Clc10G09760 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G09760
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	ClcChr10: 22038556 .. 22039539 (+)
RNA-Seq Expression	Clc10G09760
Synteny	Clc10G09760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCCTCACCAAAAGCCCTTCCTTGGATTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAGGATGCCGGCCGAGATGGAGCTGGAAGCCAACCTATACTTTCCTGGGGCTTGCCCCAACATCTAAATCAAATTGTTGGCGGGCTAGAAAAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCGTGGTAGGCGCTGCCTATTCACTCGGACAATGCTCTGAACACGAAAGTGTGCAGTTCCGCCCCCTTCTCCCATGCTGAGTCACAGGCAGCGCCTCGGAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGCGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGTGGGTCTTTACCTACTTTCAAATATTCGTGATTTTAGGGAAGCCAAAAAACGTGAGCGCCGGGAGCGAGCCTTATTCAAAAAAAAGCCGGCCTTACCTTCTATGTTATTAGTAAAGCCTAAAGCCCTTTACTAATAGAAAGGGATTTTCTTGCTTGTTTAGTAAAATAAAATCACGCTTTTCATTTTGATAGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAATGAATGTTGGGTCGGGGGGTTCTGCCTTGTTATCAAAAAGAGAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAG

mRNA sequence

ATGCTCCTCACCAAAAGCCCTTCCTTGGATTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAGGATGCCGGCCGAGATGGAGCTGGAAGCCAACCTATACTTTCCTGGGGCTTGCCCCAACATCTAAATCAAATTGTTGGCGGGCTAGAAAAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCGTGCGCCTCGGAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGCGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAATGAATGTTGGGTCGGGGGGTTCTGCCTTGTTATCAAAAAGAGAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAG

Coding sequence (CDS)

ATGCTCCTCACCAAAAGCCCTTCCTTGGATTGGGGCAACACAGCAATGAGTAGTTCGCTCCAGGACTCCACCCCCTCGAGAGCAGGATGCCGGCCGAGATGGAGCTGGAAGCCAACCTATACTTTCCTGGGGCTTGCCCCAACATCTAAATCAAATTGTTGGCGGGCTAGAAAAGGAACCAGCCCAGCCTCTTCAAGAAAGCTTTGCGTGCGCCTCGGAAAGCACGGACGAGCCACATGCAGGGAAACTTGCACGTGTGGTTCTGGCCGCGGACCCCGGTATACTGTACTAATATGTGTAGGTCCCCGTAATTCGAGTGAGATTGTCATGGCGCAAAAGCAGATATGGTCCGGTATTCCCTTGTTCCCTGTATTGGTTATGTTCTTTATTTCTCGTCTAGCAGAAACTAATCGAGCTCCGTTTGATCTCCCAGAAGCGGAAGCTGAATCAGTTGCAGGCTATAATGTAGAATATGCGCGGGATGCGATCCTTAATAGTCCACTGTTGGCGGAAGCCAATGTCCCGGGGTCCCGGGGACTCATTCTGACTGAAACAAGGGGAGTAGATGCTTGCAGGGGCAGGGCACTCTTCATTCTTCATTCGAAACTAATGAATGTTGGGTCGGGGGGTTCTGCCTTGTTATCAAAAAGAGAGTTGGGTAAAGCAAACTCCCTCCTTGGACGAGCACGGGGCTTAGTCAAGTAG

Protein sequence

MLLTKSPSLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGTSPASSRKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGVDACRGRALFILHSKLMNVGSGGSALLSKRELGKANSLLGRARGLVK

Homology

[Close]

BLAST of Clc10G09760 vs. NCBI nr
Match: KAG4906012.1 (hypothetical protein JHK86_057259 [Glycine max] >KAG5070465.1 hypothetical protein JHK85_002842 [Glycine max] >KAG5070487.1 hypothetical protein JHK85_002864 [Glycine max] >KAG5138863.1 hypothetical protein JHK84_032631 [Glycine max] >KAG5138881.1 hypothetical protein JHK84_032649 [Glycine max])

HSP 1 Score: 299.3 bits (765), Expect = 2.9e-77
Identity = 156/209 (74.64%), Postives = 162/209 (77.51%), Query Frame = 0


Query: 8   SLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGTSPASSRK 67
           +L WG TAMSSS+QDSTPSRAGCRPRWSW+PTYTFLGLA     N  RA K   P+  +K
Sbjct: 257 ALGWGKTAMSSSVQDSTPSRAGCRPRWSWEPTYTFLGLALPQHLNQMRAPKRNQPSLFQK 316

