Clc10G08560 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G08560
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	ClcChr10: 18918952 .. 18919293 (+)
RNA-Seq Expression	Clc10G08560
Synteny	Clc10G08560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGAGCTAAGCTTCCTACATTGGTATGGGGACATGCTATTTTGCATGCTGCGTCACTTGCACGCATTAGGCCAGTAGCTTATCATAAATACTCACCATTACAATTAGCTTATGGCCAAGAGCCAAATATTTCCCATCTAAGAATTTTTGGATGTGAAGTATACGTTCTAATTGCTCCACCACAACATACTAAGACGGGTCCTCAAAGGAGGTTAGGAATATACATTGGATATGATTCCCCATCAATTATTAAATATCTTGAACCTCTGACGGGTGATGTATTTACTGCACGATTTGCTGATTGTCATATTAATGAGACAAATTTTCCAACATTAGGGTGA

mRNA sequence

ATGAGAGCTAAGCTTCCTACATTGGTATGGGGACATGCTATTTTGCATGCTGCGTCACTTGCACGCATTAGGCCAGTAGCTTATCATAAATACTCACCATTACAATTAGCTTATGGCCAAGAGCCAAATATTTCCCATCTAAGAATTTTTGGATGTGAAGTATACGTTCTAATTGCTCCACCACAACATACTAAGACGGGTCCTCAAAGGAGGTTAGGAATATACATTGGATATGATTCCCCATCAATTATTAAATATCTTGAACCTCTGACGGGTGATGTATTTACTGCACGATTTGCTGATTGTCATATTAATGAGACAAATTTTCCAACATTAGGGTGA

Coding sequence (CDS)

ATGAGAGCTAAGCTTCCTACATTGGTATGGGGACATGCTATTTTGCATGCTGCGTCACTTGCACGCATTAGGCCAGTAGCTTATCATAAATACTCACCATTACAATTAGCTTATGGCCAAGAGCCAAATATTTCCCATCTAAGAATTTTTGGATGTGAAGTATACGTTCTAATTGCTCCACCACAACATACTAAGACGGGTCCTCAAAGGAGGTTAGGAATATACATTGGATATGATTCCCCATCAATTATTAAATATCTTGAACCTCTGACGGGTGATGTATTTACTGCACGATTTGCTGATTGTCATATTAATGAGACAAATTTTCCAACATTAGGGTGA

Protein sequence

MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAPPQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG

Homology

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BLAST of Clc10G08560 vs. NCBI nr
Match: RYE23962.1 (hypothetical protein EOP45_06335 [Sphingobacteriaceae bacterium])

HSP 1 Score: 202.2 bits (513), Expect = 2.4e-48
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR KLPT +WGHAILHAA+L RIRP AYHKYSPLQLA+GQ PNISHLRIFGC VYV IAP
Sbjct: 287 MRTKLPTSIWGHAILHAAALIRIRPSAYHKYSPLQLAFGQVPNISHLRIFGCAVYVPIAP 346

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK  PQRRLGIY+GY+SPSI++YLEP TGDVFTARFADCH +E NFP LG
Sbjct: 347 PQRTKMRPQRRLGIYVGYESPSIVRYLEPQTGDVFTARFADCHFDEENFPVLG 399

[Close]

BLAST of Clc10G08560 vs. NCBI nr
Match: KYP54831.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 171 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 230

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 231 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 283

[Close]

BLAST of Clc10G08560 vs. NCBI nr
Match: KYP47392.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 211

[Close]

BLAST of Clc10G08560 vs. NCBI nr
Match: KYP43092.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 211

[Close]

BLAST of Clc10G08560 vs. NCBI nr
Match: KYP76714.1 (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 201.1 bits (510), Expect = 5.2e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 103 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 162

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 163 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 215

[Close]

BLAST of Clc10G08560 vs. ExPASy Swiss-Prot
Match: P04146 (Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 34/109 (31.19%), Postives = 53/109 (48.62%), Query Frame = 0


Query: 3   AKLPTLVWGHAILHAASLAR---IRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIA 62
           AKL    WG A+L A  L      R +     +P ++ + ++P + HLR+FG  VYV I 
Sbjct: 603 AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMWHNKKPYLKHLRVFGATVYVHIK 662

Query: 63  PPQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETN 109
             Q  K   +    I++GY+ P+  K  + +      AR  D  ++ETN
Sbjct: 663 NKQ-GKFDDKSFKSIFVGYE-PNGFKLWDAVNEKFIVAR--DVVVDETN 707

[Close]

BLAST of Clc10G08560 vs. ExPASy Swiss-Prot
Match: Q9ZT94 (Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana OX=3702 GN=RE2 PE=4 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.7e-05
Identity = 32/110 (29.09%), Postives = 48/110 (43.64%), Query Frame = 0


Query: 3   AKLPTLVWGHAILHAASLA-RIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAPP 62
           A +P   W +A   A  L  R+        SP Q  +GQ PN   L++FGC  Y  + P 
Sbjct: 622 ASVPKTYWPYAFSVAVYLINRLPTPLLQLQSPFQKLFGQPPNYEKLKVFGCACYPWLRPY 681

