Clc10G08550 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G08550
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	CCHC-type domain-containing protein
Location	ClcChr10: 18914197 .. 18917605 (+)
RNA-Seq Expression	Clc10G08550
Synteny	Clc10G08550

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCACCAGTTCTTAATGGGGATATGGCCTATTGGAGCCATTGTTCATGATTCCAATGGCGATGTTGTGTTCGCCATGGAGGACCACTTTCTTTTGTCCAGTTCCATTGATCTTGCAGAAGCTATTGCCATGGATGAGAGCATGATCAATGCTCTTGAAGATAGTATAACTCCACCCTAGGCTAAAATTGATTCCTTGATTATGTGGAATTGCTTGACTAAAAAATCTAGATATGCTAACAAGGTTCAAGTTCTTGTTGATTCTCTCTGCAATTTGCATGAAGGTCATTGATTCACAACTTCCTTTTTGTCAATCGTAAGTGTAATTATGTTACTTAGGCCTTAGCTTCTCATACTCGTTGTCTCAAAGTTTCAGACATTTGGCTTCAAGAGTACCATACTTCATGGGTGGATTCTATTTTACTTACTAATTTGTTTAGTTCATAAGTTCTATTGTGTTCTTTTTATGCGTTGTACTAAAAAATGGTGATGCCAAGAAGAATATCGATGTCAAATAAAATGTCTAGGTCTCTACTTTACAAAAATGTTGATATGGATGAATATTTCAATTAGTAAAACAAAAAATAAAAATAAATAAAATAGTAAATAAATATTTTACACTCTTTTAAACAAATTAAAGGAAAATTATTATAAATAGAAAAAATATCAAACATTTACAAATATAGAAAAATTTAACCGTCTATCCGCGATAGACCGTGATAGGCTGTTATCTCTCAAGCGAATCGCAGTCTATCGCTCAAGCGACAGGAGTTTATCACGGTCTATCGCTAATAGACAGTGAAACTTTTCTATATTTGTAAATAGTTTGACCCATTTTGCTATATTTGAAAACAACCCCAAATTAAAATGTTTATTATTTATAGTATATTCACATTAGTGACATTTTGTTGCTTGTTATATATATATATATATATATATATTTCATGAATTATTTACGATCTTACAAAAAATCGGTTTATCCTATATATATGTTGAACCTATGGAAATGTAAAAATAACGATGGAAATATTGACATGTCAATCAGAATTTATATCATGGATAAAACTCATGCACGTAGTACATGAATTTCCTCCCTCAAATCAACATCCACGTGCTAGTAAACATAAGAAACATATGCATGGTACAAGAGTTTTCCAATGAACTCGAGCACGTACATGAGCTTTGTTGCCATTTTTTTATAAAAAAAAACTGTTGTTCTTAGAATAATAAATGGTATTGGTAAAGTCTATAAAAAAAACAATACTTTTGTTCCAATAATTAAATTTGGTTGAATAATTTGAAAATTGATTGAAAGAAAATGAAGTTTGCCAAAAATTACAAAACAAAATTCAAAATAAGATAATTCATATGAATATTAGAACAAAATTAGATATCCATTATATAAATATGCCAAAATTAGATGTACATTATATAAATATGCTTAGTGGCTAAAGGCCATGTGTCTACTAATGACACATCCTTAGTGGCTAAAGGCCATGTGTCTACTGACACATTCTTAGTGGCTAAAGGCCATGTGTCTACTAATGCATCTTTGCGTATAAATAATGGCATAGGGTGAAGGTTCTCACTTACTGGGAGACGACTCTGAAAATTCTCAGAATCCTTCTCACAGGAGCATGAAATGGAGGCTGGTTATGGTGAGGGAGAATTTGTGCAGAGCTTTCGCCTCTTTAACTCGTTTCTCTCCTCTCTTTTGAATGGAGAAGCTTTGGACTATTTATAGGCGTCAAAAAGTTGAACTCATGATGACCTGACACCTTTATATTAAATTCCATGTCCTGCTGCGCAGACCTTTCACATCGTCGGCCCATTTGTTATGCCATGATTTGATAACGTGTTATCCTTTTGCATATTGACATGACAGCTTTTGCCCAGGCATCTGTATCTACTTTTTCTCAACGCATGGTCTCGACGCATGGGTTTCCACTTGTTCTCGCAACAGCTTCCTCTCTAGTACTTGGGTTATTCTTCTTAATCTTGTGTTAAGAACAAAAAAGCTCATAATTTTTCAGGTATTTTCTTTTGTAAATGGTGCCAACGCATGGTAATACATTTTACATAATTCAACTACCAAAATCATGCGTTTAGCTCTAAAGTTACTCTAATTAATTCAAATAATGACTATAATAACTTGTATTTCTACAAGTTATCAGTGGCCATGAAATGCAACTACCTACTTGCCAAATTGCCTTTAAATAGAGGATTTTGGTGGATATTGTAATACACACATTGGAGAGAAAAGAAGAGAAAAGATTGATGTTGAGAAACTTCATAAAATCTCACTTTCTTTATGTTAGTTTATTTTAAGTTTATTTTATTTAATTTGATTATTTTAATTACTTTTATATTATTTTATTATTTTATTATTATAATTTCTCGATTTTCGTGCTCCCGTTTTTCTGTCATTTTGCCCGTCAATTTTACAACACGTTATCAGCACAATCTCTTGTCGTTTTCCCGTAGAAGGTAGGTTTTGAAGGTATGCCATTTTCTATTTATTATAATTAGTAAATTAAACATTGTTTTGCATGCTTAGTATATATTAAATTGCTAATATAAATATAATTCTTTGTGATAGTGTTATCATGGCAAATCTTACGAAAATAGAATTTGCAGCCTTTGACATCAATGGAAATAATTATTTGTCATAGGTGCTTGATGCTGAAATACATCTAGATGCCATGAACCTAAGAGAAACAATTAAAGAGGGAAATGCAACATCCATTAAGGAAAAAGCAAAAGCTATGATTTTCCTTTGTCGTCATCTCCACAAGGGATTGAAGATGAAATATTTAACAATAAAAGATCCTTGTATCTTGTGGAAGAATTTAAAAAAGAAATATGATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTTCAAGATTTCAAATCAGTTAGTGACTACAACTCCACGTTATTTAAAATCAGTTCAAAATTGCTATTATGCAGAGAGAAAATTACTGATGCAGATATGTTGGAGAAGACATTTTCTACATTTCATGCCTCGAATATGCTCCTGCAGCAGCAATGTCAAAAGAAAGGTTTTAAACAATATTCTGAATTAATTTTATATCTTCTCATGGTTGAACAAACTAATGAGCTATTGATGAAAAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAGTCGTGGTCGTGGTCGTGACCGTGGCAGAGGAAGAAATAAATATTTTTTTCGTGGTGGTCATTCTAATCATCCAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGCTCCACAAGATAAAAATTCAAAAGATGATGAGCATAAATGCTTCCGATGCGAGATGACTAGTCACTAG