Query: 68  LCV-----------------------------RLGKHGRATCRETCTCGSGRGPRYTVLI 127
             +                             RLGK GRATCRETCTCGSGRGPRYTVLI
Sbjct: 317 ALLGRRCLFTSLGQCSKHESVTPPSPMLSHRQRLGKRGRATCRETCTCGSGRGPRYTVLI 376

Query: 128 CVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 187
           CVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY
Sbjct: 377 CVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEY 436

[Close]

BLAST of Clc10G09760 vs. NCBI nr
Match: TXG46235.1 (hypothetical protein EZV62_028266 [Acer yangbiense])

HSP 1 Score: 291.6 bits (745), Expect = 6.1e-75
Identity = 151/181 (83.43%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 15  AMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT---------SPASS 74
           AMSSSLQDSTPSRAGCRPRWSW+PTYTFLGLA     N  RA K           +P   
Sbjct: 241 AMSSSLQDSTPSRAGCRPRWSWEPTYTFLGLALPQHLNKRRAPKRNYYRLALVLRNPLQE 300

Query: 75  RKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 134
                RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL
Sbjct: 301 SFAWQRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 360

Query: 135 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 187
           VMF ISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET
Sbjct: 361 VMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 420

[Close]

BLAST of Clc10G09760 vs. NCBI nr
Match: THG18279.1 (hypothetical protein TEA_023049 [Camellia sinensis var. sinensis])

HSP 1 Score: 291.2 bits (744), Expect = 8.0e-75
Identity = 150/187 (80.21%), Postives = 155/187 (82.89%), Query Frame = 0


Query: 1   MLLTKSPSLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT 60
           MLLTK PSL WGNTAMSSSLQD TPSRA CRPRWSW+PTYTFLGLA          ++  
Sbjct: 1   MLLTKCPSLGWGNTAMSSSLQDPTPSRARCRPRWSWEPTYTFLGLALPQHQRAGAEKESV 60

Query: 61  SPASSRKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIP 120
            P        RLGKHG+ATCRET TCGSGRGP+YTVLICVGPRNSSEIVMAQKQI SGIP
Sbjct: 61  QPLQESLAWQRLGKHGQATCRETYTCGSGRGPQYTVLICVGPRNSSEIVMAQKQIRSGIP 120

Query: 121 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 180
           LF VLVMFFIS LAETNRAPFDLPEAE ESVAGYNVEYARDAILNS LLAEANV GSRGL
Sbjct: 121 LFLVLVMFFISCLAETNRAPFDLPEAEVESVAGYNVEYARDAILNSSLLAEANVLGSRGL 180

Query: 181 ILTETRG 188
           ILTETRG
Sbjct: 181 ILTETRG 187

[Close]

BLAST of Clc10G09760 vs. NCBI nr
Match: KAF4349930.1 (hypothetical protein G4B88_002352 [Cannabis sativa])

HSP 1 Score: 274.6 bits (701), Expect = 7.7e-70
Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 71  RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI 130
           RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI
Sbjct: 7   RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI 66

Query: 131 SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGVDA 190
           SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGV A
Sbjct: 67  SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGVGA 126

Query: 191 CRGRALFILHSKLMNVGSG 210
           C GRALFILH KLMNVGSG
Sbjct: 127 CWGRALFILHLKLMNVGSG 145

[Close]

BLAST of Clc10G09760 vs. NCBI nr
Match: KAB8477452.1 (hypothetical protein FH972_025318 [Carpinus fangiana])

HSP 1 Score: 248.1 bits (632), Expect = 7.7e-62
Identity = 147/234 (62.82%), Postives = 156/234 (66.67%), Query Frame = 0


Query: 1   MLLTKSPSLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT 60
           +LLTK PSL WGNTAMSSS QDSTPSRAGCRPRWSWKPTYTFLGLA     N  +A K  
Sbjct: 335 ILLTKCPSLGWGNTAMSSSPQDSTPSRAGCRPRWSWKPTYTFLGLALPQHLNKRQAPKRN 394

Query: 61  SPASSRKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIP 120
            P+  +K    LG    +T                        +        + + +G P
Sbjct: 395 QPSLFKK--ALLGSASEST------------------------DEPHAGKLARVVLAGDP 454

Query: 121 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 180
                         ETNRAPFDLPEAEAE VAGYNVEYARDAILNSPLLAEANVPGSRGL
Sbjct: 455 --------------ETNRAPFDLPEAEAELVAGYNVEYARDAILNSPLLAEANVPGSRGL 514

Query: 181 ILTETRGVDACRGRALFILHSKLMNVGSGGSALLSKRELGKANSLLGRARGLVK 235
           ILTETRGV AC G ALFILHSKLMNVGSG SALLSKRELGKANSLLGRARGLVK
Sbjct: 515 ILTETRGVGACWGGALFILHSKLMNVGSGFSALLSKRELGKANSLLGRARGLVK 528

[Close]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)

HSP 1 Score: 192.6 bits (488), Expect = 5.1e-48
Identity = 101/117 (86.32%), Postives = 102/117 (87.18%), Query Frame = 0


Query: 97  LICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNV 156
           LICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNV
Sbjct: 135 LICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNV 194

Query: 157 EYARDAILNSPLLAEANVPGSRG------LILTETRGVDACRGRALFILHSKLMNVG 208
           EYA DAILNSPLLAEANVPG  G      + L    GVDACRGR LFILHSKLMNVG
Sbjct: 195 EYAWDAILNSPLLAEANVPGXPGTHSDNKITLFILIGVDACRGRELFILHSKLMNVG 251

[Close]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot
Match: Q01300 (NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 6.9e-29
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVG RNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY
Sbjct: 157 TVLICVGSRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot
Match: P92558 (NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE=1 SV=4)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-25
Identity = 58/65 (89.23%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVG  N SEIVMAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGY
Sbjct: 157 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot
Match: P31839 (NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-25
Identity = 58/65 (89.23%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVG  N SEIVMAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGY
Sbjct: 163 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGY 222

Query: 155 NVEYA 160
           NVEY+
Sbjct: 223 NVEYS 227

[Close]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot
Match: Q01148 (NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.0e-25
Identity = 58/65 (89.23%), Postives = 59/65 (90.77%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVG  N SEIVMAQKQIW GIPLFPVLVMFFIS LAETNRAPFDLPEAEAE VAGY
Sbjct: 157 TVLICVGSCNLSEIVMAQKQIWFGIPLFPVLVMFFISCLAETNRAPFDLPEAEAELVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. ExPASy TrEMBL
Match: A0A5C7GNZ1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028266 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 3.0e-75
Identity = 151/181 (83.43%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 15  AMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT---------SPASS 74
           AMSSSLQDSTPSRAGCRPRWSW+PTYTFLGLA     N  RA K           +P   
Sbjct: 241 AMSSSLQDSTPSRAGCRPRWSWEPTYTFLGLALPQHLNKRRAPKRNYYRLALVLRNPLQE 300

Query: 75  RKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 134
                RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL
Sbjct: 301 SFAWQRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 360

Query: 135 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 187
           VMF ISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET
Sbjct: 361 VMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 420

[Close]

BLAST of Clc10G09760 vs. ExPASy TrEMBL
Match: A0A5C7GPI4 (NADH-ubiquinone oxidoreductase chain 1 OS=Acer yangbiense OX=1000413 GN=EZV62_027788 PE=3 SV=1)

HSP 1 Score: 291.6 bits (745), Expect = 3.0e-75
Identity = 151/181 (83.43%), Postives = 153/181 (84.53%), Query Frame = 0


Query: 15  AMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT---------SPASS 74
           AMSSSLQDSTPSRAGCRPRWSW+PTYTFLGLA     N  RA K           +P   
Sbjct: 133 AMSSSLQDSTPSRAGCRPRWSWEPTYTFLGLALPQHLNKRRAPKRNYYRLALVLRNPLQE 192

Query: 75  RKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 134
                RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL
Sbjct: 193 SFAWQRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVL 252

Query: 135 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 187
           VMF ISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET
Sbjct: 253 VMFLISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTET 312

[Close]

BLAST of Clc10G09760 vs. ExPASy TrEMBL
Match: A0A4S4ENK5 (Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_023049 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.9e-75
Identity = 150/187 (80.21%), Postives = 155/187 (82.89%), Query Frame = 0


Query: 1   MLLTKSPSLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT 60
           MLLTK PSL WGNTAMSSSLQD TPSRA CRPRWSW+PTYTFLGLA          ++  
Sbjct: 1   MLLTKCPSLGWGNTAMSSSLQDPTPSRARCRPRWSWEPTYTFLGLALPQHQRAGAEKESV 60

