Clc10G09225 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G09225
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRetrotransposon protein
LocationClcChr10: 20989452 .. 20990615 (-)
RNA-Seq ExpressionClc10G09225
SyntenyClc10G09225
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCCCAAACTCATTACTTGACGAAGGAGAGGGAAGTCAGGAGGGACCAATTCCAACAGATAATGAGAATATTGATTTTGGGGAGACCTCCGATGCATTTACTACATGGAGGGATGATCTCGCGAATCAAATGTGGGCTGAATGGAATGCAAATTAATGACGCCAGTGGGCCCAACTTTTGTATAGTCCTTTTTGTTATGTATACAGTATTTGGTTCACGCCCGACGTGTATGTTTTGTATATTTTTTTTGTATAACACATGTTTATATTTCAATGTATAGTTTGAATGAAGTGATTCTTATTGTATACAGTCTCAATGGGTTAATGCTTGCTCCCCACACTACATCTTCATGTTCTAGCTTGATTGTGTTAAAATTATTTAATTTTAGATGGAAGCATCCGGATCACGTGCAAGAGCCACAAAACATATTTGGACGGATGAGGAGGACTGAATCCTCGTGGCGTGTTTGGTCCAATGTGTTCAGTCCGGGCATTGGGGAGCTGATAACGAGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGGTAAGCCCACATTTGGAGTCAAGGGTCAGGACGTTGAAGAGACAGTACAGCGCGATCACTGAAATGTTAGGCACAGGATGTAGTGGGTTTGGTTGGAATGCAGAGCGCAAATGTATTTTCTTATTTCTTTTATTTATTTCTTTTTGTTTTAAATATGTCTTAACCATAACACATTTCACCTTTAACAGAGTCATTCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTTTGACGACTTGGCCATTGTATTCGGTAAAGATAGAGCCACAGGAAGTCGTGCAACCACCACTGCAGAGGTCGGATCTGAACTTGTTGTGGACAAGGAGAACGAGGACATCTTGAATAACCAGTCCTCGGACTTTGAGAACTTCTATATTCGTGATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGGCAGTAGAGGATCTGCGAGTAGCATGTCATCAAGAAGTAGGAGGTCCCAAAGTTCCTTGATTGGAGAGTACAGTGACTTGGTTCGAGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGTCAAAATAA

mRNA sequence

ATGGGCCCAAACTCATTACTTGACGAAGGAGAGGGAAGTCAGGAGGGACCAATTCCAACAGATAATGAGAATATTGATTTTGGGGAGACCTCCGATGCATTTACTACATGGAGGGATGATCTCGCGAATCAAATTCTCAATGGGTTAATGCTTGCTCCCCACACTACATCTTCATGTTCTAGCTTGATTTCCGGGCATTGGGGAGCTGATAACGAGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGAGTCATTCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTTTGACGACTTGGCCATTGTATTCGGTAAAGATAGAGCCACAGGAAGTCGTGCAACCACCACTGCAGAGGTCGGATCTGAACTTGTTGTGGACAAGGAGAACGAGGACATCTTGAATAACCAGTCCTCGGACTTTGAGAACTTCTATATTCGTGATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGGCAGTAGAGGATCTGCGAGTAGCATGTCATCAAGAAGTAGGAGGTCCCAAAGTTCCTTGATTGGAGAGTACAGTGACTTGGTTCGAGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGTCAAAATAA

Coding sequence (CDS)

ATGGGCCCAAACTCATTACTTGACGAAGGAGAGGGAAGTCAGGAGGGACCAATTCCAACAGATAATGAGAATATTGATTTTGGGGAGACCTCCGATGCATTTACTACATGGAGGGATGATCTCGCGAATCAAATTCTCAATGGGTTAATGCTTGCTCCCCACACTACATCTTCATGTTCTAGCTTGATTTCCGGGCATTGGGGAGCTGATAACGAGACTTTCCGACCTGGATTCCTAGCGAACATACTGCGGATGATGCAGCAGAGGATTCCAGGGTGTTCCATACAGAGTCATTCGAGTGCAAAAGGACTGCGACATAAGTCATTTCCGTTCTTTGACGACTTGGCCATTGTATTCGGTAAAGATAGAGCCACAGGAAGTCGTGCAACCACCACTGCAGAGGTCGGATCTGAACTTGTTGTGGACAAGGAGAACGAGGACATCTTGAATAACCAGTCCTCGGACTTTGAGAACTTCTATATTCGTGATCCACCTTTTGTCAACTCTCCCACATCAGAGGACACTCCAACTACCCCCGGCAGTAGAGGATCTGCGAGTAGCATGTCATCAAGAAGTAGGAGGTCCCAAAGTTCCTTGATTGGAGAGTACAGTGACTTGGTTCGAGAGGGATTCCAACTTCTGACGAAGTCCATTGACGGCATTGCACAGTCAAAATAA

Protein sequence

MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCSSLISGHWGADNETFRPGFLANILRMMQQRIPGCSIQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVVDKENEDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGSRGSASSMSSRSRRSQSSLIGEYSDLVREGFQLLTKSIDGIAQSK
Homology
BLAST of Clc10G09225 vs. NCBI nr
Match: KAA0048191.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 108.6 bits (270), Expect = 7.1e-20
Identity = 83/259 (32.05%), Postives = 125/259 (48.26%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQIL--------NGLMLA 60
           M   +  +E    ++     + ENI+F ET++ +T WRD+LANQ+           L   
Sbjct: 277 MSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTSTNLKAT 336

Query: 61  PH--TTSSCSSLI--------SGHWGADNETFRPGFLANILRMMQQRIPGCSIQ------ 120
            H  TT    +L+         G W  DN TF+  +L  I ++M+++I G +IQ      
Sbjct: 337 QHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGSNIQVTPNLE 396

Query: 121 -----------SHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVVDKEN 180
                       H + + L +K FP+F DL +VFG+DRATG R  T+ E+GS+ V D E 
Sbjct: 397 LRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEE 456

Query: 181 EDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQSSLIGEY 223
           +D+      + E+F I +P  +  P+ ED P+TP S      SS  S+ RRS S   G+ 
Sbjct: 457 DDM----DINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYS---GDL 516

BLAST of Clc10G09225 vs. NCBI nr
Match: KAA0063789.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-18
Identity = 74/238 (31.09%), Postives = 114/238 (47.90%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCS 60
           MG  +  +E    +      + ENI+F ET + +T WRD+LANQ+         T S  +
Sbjct: 1   MGSEATFEEPHLGESDSSEMNIENINFVETINVWTEWRDNLANQMFEDWNNMASTNSKAT 60

Query: 61  S------------------LISGHWGADNETFRPGFLANILRMMQQRIPGCS-------- 120
                              +  G W ADNETF+PG+L  ++  M +  P  S        
Sbjct: 61  KHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMR--PAYSRFGWNEER 120

Query: 121 -------------IQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVV 180
                        ++ H++A+GL +K+FP+F DL +VFG+DRAT  R  T  ++GS++  
Sbjct: 121 KCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQMGSQIAK 180

Query: 181 DKENEDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQS 198
           D E +D+      + E+F I +P  +  P+ ED  +TP S    + SS  S+ RRS S
Sbjct: 181 DTEEDDM----DINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPSKKRRSYS 232

BLAST of Clc10G09225 vs. NCBI nr
Match: TYK08067.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 94.7 bits (234), Expect = 1.1e-15
Identity = 77/242 (31.82%), Postives = 113/242 (46.69%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQIL--------NGLMLA 60
           M   +  +E    ++     + ENI+F ET++ +T WRD+LANQ+           L   
Sbjct: 255 MSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTSTNLKAT 314

Query: 61  PH--TTSSCSSLI--------SGHWGADNETFRPGFLANILRMMQQRIPGCSIQSHSSAK 120
            H  TT    +L+         G W  DN TF+  +L                  H + +
Sbjct: 315 QHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYL-----------------GHPNVR 374

Query: 121 GLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVVDKENEDILNNQSSDFENFYIR 180
            L +K FP+F DL +VFG+DRATG R  T+ E+GS+ V D E +D+      + E+F I 
Sbjct: 375 SLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDM----DINLEHFDIL 434

Query: 181 DPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQSSLIGEYSDLVREGFQLLTKSIDG 223
           +P  +  P+ ED P+TP S      SS  S+ RRS S   G+  D      +  +K I  
Sbjct: 435 NPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYS---GDLMDTFHASMRETSKEIGK 472

BLAST of Clc10G09225 vs. NCBI nr
Match: KAA0051849.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 93.2 bits (230), Expect = 3.1e-15
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 0

Query: 8   DEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCSSLISGHW 67
           DE EG       T +E+I + ET + ++ WRD+LA  +                     W
Sbjct: 274 DEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFT------------------EW 333

Query: 68  GADNETFRPGFLANILRMMQQRIPGCSIQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGS 127
              N TFR G+LA ++RMM +++PGC  QSH + KGL +K FP++D+L  VF +DRAT  
Sbjct: 334 QLHNGTFRSGYLAQLVRMMAEKLPGC--QSHPAVKGLLNKPFPYYDELTYVFDRDRATDQ 383

Query: 128 RATTTAEVGS 138
            A T A+VGS
Sbjct: 394 FAETFADVGS 383

BLAST of Clc10G09225 vs. NCBI nr
Match: ADN33754.1 (retrotransposon protein [Cucumis melo subsp. melo])

HSP 1 Score: 92.8 bits (229), Expect = 4.0e-15
Identity = 67/244 (27.46%), Postives = 101/244 (41.39%), Query Frame = 0

Query: 4   NSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCSSLI 63
           N + DE EG       T +E+I + ET++ ++ WRDDLA  +          +     + 
Sbjct: 287 NDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRGGDSCGMELVS 346

Query: 64  SGHWGADNETFRPGFLANILRMMQQRIPGCS----------------------------- 123
            G W +DN TFRPG+LA ++RMM +++ GC                              
Sbjct: 347 MGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPAC 406

Query: 124 ----------------------IQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTT 183
                                 ++S  +AKGL +  FP++D+L  VFG+DRATG  A T 
Sbjct: 407 SGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETF 466

Query: 184 AEVGSELVVDKENEDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGSRGSASSMSSRS 197
           A+VGS       +   + + + DF   Y R    +        P+      + SS S R 
Sbjct: 467 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRK 526

BLAST of Clc10G09225 vs. ExPASy TrEMBL
Match: A0A5A7U3R2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold63G001010 PE=3 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.4e-20
Identity = 83/259 (32.05%), Postives = 125/259 (48.26%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQIL--------NGLMLA 60
           M   +  +E    ++     + ENI+F ET++ +T WRD+LANQ+           L   
Sbjct: 277 MSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTSTNLKAT 336

Query: 61  PH--TTSSCSSLI--------SGHWGADNETFRPGFLANILRMMQQRIPGCSIQ------ 120
            H  TT    +L+         G W  DN TF+  +L  I ++M+++I G +IQ      
Sbjct: 337 QHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYLVQIQKLMKEKIHGSNIQVTPNLE 396

Query: 121 -----------SHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVVDKEN 180
                       H + + L +K FP+F DL +VFG+DRATG R  T+ E+GS+ V D E 
Sbjct: 397 LRIKILKKQYTGHPNVRSLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEE 456

Query: 181 EDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQSSLIGEY 223
           +D+      + E+F I +P  +  P+ ED P+TP S      SS  S+ RRS S   G+ 
Sbjct: 457 DDM----DINLEHFDILNPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYS---GDL 516

BLAST of Clc10G09225 vs. ExPASy TrEMBL
Match: A0A5A7VE44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold202G00500 PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 74/238 (31.09%), Postives = 114/238 (47.90%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCS 60
           MG  +  +E    +      + ENI+F ET + +T WRD+LANQ+         T S  +
Sbjct: 1   MGSEATFEEPHLGESDSSEMNIENINFVETINVWTEWRDNLANQMFEDWNNMASTNSKAT 60

Query: 61  S------------------LISGHWGADNETFRPGFLANILRMMQQRIPGCS-------- 120
                              +  G W ADNETF+PG+L  ++  M +  P  S        
Sbjct: 61  KHQWTTIEDEALVECLLQLVEEGGWRADNETFKPGYLYTVIAKMMR--PAYSRFGWNEER 120

Query: 121 -------------IQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVV 180
                        ++ H++A+GL +K+FP+F DL +VFG+DRAT  R  T  ++GS++  
Sbjct: 121 KCIEAEKSVFDDWVKGHTNARGLLNKAFPYFYDLEVVFGRDRATIGRCKTPVQMGSQIAK 180

Query: 181 DKENEDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQS 198
           D E +D+      + E+F I +P  +  P+ ED  +TP S    + SS  S+ RRS S
Sbjct: 181 DTEEDDM----DINLEDFDIPNPHGLKPPSGEDMTSTPTSMAHDAGSSRPSKKRRSYS 232

BLAST of Clc10G09225 vs. ExPASy TrEMBL
Match: A0A5D3C7X6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002160 PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.1e-16
Identity = 77/242 (31.82%), Postives = 113/242 (46.69%), Query Frame = 0

Query: 1   MGPNSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQIL--------NGLMLA 60
           M   +  +E    ++     + ENI+F ET++ +T WRD+LANQ+           L   
Sbjct: 255 MSSEATFEEPHLGEDDSSEMNIENINFVETTNVWTEWRDNLANQMFEDWNNMTSTNLKAT 314

Query: 61  PH--TTSSCSSLI--------SGHWGADNETFRPGFLANILRMMQQRIPGCSIQSHSSAK 120
            H  TT    +L+         G W  DN TF+  +L                  H + +
Sbjct: 315 QHRWTTIEDEALVECLLQLMEEGGWRVDNGTFKLRYL-----------------GHPNVR 374

Query: 121 GLRHKSFPFFDDLAIVFGKDRATGSRATTTAEVGSELVVDKENEDILNNQSSDFENFYIR 180
            L +K FP+F DL +VFG+DRATG R  T+ E+GS+ V D E +D+      + E+F I 
Sbjct: 375 SLLNKPFPYFYDLEVVFGRDRATGGRCKTSVEMGSQTVRDTEEDDM----DINLEHFDIL 434

Query: 181 DPPFVNSPTSEDTPTTPGS--RGSASSMSSRSRRSQSSLIGEYSDLVREGFQLLTKSIDG 223
           +P  +  P+ ED P+TP S      SS  S+ RRS S   G+  D      +  +K I  
Sbjct: 435 NPHGLELPSGEDMPSTPTSMVHDVKSSRPSKKRRSYS---GDLMDTFHASMRETSKEIGK 472

BLAST of Clc10G09225 vs. ExPASy TrEMBL
Match: A0A5A7UEC4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G002780 PE=3 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-15
Identity = 51/130 (39.23%), Postives = 72/130 (55.38%), Query Frame = 0

Query: 8   DEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCSSLISGHW 67
           DE EG       T +E+I + ET + ++ WRD+LA  +                     W
Sbjct: 274 DEDEGDSTYATITASEDIQYIETINEWSQWRDNLAESMFT------------------EW 333

Query: 68  GADNETFRPGFLANILRMMQQRIPGCSIQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGS 127
              N TFR G+LA ++RMM +++PGC  QSH + KGL +K FP++D+L  VF +DRAT  
Sbjct: 334 QLHNGTFRSGYLAQLVRMMAEKLPGC--QSHPAVKGLLNKPFPYYDELTYVFDRDRATDQ 383

Query: 128 RATTTAEVGS 138
            A T A+VGS
Sbjct: 394 FAETFADVGS 383

BLAST of Clc10G09225 vs. ExPASy TrEMBL
Match: E5GBB2 (Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 1.9e-15
Identity = 67/244 (27.46%), Postives = 101/244 (41.39%), Query Frame = 0

Query: 4   NSLLDEGEGSQEGPIPTDNENIDFGETSDAFTTWRDDLANQILNGLMLAPHTTSSCSSLI 63
           N + DE EG       T +E+I + ET++ ++ WRDDLA  +          +     + 
Sbjct: 287 NDVEDEDEGDSTYATTTASEDIQYIETTNEWSQWRDDLATSMFTDWQFRGGDSCGMELVS 346

Query: 64  SGHWGADNETFRPGFLANILRMMQQRIPGCS----------------------------- 123
            G W +DN TFRPG+LA ++RMM +++ GC                              
Sbjct: 347 MGGWKSDNGTFRPGYLAQLVRMMAEKLSGCQVRATTVIDCRIKTLKRTFQAIAEMLGPAC 406

Query: 124 ----------------------IQSHSSAKGLRHKSFPFFDDLAIVFGKDRATGSRATTT 183
                                 ++S  +AKGL +  FP++D+L  VFG+DRATG  A T 
Sbjct: 407 SGFGWNDEEKCIVAEKELFDNWVRSPPAAKGLLNNPFPYYDELTYVFGRDRATGRFAETF 466

Query: 184 AEVGSELVVDKENEDILNNQSSDFENFYIRDPPFVNSPTSEDTPTTPGSRGSASSMSSRS 197
           A+VGS       +   + + + DF   Y R    +        P+      + SS S R 
Sbjct: 467 ADVGSNEPGGGYDRFDMGDGNEDFPPVYSRGVDILQDDVRASRPSRASEGKTGSSGSKRK 526

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0048191.17.1e-2032.05retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063789.13.9e-1831.09retrotransposon protein [Cucumis melo var. makuwa] >TYK07334.1 retrotransposon p... [more]
TYK08067.11.1e-1531.82retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051849.13.1e-1539.23retrotransposon protein [Cucumis melo var. makuwa][more]
ADN33754.14.0e-1527.46retrotransposon protein [Cucumis melo subsp. melo][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U3R23.4e-2032.05Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VE441.9e-1831.09Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3C7X65.1e-1631.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UEC41.5e-1539.23Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
E5GBB21.9e-1527.46Retrotransposon protein OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 168..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 165..198
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 95..218

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G09225.1Clc10G09225.1mRNA