mRNA sequence

ATGATGCACCAGTTCTTAATGGGGATATGGCCTATTGGAGCCATTGTTCATGATTCCAATGGCGATGTTGTGTTCGCCATGGAGGACCACTTTCTTTTGTCCAGTTCCATTGATCTTGCAGAAGCTATTGCCATGGATGAGAGCATGATCAATGCTCTTGAAGATAGTTCTCACTTACTGGGAGACGACTCTGAAAATTCTCAGAATCCTTCTCACAGGAGCATGAAATGGAGGCTGGTTATGGTGCTTGATGCTGAAATACATCTAGATGCCATGAACCTAAGAGAAACAATTAAAGAGGGAAATGCAACATCCATTAAGGAAAAAGCAAAAGCTATGATTTTCCTTTGTCGTCATCTCCACAAGGGATTGAAGATGAAATATTTAACAATAAAAGATCCTTGTATCTTGTGGAAGAATTTAAAAAAGAAATATGATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTTCAAGATTTCAAATCAGTTAGTGACTACAACTCCACGTTATTTAAAATCAGTTCAAAATTGCTATTATGCAGAGAGAAAATTACTGATGCAGATATGTTGGAGAAGACATTTTCTACATTTCATGCCTCGAATATGCTCCTGCAGCAGCAATGTCAAAAGAAAGGTTTTAAACAATATTCTGAATTAATTTTATATCTTCTCATGGTTGAACAAACTAATGAGCTATTGATGAAAAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAGTCGTGGTCGTGGTCGTGACCGTGGCAGAGGAAGAAATAAATATTTTTTTCGTGGTGGTCATTCTAATCATCCAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGCTCCACAAGATAAAAATTCAAAAGATGATGAGCATAAATGCTTCCGATGCGAGATGACTAGTCACTAG

Coding sequence (CDS)

ATGATGCACCAGTTCTTAATGGGGATATGGCCTATTGGAGCCATTGTTCATGATTCCAATGGCGATGTTGTGTTCGCCATGGAGGACCACTTTCTTTTGTCCAGTTCCATTGATCTTGCAGAAGCTATTGCCATGGATGAGAGCATGATCAATGCTCTTGAAGATAGTTCTCACTTACTGGGAGACGACTCTGAAAATTCTCAGAATCCTTCTCACAGGAGCATGAAATGGAGGCTGGTTATGGTGCTTGATGCTGAAATACATCTAGATGCCATGAACCTAAGAGAAACAATTAAAGAGGGAAATGCAACATCCATTAAGGAAAAAGCAAAAGCTATGATTTTCCTTTGTCGTCATCTCCACAAGGGATTGAAGATGAAATATTTAACAATAAAAGATCCTTGTATCTTGTGGAAGAATTTAAAAAAGAAATATGATCATCAGAAAACAGTCATTCTTCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTTCAAGATTTCAAATCAGTTAGTGACTACAACTCCACGTTATTTAAAATCAGTTCAAAATTGCTATTATGCAGAGAGAAAATTACTGATGCAGATATGTTGGAGAAGACATTTTCTACATTTCATGCCTCGAATATGCTCCTGCAGCAGCAATGTCAAAAGAAAGGTTTTAAACAATATTCTGAATTAATTTTATATCTTCTCATGGTTGAACAAACTAATGAGCTATTGATGAAAAACCATGAATCTCGACCAACTGGAACAACACCATTCCCTGAAGTGAATGCTGTAAATTTTAATAGTCGTGGTCGTGGTCGTGACCGTGGCAGAGGAAGAAATAAATATTTTTTTCGTGGTGGTCATTCTAATCATCCAAATTTCAAAAGAACCACTCGAAATGATGATCATAAAGGAAAAGCTCCACAAGATAAAAATTCAAAAGATGATGAGCATAAATGCTTCCGATGCGAGATGACTAGTCACTAG

Protein sequence

MMHQFLMGIWPIGAIVHDSNGDVVFAMEDHFLLSSSIDLAEAIAMDESMINALEDSSHLLGDDSENSQNPSHRSMKWRLVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILWKNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADMLEKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEVNAVNFNSRGRGRDRGRGRNKYFFRGGHSNHPNFKRTTRNDDHKGKAPQDKNSKDDEHKCFRCEMTSH

Homology

[Close]

BLAST of Clc10G08550 vs. NCBI nr
Match: WP_217833168.1 (hypothetical protein, partial [Synechococcus sp. PCC 7002])

HSP 1 Score: 363.2 bits (931), Expect = 2.3e-96
Identity = 187/223 (83.86%), Postives = 198/223 (88.79%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  VLDAEIHLDAMNL ETIKEGNATSI+EKAKAMIFL  HLH+ LKM+YLTIKD  ILW
Sbjct: 20  LSWVLDAEIHLDAMNLGETIKEGNATSIQEKAKAMIFLRHHLHERLKMEYLTIKDLSILW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
           KNLK++YDHQKTVILPKARYEWMHLRLQDFKSVSDYNS LFKISSKLLLC EKITDA ML
Sbjct: 80  KNLKQRYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLLLCGEKITDAYML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           E TFSTFHASNML+QQQ ++KGFKQYSELI  LL+ EQ NELLMKNHESRPTGTTPFPEV
Sbjct: 140 ENTFSTFHASNMLMQQQYREKGFKQYSELISCLLVAEQNNELLMKNHESRPTGTTPFPEV 199

Query: 259 NAVNFNS------RGRGRDRGRGRNKYFFRGGHSNHPNFKRTT 296
           NAVNFN+      RGRGRDRGRGRN Y+FRG HSNHPNFKRTT
Sbjct: 200 NAVNFNNRGRGRGRGRGRDRGRGRNSYYFRGSHSNHPNFKRTT 242

[Close]

BLAST of Clc10G08550 vs. NCBI nr
Match: XP_022144017.1 (uncharacterized protein LOC111013806 [Momordica charantia])

HSP 1 Score: 335.1 bits (858), Expect = 6.7e-88
Identity = 172/223 (77.13%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  VLDAEIHLDAMNL ETIKE N T+ +E AKAMIFL  HLH+GLKM+YLTIKD   LW
Sbjct: 20  LSWVLDAEIHLDAMNLGETIKEENTTTSQENAKAMIFLRHHLHEGLKMEYLTIKDLLALW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
           +NLK++YDHQKTVILPKARYEWMHLRLQDFKSVSDYNS LFKISSKL LC EKITD+DML
Sbjct: 80  QNLKERYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLKLCGEKITDSDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKT+STFH SN+LLQQQ ++KGFK+YSELI  LL+ +Q NELLMKNHESRPTG TPFPE 
Sbjct: 140 EKTYSTFHVSNILLQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEA 199

Query: 259 NAVNFNS------RGRGRDRGRGRNKYFFRGGHSNHPNFKRTT 296
           NAVNFN+      RGRGRDRGRGRN + FRGG  N PNFKRTT
Sbjct: 200 NAVNFNNRGRGRGRGRGRDRGRGRNNFSFRGGRYNRPNFKRTT 242

[Close]

BLAST of Clc10G08550 vs. NCBI nr
Match: XP_028787995.1 (uncharacterized protein LOC114743980 [Prosopis alba])

HSP 1 Score: 302.4 bits (773), Expect = 4.8e-78
Identity = 162/252 (64.29%), Postives = 193/252 (76.59%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAEIHL+A  L +TIKEGN  S ++KAKAMIFL  HLH+GLK++YLTIKDP +LW
Sbjct: 20  LSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTIKDPLVLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFKSV +YNS +F+ISS+L LC EKITD DML
Sbjct: 80  NNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTFSTFHASN+LLQQQ ++KGFK+YSELI  LL+ EQ NELLM+NHESRPTG+TPFPEV
Sbjct: 140 EKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEV 199

Query: 259 NAVNFNS-----RGRGRDRGRGRNKYFFRGGHSNHPNFKRTTRNDDHKGKAPQDKNSKDD 318
           N V   S     RGRGR RGRGR +   RGG  +H   ++   ND+H  K     N+   
Sbjct: 200 NVVATESTRGHGRGRGRGRGRGRGRGRGRGGDRSH---QKWANNDEHHQK-ESSGNNNHV 259

Query: 319 EHKCFRCEMTSH 326
           E+ C+RC    H
Sbjct: 260 ENLCYRCGGKGH 267

[Close]

BLAST of Clc10G08550 vs. NCBI nr
Match: XP_028767563.1 (uncharacterized protein LOC114725246 [Prosopis alba] >XP_028771288.1 uncharacterized protein LOC114728545 [Prosopis alba] >XP_028771292.1 uncharacterized protein LOC114728549 [Prosopis alba])

HSP 1 Score: 302.0 bits (772), Expect = 6.3e-78
Identity = 161/252 (63.89%), Postives = 193/252 (76.59%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAEIHL+A  L +TIKEGN  S ++KAKAMIFL  HLH+GLK++YLT+KDP +LW
Sbjct: 20  LSWILDAEIHLNANGLGDTIKEGNQASNQDKAKAMIFLRHHLHEGLKIEYLTVKDPLVLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFKSV +YNS +F+ISS+L LC EKITD DML
Sbjct: 80  NNLKERYDHQKTVILPKARYDWMHLRLQDFKSVIEYNSAMFRISSQLKLCGEKITDEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTFSTFHASN+LLQQQ ++KGFK+YSELI  LL+ EQ NELLM+NHESRPTG+TPFPEV
Sbjct: 140 EKTFSTFHASNVLLQQQYREKGFKKYSELISCLLVAEQNNELLMRNHESRPTGSTPFPEV 199

Query: 259 NAVNFNS-----RGRGRDRGRGRNKYFFRGGHSNHPNFKRTTRNDDHKGKAPQDKNSKDD 318
           N V   S     RGRGR RGRGR +   RGG  +H   ++   ND+H  K     N+   
Sbjct: 200 NVVATESTRGHGRGRGRGRGRGRGRGCGRGGGRSH---QKWANNDEHHQK-ESSGNNNHV 259

Query: 319 EHKCFRCEMTSH 326
           E+ C+RC    H
Sbjct: 260 ENLCYRCGGKGH 267

[Close]

BLAST of Clc10G08550 vs. NCBI nr
Match: AQY61301.1 (Gag [Vitis vinifera])

HSP 1 Score: 302.0 bits (772), Expect = 6.3e-78
Identity = 157/261 (60.15%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAE+HLDAMNL  TIK+GN  S++++AKA+IFL  HLH+GLK +YLT+KDP  LW
Sbjct: 20  LSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFK+VS+YNS LFKISS+L LC EKIT+ DML
Sbjct: 80  SNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTF+TFHASN+LLQQQ +++ F +YSELI  LL+ EQ NELLM+NH+SRPTG+ PFPEV
Sbjct: 140 EKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEV 199

Query: 259 NAVNFNSRGRGRDRGRGRNK-----YFFRGGHSN---------HPNFKRTTRNDDHKGKA 318
           NA++  +RGRGR+RGRGR +       + G +SN         H      T      GK 
Sbjct: 200 NAISSQTRGRGRERGRGRGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNTETIQENGKR 259

Query: 319 PQDKNSKDDEHKCFRCEMTSH 326
            QDK  K+ E+ C+RC M  H
Sbjct: 260 LQDKPPKNHENNCYRCGMKGH 280

[Close]

BLAST of Clc10G08550 vs. ExPASy TrEMBL
Match: A0A6J1CSH6 (uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013806 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 3.2e-88
Identity = 172/223 (77.13%), Postives = 189/223 (84.75%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  VLDAEIHLDAMNL ETIKE N T+ +E AKAMIFL  HLH+GLKM+YLTIKD   LW
Sbjct: 20  LSWVLDAEIHLDAMNLGETIKEENTTTSQENAKAMIFLRHHLHEGLKMEYLTIKDLLALW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
           +NLK++YDHQKTVILPKARYEWMHLRLQDFKSVSDYNS LFKISSKL LC EKITD+DML
Sbjct: 80  QNLKERYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSALFKISSKLKLCGEKITDSDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKT+STFH SN+LLQQQ ++KGFK+YSELI  LL+ +Q NELLMKNHESRPTG TPFPE 
Sbjct: 140 EKTYSTFHVSNILLQQQYREKGFKKYSELISCLLVAKQNNELLMKNHESRPTGATPFPEA 199

Query: 259 NAVNFNS------RGRGRDRGRGRNKYFFRGGHSNHPNFKRTT 296
           NAVNFN+      RGRGRDRGRGRN + FRGG  N PNFKRTT
Sbjct: 200 NAVNFNNRGRGRGRGRGRDRGRGRNNFSFRGGRYNRPNFKRTT 242

[Close]

BLAST of Clc10G08550 vs. ExPASy TrEMBL
Match: A0A286QJ35 (Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 3.0e-78
Identity = 157/261 (60.15%), Postives = 195/261 (74.71%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAE+HLDAMNL  TIK+GN  S++++AKA+IFL  HLH+GLK +YLT+KDP  LW
Sbjct: 20  LSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFK+VS+YNS LFKISS+L LC EKIT+ DML
Sbjct: 80  SNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTF+TFHASN+LLQQQ +++ F +YSELI  LL+ EQ NELLM+NH+SRPTG+ PFPEV
Sbjct: 140 EKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEV 199

Query: 259 NAVNFNSRGRGRDRGRGRNK-----YFFRGGHSN---------HPNFKRTTRNDDHKGKA 318
           NA++  +RGRGR+RGRGR +       + G +SN         H      T      GK 
Sbjct: 200 NAISSQTRGRGRERGRGRGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNTETIQENGKR 259

Query: 319 PQDKNSKDDEHKCFRCEMTSH 326
            QDK  K+ E+ C+RC M  H
Sbjct: 260 LQDKPPKNHENNCYRCGMKGH 280

[Close]

BLAST of Clc10G08550 vs. ExPASy TrEMBL
Match: A0A438ID00 (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX=29760 GN=POLX_1841 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 156/259 (60.23%), Postives = 198/259 (76.45%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAE+HLDAMNL  TIK+GN  S++++AKA+IFL  HLH+GLK +YLT+KDP  LW
Sbjct: 20  LSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFK+VS+YNS LFKISS+L LC EKIT+ DML
Sbjct: 80  SNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTF+TFHASN+LLQQQ +++ F +YSELI  LL+ EQ NELLM+NH+SRPTG+ PFPEV
Sbjct: 140 EKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEV 199

Query: 259 NAVNFNSRGRGRDRGRGRNK---YFFRGGHSNHP-------NFKRTTRND--DHKGKAPQ 318
           NA++  +RGRGR RGRGR +     + G +SN+        + ++   N+     GK  Q
Sbjct: 200 NAISSQTRGRGRGRGRGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNNETIQENGKRLQ 259

Query: 319 DKNSKDDEHKCFRCEMTSH 326
           DK  K+ E+ C+RC M  H
Sbjct: 260 DKPPKNHENNCYRCGMKGH 278

[Close]

BLAST of Clc10G08550 vs. ExPASy TrEMBL
Match: A5B4M9 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 156/259 (60.23%), Postives = 193/259 (74.52%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAE+HLDAMNL  TIK+GN  S++++AKA+IFL  HLH+GLK +YLT+KDP  LW
Sbjct: 20  LSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYLTVKDPFTLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFK+VS+YNS LFKISS+L LC EKIT+ DML
Sbjct: 80  SNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTF+TFHASN+LLQQQ +++ F +YSELI  LL+ EQ NELLM+NH+SRPTG+ PFPEV
Sbjct: 140 EKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEV 199

Query: 259 NAVNFNSRGRGRDRGRGRNKYF---FRGGHSN---------HPNFKRTTRNDDHKGKAPQ 318
           NA++  +RGRGR RGRG  +     + G +SN         H      T      GK  Q
Sbjct: 200 NAISSQTRGRGRGRGRGXGRGXNPRYHGSYSNNSQKMKASLHHQKWNNTETIQENGKRLQ 259

Query: 319 DKNSKDDEHKCFRCEMTSH 326
           DK  K+ E+ C+RC M  H
Sbjct: 260 DKPXKNHENNCYRCGMKGH 278

[Close]

BLAST of Clc10G08550 vs. ExPASy TrEMBL
Match: A5AJ43 (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 1.2e-77
Identity = 156/259 (60.23%), Postives = 193/259 (74.52%), Query Frame = 0


Query: 79  LVMVLDAEIHLDAMNLRETIKEGNATSIKEKAKAMIFLCRHLHKGLKMKYLTIKDPCILW 138
           L  +LDAE+HLDAMNL  TIK+GN  S++++AKA+IFL  HLH+GLK +Y T+KDP  LW
Sbjct: 20  LSWILDAELHLDAMNLGATIKQGNQASLQDRAKALIFLRHHLHEGLKNEYFTVKDPFTLW 79

Query: 139 KNLKKKYDHQKTVILPKARYEWMHLRLQDFKSVSDYNSTLFKISSKLLLCREKITDADML 198
            NLK++YDHQKTVILPKARY+WMHLRLQDFK+VS+YNS LFKISS+L LC EKIT+ DML
Sbjct: 80  SNLKERYDHQKTVILPKARYDWMHLRLQDFKTVSEYNSALFKISSQLKLCGEKITEEDML 139

Query: 199 EKTFSTFHASNMLLQQQCQKKGFKQYSELILYLLMVEQTNELLMKNHESRPTGTTPFPEV 258
           EKTF+TFHASN+LLQQQ +++ F +YSELI  LL+ EQ NELLM+NH+SRPTG+ PFPEV
Sbjct: 140 EKTFTTFHASNVLLQQQYRERRFTKYSELISCLLVAEQNNELLMRNHQSRPTGSEPFPEV 199

Query: 259 NAVNFNSRGRGRDRGRGRNK---YFFRGGHSN---------HPNFKRTTRNDDHKGKAPQ 318
           NA++  +RGRGR RGRGR +     + G +SN         H      T      GK  Q
Sbjct: 200 NAISSQTRGRGRGRGRGRGRGRNPRYHGSYSNNSQKMKASLHHQKWNNTETIQENGKRLQ 259

Query: 319 DKNSKDDEHKCFRCEMTSH 326
           DK  K+ E+ C+RC M  H
Sbjct: 260 DKPPKNHENNCYRCGMKGH 278

The following BLAST results are available for this feature:

BLAST of Clc10G08550 vs. NCBI nr


Match Name	E-value	Identity	Description
WP_217833168.1	2.3e-96	83.86	hypothetical protein, partial [Synechococcus sp. PCC 7002]	[more]
XP_022144017.1	6.7e-88	77.13	uncharacterized protein LOC111013806 [Momordica charantia]	[more]
XP_028787995.1	4.8e-78	64.29	uncharacterized protein LOC114743980 [Prosopis alba]	[more]
XP_028767563.1	6.3e-78	63.89	uncharacterized protein LOC114725246 [Prosopis alba] >XP_028771288.1 uncharacter...	[more]
AQY61301.1	6.3e-78	60.15	Gag [Vitis vinifera]	[more]

BLAST of Clc10G08550 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G08550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CSH6	3.2e-88	77.13	uncharacterized protein LOC111013806 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A286QJ35	3.0e-78	60.15	Gag OS=Vitis vinifera OX=29760 GN=Gag PE=4 SV=1	[more]
A0A438ID00	1.2e-77	60.23	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Vitis vinifera OX...	[more]
A5B4M9	1.2e-77	60.23	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_015758 PE=4 SV=1	[more]
A5AJ43	1.2e-77	60.23	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_006175 PE=4 SV=1	[more]

BLAST of Clc10G08550 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 291..325
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 245..260
None	No IPR available	PANTHER	PTHR33325	ZINC FINGER, CCHC-TYPE-RELATED	coord: 75..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G08550.1	Clc10G08550.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005488	binding