Clc10G11160 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G11160
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description60S ribosomal protein L44
LocationClcChr10: 24556028 .. 24558181 (-)
RNA-Seq ExpressionClc10G11160
SyntenyClc10G11160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTTGCTGTCAATTAGTTCTGTGATGGAGAAGGCCAATAGTTGTAGTTGCGTTTTGAAAATTTACGTTGAATTGAGAGCATTGGCCCTGTACTGTTTATGCCCTTCGTTTTCTATTGCGTGTTTTTTTTTTTTCTCTCCATATTATCACTTGATCTGGGACTGTGCTTATCAACTGGTTTATCTGTTGCACTCGAGCTTAGTTTGGCTTAGTTAGCGAGGTGAGAATGTAAGTTCTATGGGGCTGGTTGTAGAATAAACCATCTGAATCATCTGGCAGCTCGTGCTGGGATCATGTCGAATTGGATGTATTTTTGTTGCACGGACTGTAAGAGGAAAAATTTAAGGACTACTGACATTTGTAGCTCATGCAATCTGGGTCCTGGATTTAGTGAATGCATGATTGCCCAATTAAGTGAAATTTGTAGTGTCACTAAACCTTTTTGTTTTTTTGGATAAGAAACAATTTCATATTGATGGTATTAAATTATAAAGGGGAACCCCAATAAGACTAATTACAGAATGCCTCTCCAATTGGAGGTGAGGGAGGAATAACTGTAGTGATGGAAGAGGGGGGTGTCACTGAACTTTTGAACGAATGTTTCTTCCTAAATTGCTAAAAAGAAGGGATTTTTCACAAGGTAAACATTGCTCATTGATGAGTGGATTATAAATTCTGGAACTTTGATTACCATAAGTTCATTGATTGTCCATCCAAAAGAAGTTTTAAACCATGGAGTCGGAATGCTGCAGTGGGTTTGCAGTATTTGTGTTTTTTTTGTCATTACAGGTTGTATTGTCATGGTTTAAGATTTGATTTGTGGATTTGGTAATGGAAAACAGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGTTAGTAATTTTCTCACATCCAGTCAAATTCTTACTTTCTCCTTTTCCGAGGTGCCATTTAGATTAGAACTGAATTGAAACTCCTGAATTTCACAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGGTTAGAATGCAAAGCAATTTATTATTTTCTAATTATATGACCTCTCTCTATTAAGTATTTTGTTAGTCTAATGCATTTTCCTAAAAAATCATTCAAGCCTATGGTGGTTCTCATACTAAATATATAATGCTGTTGGTCCAAATAAAGCTAATCCATTTCCCTCCCCTTACAAGTAAATATCCATGTAACTGCTATGCTAGTGAAGACAGTTGATACTTGATTCTAGGTTTTAAATGCCTTTACCTTTGGGTAGTTTTGTTTTCTCCATTCTTGTGTGTACGGTTTCATAGTTGAGTATCGAATTGGCACTTGGTGCTGATGTTGCAATATTTGACGTAATTGTTGCAAGTCCAAATGAGAAACTCTAATTGTTAGTTATTATCTGGTGGATTTTGTGCGGTTCCCTCATCACATTTCTAAATTGTCAAATGCAGAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTGTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTGTAATGATACTGTTTAGCTGAAACTCTCATGTCTTAATTATTGAATTGCCAAAATTTTGATGCTCTTTGTTTGATTTATCTAGTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

mRNA sequence

ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGCTAATCCATTTCCCTCCCCTTACAAAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTGTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

Coding sequence (CDS)