Query: 61  SPASSRKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIP 120
            P        RLGKHG+ATCRET TCGSGRGP+YTVLICVGPRNSSEIVMAQKQI SGIP
Sbjct: 61  QPLQESLAWQRLGKHGQATCRETYTCGSGRGPQYTVLICVGPRNSSEIVMAQKQIRSGIP 120

Query: 121 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 180
           LF VLVMFFIS LAETNRAPFDLPEAE ESVAGYNVEYARDAILNS LLAEANV GSRGL
Sbjct: 121 LFLVLVMFFISCLAETNRAPFDLPEAEVESVAGYNVEYARDAILNSSLLAEANVLGSRGL 180

Query: 181 ILTETRG 188
           ILTETRG
Sbjct: 181 ILTETRG 187

[Close]

BLAST of Clc10G09760 vs. ExPASy TrEMBL
Match: A0A7J6DW66 (NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=G4B88_002352 PE=3 SV=1)

HSP 1 Score: 274.6 bits (701), Expect = 3.7e-70
Identity = 136/139 (97.84%), Postives = 136/139 (97.84%), Query Frame = 0


Query: 71  RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI 130
           RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI
Sbjct: 7   RLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFI 66

Query: 131 SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGVDA 190
           SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGV A
Sbjct: 67  SRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGLILTETRGVGA 126

Query: 191 CRGRALFILHSKLMNVGSG 210
           C GRALFILH KLMNVGSG
Sbjct: 127 CWGRALFILHLKLMNVGSG 145

[Close]

BLAST of Clc10G09760 vs. ExPASy TrEMBL
Match: A0A5N6L392 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025318 PE=3 SV=1)

HSP 1 Score: 248.1 bits (632), Expect = 3.8e-62
Identity = 147/234 (62.82%), Postives = 156/234 (66.67%), Query Frame = 0


Query: 1   MLLTKSPSLDWGNTAMSSSLQDSTPSRAGCRPRWSWKPTYTFLGLAPTSKSNCWRARKGT 60
           +LLTK PSL WGNTAMSSS QDSTPSRAGCRPRWSWKPTYTFLGLA     N  +A K  
Sbjct: 335 ILLTKCPSLGWGNTAMSSSPQDSTPSRAGCRPRWSWKPTYTFLGLALPQHLNKRQAPKRN 394

Query: 61  SPASSRKLCVRLGKHGRATCRETCTCGSGRGPRYTVLICVGPRNSSEIVMAQKQIWSGIP 120
            P+  +K    LG    +T                        +        + + +G P
Sbjct: 395 QPSLFKK--ALLGSASEST------------------------DEPHAGKLARVVLAGDP 454

Query: 121 LFPVLVMFFISRLAETNRAPFDLPEAEAESVAGYNVEYARDAILNSPLLAEANVPGSRGL 180
                         ETNRAPFDLPEAEAE VAGYNVEYARDAILNSPLLAEANVPGSRGL
Sbjct: 455 --------------ETNRAPFDLPEAEAELVAGYNVEYARDAILNSPLLAEANVPGSRGL 514

Query: 181 ILTETRGVDACRGRALFILHSKLMNVGSGGSALLSKRELGKANSLLGRARGLVK 235
           ILTETRGV AC G ALFILHSKLMNVGSG SALLSKRELGKANSLLGRARGLVK
Sbjct: 515 ILTETRGVGACWGGALFILHSKLMNVGSGFSALLSKRELGKANSLLGRARGLVK 528

[Close]

BLAST of Clc10G09760 vs. TAIR 10
Match: ATMG01120.1 (NADH dehydrogenase 1B )

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMF ISRLAETNRAPFDLPEAEAESVAGY
Sbjct: 157 TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. TAIR 10
Match: ATMG00516.1 (NADH dehydrogenase 1C )

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMF ISRLAETNRAPFDLPEAEAESVAGY
Sbjct: 157 TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. TAIR 10
Match: ATMG01275.1 (NADH dehydrogenase 1A )

HSP 1 Score: 129.8 bits (325), Expect = 2.9e-30
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 0


Query: 95  TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFFISRLAETNRAPFDLPEAEAESVAGY 154
           TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMF ISRLAETNRAPFDLPEAEAESVAGY
Sbjct: 157 TVLICVGPRNSSEIVMAQKQIWSGIPLFPVLVMFLISRLAETNRAPFDLPEAEAESVAGY 216

Query: 155 NVEYA 160
           NVEY+
Sbjct: 217 NVEYS 221

[Close]

BLAST of Clc10G09760 vs. TAIR 10
Match: ATCG01100.1 (NADH dehydrogenase family protein )

HSP 1 Score: 47.8 bits (112), Expect = 1.4e-05
Identity = 21/34 (61.76%), Postives = 25/34 (73.53%), Query Frame = 0


Query: 126 VMFFISRLAETNRAPFDLPEAEAESVAGYNVEYA 160
           ++F IS LAE  R PFDLPEAE E +AGY  EY+
Sbjct: 216 IIFLISSLAECERLPFDLPEAEEELIAGYQTEYS 249

The following BLAST results are available for this feature:

BLAST of Clc10G09760 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG4906012.1	2.9e-77	74.64	hypothetical protein JHK86_057259 [Glycine max] >KAG5070465.1 hypothetical prote...	[more]
TXG46235.1	6.1e-75	83.43	hypothetical protein EZV62_028266 [Acer yangbiense]	[more]
THG18279.1	8.0e-75	80.21	hypothetical protein TEA_023049 [Camellia sinensis var. sinensis]	[more]
KAF4349930.1	7.7e-70	97.84	hypothetical protein G4B88_002352 [Cannabis sativa]	[more]
KAB8477452.1	7.7e-62	62.82	hypothetical protein FH972_025318 [Carpinus fangiana]	[more]

BLAST of Clc10G09760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08834	5.1e-48	86.32	NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ...	[more]
Q01300	6.9e-29	96.92	NADH-ubiquinone oxidoreductase chain 1 OS=Petunia hybrida OX=4102 GN=ND1 PE=3 SV...	[more]
P92558	6.0e-25	89.23	NADH-ubiquinone oxidoreductase chain 1 OS=Arabidopsis thaliana OX=3702 GN=ND1 PE...	[more]
P31839	6.0e-25	89.23	NADH-ubiquinone oxidoreductase chain 1 OS=Oenothera berteroana OX=3950 GN=ND1 PE...	[more]
Q01148	6.0e-25	89.23	NADH-ubiquinone oxidoreductase chain 1 OS=Triticum aestivum OX=4565 GN=ND1 PE=2 ...	[more]

BLAST of Clc10G09760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5C7GNZ1	3.0e-75	83.43	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_028266 PE=3 SV=1	[more]
A0A5C7GPI4	3.0e-75	83.43	NADH-ubiquinone oxidoreductase chain 1 OS=Acer yangbiense OX=1000413 GN=EZV62_02...	[more]
A0A4S4ENK5	3.9e-75	80.21	Uncharacterized protein OS=Camellia sinensis var. sinensis OX=542762 GN=TEA_0230...	[more]
A0A7J6DW66	3.7e-70	97.84	NADH-ubiquinone oxidoreductase chain 1 OS=Cannabis sativa OX=3483 GN=G4B88_00235...	[more]
A0A5N6L392	3.8e-62	62.82	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_025318 PE=3 SV=1	[more]

BLAST of Clc10G09760 vs. TAIR 10


Match Name	E-value	Identity	Description
ATMG01120.1	2.9e-30	96.92	NADH dehydrogenase 1B	[more]
ATMG00516.1	2.9e-30	96.92	NADH dehydrogenase 1C	[more]
ATMG01275.1	2.9e-30	96.92	NADH dehydrogenase 1A	[more]
ATCG01100.1	1.4e-05	61.76	NADH dehydrogenase family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PFAM	PF00146	NADHdh	coord: 95..159 e-value: 1.2E-17 score: 64.3
IPR001694	NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H	PANTHER	PTHR11432	NADH DEHYDROGENASE SUBUNIT 1	coord: 74..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..30
None	No IPR available	PANTHER	PTHR11432:SF17	NADH-QUINONE OXIDOREDUCTASE PROTEIN	coord: 74..213
IPR018086	NADH:ubiquinone oxidoreductase, subunit 1, conserved site	PROSITE	PS00668	COMPLEX1_ND1_2	coord: 140..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G09760.1	Clc10G09760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009060	aerobic respiration
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0005747	mitochondrial respiratory chain complex I
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0005840	ribosome
cellular_component	GO:0016020	membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome