGGACAAGCTTATGATTCTAAAGTCGGCTACTTTGGCGATGTTCATTTCTATGAGTTCCCCCAATTGATCGAACATGAACCCATTGACCATGGCTATGGAATTAGCTACTCGGCCAATGCTTCTTATGCATCGAGTTTCACTGTGCCAAAAGTAATCGAATACGACCCTCATTTTTACAGCGATGGTTTCCGTAATTGGAGGAGATGGAGAGAGTTGTAA

Coding sequence (CDS)

ATGGATCCGATGCTAACAGTGCCTTTCTTGTTAGGGGAGATGGTGACTTCCTCTGAAGAAGGCGAAATTCATCCTTATGCTCCATGTTATTTCGGACAAGCTTATGATTCTAAAGTCGGCTACTTTGGCGATGTTCATTTCTATGAGTTCCCCCAATTGATCGAACATGAACCCATTGACCATGGCTATGGAATTAGCTACTCGGCCAATGCTTCTTATGCATCGAGTTTCACTGTGCCAAAAGTAATCGAATACGACCCTCATTTTTACAGCGATGGTTTCCGTAATTGGAGGAGATGGAGAGAGTTGTAA

Protein sequence

MDPMLTVPFLLGEMVTSSEEGEIHPYAPCYFGQAYDSKVGYFGDVHFYEFPQLIEHEPIDHGYGISYSANASYASSFTVPKVIEYDPHFYSDGFRNWRRWREL
Homology
BLAST of Clc10G11420 vs. NCBI nr
Match: XP_008441695.1 (PREDICTED: uncharacterized protein LOC103485767 [Cucumis melo])

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFG-----DVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTV 87
           PCYFGQAYDS+VGYF        +F EFPQLIEHEP+DH   GY I YSANA  ASSFT+
Sbjct: 58  PCYFGQAYDSEVGYFAINAAYGSNFSEFPQLIEHEPVDHGDYGYAIRYSANACSASSFTL 117

Query: 88  PKVIEYDPHFYSD 93
           PKV  YDP  YS+
Sbjct: 118 PKVFGYDPDLYSE 130

BLAST of Clc10G11420 vs. NCBI nr
Match: KAA0056916.1 (uncharacterized protein E6C27_scaffold96G00880 [Cucumis melo var. makuwa] >TYK26343.1 uncharacterized protein E5676_scaffold861G00010 [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 2.2e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFG-----DVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTV 87
           PCYFGQAYDS+VGYF        +F EFPQLIEHEP+DH   GY I YSANA  ASSFT+
Sbjct: 42  PCYFGQAYDSEVGYFAINAAYGSNFSEFPQLIEHEPVDHGDYGYAIRYSANACSASSFTL 101

Query: 88  PKVIEYDPHFYSD 93
           PKV  YDP  YS+
Sbjct: 102 PKVFGYDPDLYSE 114

BLAST of Clc10G11420 vs. NCBI nr
Match: XP_038895690.1 (uncharacterized protein LOC120083862 [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 8.2e-16
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGDV----HFYEFPQLIEHEPIDH---GYGISYSANASYASSFTVP 87
           PCY  Q YDS+VGYF +     +FYEFPQLIE E ++H   GY ISYSANA  A SFTVP
Sbjct: 42  PCYLEQVYDSEVGYFANAPYRSNFYEFPQLIERETVNHGAYGYAISYSANACSAPSFTVP 101

Query: 88  KVIEYDPHFYSD 93
           KVIEYDP FYS+
Sbjct: 102 KVIEYDPDFYSE 113

BLAST of Clc10G11420 vs. NCBI nr
Match: KAG7019657.1 (hypothetical protein SDJN02_18620 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 90.5 bits (223), Expect = 9.1e-15
Identity = 45/71 (63.38%), Postives = 52/71 (73.24%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGDVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTVPKVIE 87
           PCYFGQAY          +F EFPQLIEH+P+DH   GY ISYSANA  AS+F+VPKVIE
Sbjct: 35  PCYFGQAYAPYTS-----NFNEFPQLIEHQPVDHGAYGYTISYSANACSASTFSVPKVIE 94

Query: 88  YDPHFYSDGFR 96
           YDP  YSDG++
Sbjct: 95  YDPDLYSDGYQ 100

BLAST of Clc10G11420 vs. NCBI nr
Match: KAG6584049.1 (hypothetical protein SDJN03_19981, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 89.0 bits (219), Expect = 2.6e-14
Identity = 44/71 (61.97%), Postives = 51/71 (71.83%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGDVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTVPKVIE 87
           PCYFGQAY          +F EFPQLIEH+P+DH   GY ISYSANA   S+F+VPKVIE
Sbjct: 35  PCYFGQAYAPYTS-----NFNEFPQLIEHQPVDHGAYGYTISYSANACSTSTFSVPKVIE 94

Query: 88  YDPHFYSDGFR 96
           YDP  YSDG++
Sbjct: 95  YDPDLYSDGYQ 100

BLAST of Clc10G11420 vs. ExPASy TrEMBL
Match: A0A5D3DRV2 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold861G00010 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFG-----DVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTV 87
           PCYFGQAYDS+VGYF        +F EFPQLIEHEP+DH   GY I YSANA  ASSFT+
Sbjct: 42  PCYFGQAYDSEVGYFAINAAYGSNFSEFPQLIEHEPVDHGDYGYAIRYSANACSASSFTL 101

Query: 88  PKVIEYDPHFYSD 93
           PKV  YDP  YS+
Sbjct: 102 PKVFGYDPDLYSE 114

BLAST of Clc10G11420 vs. ExPASy TrEMBL
Match: A0A1S3B404 (uncharacterized protein LOC103485767 OS=Cucumis melo OX=3656 GN=LOC103485767 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.0e-16
Identity = 48/73 (65.75%), Postives = 53/73 (72.60%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFG-----DVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTV 87
           PCYFGQAYDS+VGYF        +F EFPQLIEHEP+DH   GY I YSANA  ASSFT+
Sbjct: 58  PCYFGQAYDSEVGYFAINAAYGSNFSEFPQLIEHEPVDHGDYGYAIRYSANACSASSFTL 117

Query: 88  PKVIEYDPHFYSD 93
           PKV  YDP  YS+
Sbjct: 118 PKVFGYDPDLYSE 130

BLAST of Clc10G11420 vs. ExPASy TrEMBL
Match: A0A0A0LUY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G070580 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 43/73 (58.90%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGD-----VHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTV 87
           PCYFGQAYD +VGY  +      +F E PQLI+HEP+DH   GY I YSANA  ASSFT+
Sbjct: 42  PCYFGQAYDYEVGYSANDAPYRSNFNELPQLIDHEPVDHGDYGYAIRYSANACSASSFTL 101

Query: 88  PKVIEYDPHFYSD 93
           PK+ EY+P  YS+
Sbjct: 102 PKLCEYNPDLYSE 114

BLAST of Clc10G11420 vs. ExPASy TrEMBL
Match: A0A6J1EHF5 (uncharacterized protein LOC111434325 OS=Cucurbita moschata OX=3662 GN=LOC111434325 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 4.9e-14
Identity = 45/71 (63.38%), Postives = 53/71 (74.65%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGDVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTVPKVIE 87
           PCYFGQAY     Y    +  EFPQLIE++P+DH   GY ISYSANA  AS+F+VPKVIE
Sbjct: 35  PCYFGQAY---APYTSSSN--EFPQLIEYQPVDHGAYGYTISYSANACSASTFSVPKVIE 94

Query: 88  YDPHFYSDGFR 96
           YDP FYSDG++
Sbjct: 95  YDPDFYSDGYQ 100

BLAST of Clc10G11420 vs. ExPASy TrEMBL
Match: A0A6J1KI70 (uncharacterized protein LOC111495462 OS=Cucurbita maxima OX=3661 GN=LOC111495462 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 1.1e-13
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0

Query: 28  PCYFGQAYDSKVGYFGDVHFYEFPQLIEHEPIDH---GYGISYSANASYASSFTVPKVIE 87
           PCYFGQAY          +F EFPQLIEH+P+DH   GY ISYSANA  AS+F+VPKVIE
Sbjct: 38  PCYFGQAYAPYTS-----NFNEFPQLIEHQPVDHGAYGYTISYSANACSASTFSVPKVIE 97

Query: 88  YDPHFYSDG 94
           YD   YSDG
Sbjct: 98  YDSDLYSDG 101

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008441695.12.2e-1665.75PREDICTED: uncharacterized protein LOC103485767 [Cucumis melo][more]
KAA0056916.12.2e-1665.75uncharacterized protein E6C27_scaffold96G00880 [Cucumis melo var. makuwa] >TYK26... [more]
XP_038895690.18.2e-1665.28uncharacterized protein LOC120083862 [Benincasa hispida][more]
KAG7019657.19.1e-1563.38hypothetical protein SDJN02_18620 [Cucurbita argyrosperma subsp. argyrosperma][more]
KAG6584049.12.6e-1461.97hypothetical protein SDJN03_19981, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DRV21.0e-1665.75Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4041.0e-1665.75uncharacterized protein LOC103485767 OS=Cucumis melo OX=3656 GN=LOC103485767 PE=... [more]
A0A0A0LUY14.9e-1458.90Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G070580 PE=4 SV=1[more]
A0A6J1EHF54.9e-1463.38uncharacterized protein LOC111434325 OS=Cucurbita moschata OX=3662 GN=LOC1114343... [more]
A0A6J1KI701.1e-1363.77uncharacterized protein LOC111495462 OS=Cucurbita maxima OX=3661 GN=LOC111495462... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G11420.1Clc10G11420.1mRNA