ATGGTACTCCTTCTTCACCCTTTTCCATTTTCTGCAATTTTAATGTCTCTTATTTCTTCTCAAGAGTCCCTCATGGGTGTACTTGTGTTCTACATCTATGATTTCTTTCACGATTTGTTCTGTTTGGTGAACGTTCCCAAGACAAAGAAGACTTATTGCAAGAGCAAGGAGTGCAGAAAGCACACCTTGCACAAGGTTACACAATATAAGAAGGGAAAGGATAGTCTTGCTGCACAGGGTAAGCGTCGGTACGATCGCAAGCAATCAGGATATGGAGGTCAGACCAAGCCTGTGTTTCACAAGAAGGCAAAAACTACCAAGAAGATTGTGTTGAGGCTGCAATGCCAAGGGTGCAAACATGTATCCCAGCACCCAATCAAGCTAATCCATTTCCCTCCCCTTACAAAGATGCAAGCACTTCGAAATTGGTGGAGACAAGAAGGGAAAGGGAACTTCTCTTTTCTAGACCCTTTGTCAGTTTTTATCTTTTGTCATTTCTTTTTCACAAGATTATTTGTTATTGGAGTTCTTGCACCATTACTCTGTGTTCAGCAATTAGTTCTACGTGCTTCCTTTCTCATAGAAACTTGTCTGCATGAGGAATCGGTCAGTAATAGAATTAATCGATTGATTATTGTTAGATTCGTGAAAATTGTCTTCCAACTATTTCACGATAACGCAGATGAGGTACATATTTTGAGATCAAGGTTATTGTATTCTGTCTGA

Protein sequence

MVLLLHPFPFSAILMSLISSQESLMGVLVFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLIHFPPLTKMQALRNWWRQEGKGNFSFLDPLSVFIFCHFFFTRLFVIGVLAPLLCVQQLVLRASFLIETCLHEESVSNRINRLIIVRFVKIVFQLFHDNADEVHILRSRLLYSV
Homology
[Close]
BLAST of Clc10G11160 vs. NCBI nr
Match: PHU17227.1 (60S ribosomal protein L44 [Capsicum chinense])

HSP 1 Score: 182.6 bits (462), Expect = 4.1e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 29  VFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 88
           +FY+        CLVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQ
Sbjct: 16  LFYLLTQKSQSICLVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 75

Query: 89  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLI 130
           SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK++
Sbjct: 76  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVL 116

[Close]
BLAST of Clc10G11160 vs. NCBI nr
Match: KAG8080729.1 (hypothetical protein GUJ93_ZPchr0007g5290 [Zizania palustris])

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-41
Identity = 94/141 (66.67%), Postives = 104/141 (73.76%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCK+KECRKHTLHKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKL------------IHFP---------------PL 156
           KAKTTKKIVL+LQCQ CKH SQH IK+            +H P                L
Sbjct: 61  KAKTTKKIVLKLQCQSCKHYSQHAIKVCCSYQHLFYILWLHSPIAILLFTCISPSVATLL 120

[Close]
BLAST of Clc10G11160 vs. NCBI nr
Match: KJB31844.1 (hypothetical protein B456_005G210700 [Gossypium raimondii])

HSP 1 Score: 179.5 bits (454), Expect = 3.5e-41
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHFPPLTKMQALRNWWRQEGKGNFSFLDPLSVF 161
           KAKTTKKIVLRLQCQGCKHVSQHPIK+           LR    + GK +  F   +   
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKV-------GASTLRLVETRRGKEHLCFKHVIHGI 120

Query: 162 IFCHFFF 169
           + C  +F
Sbjct: 121 LLCLLYF 120

[Close]
BLAST of Clc10G11160 vs. NCBI nr
Match: XP_028113736.1 (60S ribosomal protein L44-like [Camellia sinensis])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 5   LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 64

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKL 129
           KAKTTKKIVLRLQCQGCKHVSQHPIK+
Sbjct: 65  KAKTTKKIVLRLQCQGCKHVSQHPIKV 91

[Close]
BLAST of Clc10G11160 vs. NCBI nr
Match: KAG6383768.1 (hypothetical protein SASPL_156461 [Salvia splendens])

HSP 1 Score: 179.1 bits (453), Expect = 4.6e-41
Identity = 88/103 (85.44%), Postives = 92/103 (89.32%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK---LIHFPPLTKMQALR 142
           KAKTTKKIVLRLQCQGCKHVSQHPIK   L+H   L  +   R
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVCALLHASALMHLSPTR 103

[Close]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match: Q96499 (60S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 177.9 bits (450), Expect = 1.3e-43
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQGCKHVSQHPIK
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIK 86

[Close]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match: O23290 (60S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3)

HSP 1 Score: 166.0 bits (419), Expect = 5.2e-40
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match: P0CQ51 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) OX=283643 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match: P0CQ50 (60S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) OX=214684 GN=RPL44 PE=3 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.1e-33
Identity = 68/86 (79.07%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKT++TYCK K CRKHT HKVTQYKKGKDSL+AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTRRTYCKGKACRKHTPHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK   Q  +K
Sbjct: 61  KAKTTKKVVLRLECTVCKTKHQLALK 86

[Close]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match: O59870 (60S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3)

HSP 1 Score: 143.7 bits (361), Expect = 2.8e-33
Identity = 67/86 (77.91%), Postives = 76/86 (88.37%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKT++TYCK K C+KHT HKVTQYKKGKDS+ AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTRRTYCKGKACKKHTPHKVTQYKKGKDSIFAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKK+VLRL+C  CK+  Q  +K
Sbjct: 61  KAKTTKKVVLRLECSVCKYKMQMTLK 86

[Close]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match: A0A2G3CET5 (60S ribosomal protein L44 OS=Capsicum chinense OX=80379 GN=BC332_12922 PE=3 SV=1)

HSP 1 Score: 182.6 bits (462), Expect = 2.0e-42
Identity = 88/101 (87.13%), Postives = 93/101 (92.08%), Query Frame = 0 

Query: 29  VFYIYDFFHDLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 88
           +FY+        CLVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQ
Sbjct: 16  LFYLLTQKSQSICLVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQ 75

Query: 89  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKLI 130
           SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIK++
Sbjct: 76  SGYGGQTKPVFHKKAKTTKKIVLRLQCQGCKHVSQHPIKVL 116

[Close]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match: A0A0D2RJ15 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.7e-41
Identity = 92/127 (72.44%), Postives = 99/127 (77.95%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHFPPLTKMQALRNWWRQEGKGNFSFLDPLSVF 161
           KAKTTKKIVLRLQCQGCKHVSQHPIK+           LR    + GK +  F   +   
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKV-------GASTLRLVETRRGKEHLCFKHVIHGI 120

Query: 162 IFCHFFF 169
           + C  +F
Sbjct: 121 LLCLLYF 120

[Close]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match: A0A059BG29 (Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHF 132
           KAKTTKKIVLRLQCQGCKHVSQHPIK+  F
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVQAF 90

[Close]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match: A0A7J7CV40 (60S ribosomal protein L44-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13G00826 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 38  DLFCLVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 97
           +L  +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP
Sbjct: 73  ELSTMVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKP 132

Query: 98  VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 128
           VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK
Sbjct: 133 VFHKKAKTTKKIVLRLQCQGCKHVSQHPIK 162

[Close]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match: A0A0D2U3F8 (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 2.9e-41
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIKLIHF 132
           KAKTTKKIVLRLQCQGCKHVSQHPIK+  F
Sbjct: 61  KAKTTKKIVLRLQCQGCKHVSQHPIKVQAF 90

[Close]
BLAST of Clc10G11160 vs. TAIR 10
Match: AT3G23390.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of Clc10G11160 vs. TAIR 10
Match: AT4G14320.1 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

[Close]
BLAST of Clc10G11160 vs. TAIR 10
Match: AT4G14320.2 (Zinc-binding ribosomal protein family protein )

HSP 1 Score: 166.0 bits (419), Expect = 3.7e-41
Identity = 78/86 (90.70%), Postives = 82/86 (95.35%), Query Frame = 0 

Query: 42  LVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 101
           +VN+PKTK TYCK+KEC+KHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1   MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60

Query: 102 KAKTTKKIVLRLQCQGCKHVSQHPIK 128
           KAKTTKKIVLRLQCQ CKH SQ PIK
Sbjct: 61  KAKTTKKIVLRLQCQSCKHFSQRPIK 86

The following BLAST results are available for this feature:
BLAST of Clc10G11160 vs. NCBI nr
Match NameE-valueIdentityDescription
PHU17227.14.1e-4287.1360S ribosomal protein L44 [Capsicum chinense][more]
KAG8080729.12.7e-4166.67hypothetical protein GUJ93_ZPchr0007g5290 [Zizania palustris][more]
KJB31844.13.5e-4172.44hypothetical protein B456_005G210700 [Gossypium raimondii][more]
XP_028113736.14.6e-4198.8560S ribosomal protein L44-like [Camellia sinensis][more]
KAG6383768.14.6e-4185.44hypothetical protein SASPL_156461 [Salvia splendens][more]
BLAST of Clc10G11160 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q964991.3e-4398.8460S ribosomal protein L44 OS=Gossypium hirsutum OX=3635 GN=RPL44 PE=3 SV=3[more]
O232905.2e-4090.7060S ribosomal protein L36a OS=Arabidopsis thaliana OX=3702 GN=RPL36AA PE=3 SV=3[more]
P0CQ512.1e-3379.0760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
P0CQ502.1e-3379.0760S ribosomal protein L44 OS=Cryptococcus neoformans var. neoformans serotype D ... [more]
O598702.8e-3377.9160S ribosomal protein L44 OS=Phaffia rhodozyma OX=264483 GN=RPL44 PE=3 SV=3[more]
BLAST of Clc10G11160 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2G3CET52.0e-4287.1360S ribosomal protein L44 OS=Capsicum chinense OX=80379 GN=BC332_12922 PE=3 SV=1[more]
A0A0D2RJ151.7e-4172.44Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_005G210700 PE=3 ... [more]
A0A059BG292.9e-4195.56Uncharacterized protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_G02575 PE=3 SV... [more]
A0A7J7CV402.9e-4195.5660S ribosomal protein L44-like OS=Tripterygium wilfordii OX=458696 GN=HS088_TW13... [more]
A0A0D2U3F82.9e-4195.56Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_008G148400 PE=3 ... [more]
BLAST of Clc10G11160 vs. TAIR 10
Match NameE-valueIdentityDescription
AT3G23390.13.7e-4190.70Zinc-binding ribosomal protein family protein [more]
AT4G14320.13.7e-4190.70Zinc-binding ribosomal protein family protein [more]
AT4G14320.23.7e-4190.70Zinc-binding ribosomal protein family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.10.450.80coord: 42..139
e-value: 4.8E-42
score: 144.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..95
NoneNo IPR availablePANTHERPTHR10369:SF3860S RIBOSOMAL PROTEIN L44-LIKEcoord: 28..128
IPR000552Ribosomal protein L44ePFAMPF00935Ribosomal_L44coord: 60..127
e-value: 7.6E-29
score: 100.0
IPR000552Ribosomal protein L44ePANTHERPTHR1036960S RIBOSOMAL PROTEIN L36A/L44coord: 28..128
IPR000552Ribosomal protein L44ePROSITEPS01172RIBOSOMAL_L44Ecoord: 104..115
IPR011332Zinc-binding ribosomal proteinSUPERFAMILY57829Zn-binding ribosomal proteinscoord: 43..127

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G11160.2Clc10G11160.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0022625 cytosolic large ribosomal subunit
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005840 ribosome
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0004497 monooxygenase activity
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
molecular_function GO:0003735 structural constituent of ribosome