Query: 63  QHTKTGPQRRLGIYIGYD-SPSIIKYLEPLTGDVFTARFADCHINETNFP 111
              K   + +   ++GY  + S    L   TG ++T+R      +E  FP
Sbjct: 682 NRHKLEDKSKQCAFMGYSLTQSAYLCLHIPTGRLYTSRHV--QFDERCFP 729

[Close]

BLAST of Clc10G08560 vs. ExPASy Swiss-Prot
Match: Q94HW2 (Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana OX=3702 GN=RE1 PE=2 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 24/77 (31.17%), Postives = 34/77 (44.16%), Query Frame = 0


Query: 3   AKLPTLVWGHAILHAASLARIRPVAYHKY-SPLQLAYGQEPNISHLRIFGCEVYVLIAPP 62
           A +P   W +A   A  L    P    +  SP Q  +G  PN   LR+FGC  Y  + P 
Sbjct: 643 ASIPKTYWPYAFAVAVYLINRLPTPLLQLESPFQKLFGTSPNYDKLRVFGCACYPWLRPY 702

Query: 63  QHTKTGPQRRLGIYIGY 79
              K   + R  +++GY
Sbjct: 703 NQHKLDDKSRQCVFLGY 719

[Close]

BLAST of Clc10G08560 vs. ExPASy TrEMBL
Match: A0A4Q3EVY8 (Integrase catalytic domain-containing protein OS=Sphingobacteriaceae bacterium OX=2021370 GN=EOP45_06335 PE=4 SV=1)

HSP 1 Score: 202.2 bits (513), Expect = 1.1e-48
Identity = 91/113 (80.53%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR KLPT +WGHAILHAA+L RIRP AYHKYSPLQLA+GQ PNISHLRIFGC VYV IAP
Sbjct: 287 MRTKLPTSIWGHAILHAAALIRIRPSAYHKYSPLQLAFGQVPNISHLRIFGCAVYVPIAP 346

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK  PQRRLGIY+GY+SPSI++YLEP TGDVFTARFADCH +E NFP LG
Sbjct: 347 PQRTKMRPQRRLGIYVGYESPSIVRYLEPQTGDVFTARFADCHFDEENFPVLG 399

[Close]

BLAST of Clc10G08560 vs. ExPASy TrEMBL
Match: A0A151UD30 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_021468 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 102 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 161

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 162 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 214

[Close]

BLAST of Clc10G08560 vs. ExPASy TrEMBL
Match: A0A151RXV3 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_031006 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 99  MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 158

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 159 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 211

[Close]

BLAST of Clc10G08560 vs. ExPASy TrEMBL
Match: A0A151UBQ7 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan OX=3821 GN=KK1_020966 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 103 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 162

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 163 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 215

[Close]

BLAST of Clc10G08560 vs. ExPASy TrEMBL
Match: A0A151SJC6 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=3821 GN=KK1_001031 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 2.5e-48
Identity = 90/113 (79.65%), Postives = 99/113 (87.61%), Query Frame = 0


Query: 1   MRAKLPTLVWGHAILHAASLARIRPVAYHKYSPLQLAYGQEPNISHLRIFGCEVYVLIAP 60
           MR+KLP   WGHAILHAA L RIRP +YHK+SPLQL +G++PNISHLRIFGC VYV IAP
Sbjct: 171 MRSKLPMSTWGHAILHAAILIRIRPTSYHKFSPLQLVFGEQPNISHLRIFGCAVYVPIAP 230

Query: 61  PQHTKTGPQRRLGIYIGYDSPSIIKYLEPLTGDVFTARFADCHINETNFPTLG 114
           PQ TK GPQRRLGIY+GY+SPSIIKYLEPLTGD+FTARFADCH NE  FPTLG
Sbjct: 231 PQRTKMGPQRRLGIYVGYESPSIIKYLEPLTGDLFTARFADCHFNELIFPTLG 283

The following BLAST results are available for this feature:

BLAST of Clc10G08560 vs. NCBI nr


Match Name	E-value	Identity	Description
RYE23962.1	2.4e-48	80.53	hypothetical protein EOP45_06335 [Sphingobacteriaceae bacterium]	[more]
KYP54831.1	5.2e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP47392.1	5.2e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP43092.1	5.2e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
KYP76714.1	5.2e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]

BLAST of Clc10G08560 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P04146	3.3e-05	31.19	Copia protein OS=Drosophila melanogaster OX=7227 GN=GIP PE=1 SV=3	[more]
Q9ZT94	5.7e-05	29.09	Retrovirus-related Pol polyprotein from transposon RE2 OS=Arabidopsis thaliana O...	[more]
Q94HW2	2.8e-04	31.17	Retrovirus-related Pol polyprotein from transposon RE1 OS=Arabidopsis thaliana O...	[more]

BLAST of Clc10G08560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A4Q3EVY8	1.1e-48	80.53	Integrase catalytic domain-containing protein OS=Sphingobacteriaceae bacterium O...	[more]
A0A151UD30	2.5e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151RXV3	2.5e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]
A0A151UBQ7	2.5e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
A0A151SJC6	2.5e-48	79.65	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan OX=...	[more]

BLAST of Clc10G08560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G08560.1	Clc10G08560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding