Clc10G08460 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAGCATATAGTCAAGATTTTGACACTGTTGGTGGCCGTATCAGCTTTGTGGATTGGCCTCTTGCAAACCTCTATAATACCACATGGCCATGCTTGGTTGGTGAGTTACCATTCAGTCATTGTTTTCTTATAATCCTTCATATTCATTTTCATCATTTTACCCACGCATTGTTGCTTACTTTGCGTGTCTTGTTACTCCAGCTACCCATCTATTTTATTGTCTCCCTGGGATGTTATGGTCTATTAATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTAGAGAAGGACTGTTGCTACAGAAGGTACTGCTTCCCTTTTATTCTCACGCACTTTCATATCATACAATAAATGGCCCCTCCTTCTGTCTCATTTCACCTTTCCTTTGGAATGTTCTCTGATTTTCCATATCCAAGGTATTACTAAGGAAGTTGGTGGTAAATAATTCAACTCCACCGACTTCAACAGCAATGGAGTTCACTATTGAGATTTGCTCATTTATCGATGAGCTTATTTTTCTCTCTTTTGTACATTTATCGAGGAACTTTAACTAAATACAGACTTCCTAAACACATCCTTCCGAACTTTAACATGTTAACTCAAGACTTCAGAACTTAACTTAGTGCCCTAAACACCTCCTAAGTCAATTTCATAACATACAACAGATTGTCCTATTTAACCAAAGTGAGCATAGTTTAGGGTAATTGACATATAATCTTTTCCTTGTGGCTAGATGTTTAAATCTCCATAACCCCAGTTGTTATACTGAAAAACGAATTATCTCATCTCTCTCTCTCTCTCTGGAATGTTTGAATTTCTATATTTATCATTATTAAGATTGAAAGATGTACAAACATCTCACCTTGAGTTCCTTTTGTAGGACATTGATGAGGCCAAAGAGTATCTTAAGCAAAAAGGGGTTGACATAAATTCTAATTGACAGACTTCGCAATCCTTTGCCTTCTCTCCTCCTCTTTATCAGATTTCTGTTTGTTTGATTACGGTGAAGAACACTTCATCCATCTCAAAGAGCCTTTTTTATTTGAATCCCTTGTGAAAGGCAGTGAATGTGGATTCATGTATAGAACAGAATTGTTTCTCTATACCTGTCAGTTGGTAACATAATCTTTCATTTATAAGCAGGGGGCAGCAAATCTCTCTCCTCTATTTGTTTCCATCTTTTATACGTTTCTCACGAATATAATTGTATTTTTAGTCCACTTTTGTATGTTCACCTCAAGTTTGATTATTGTCTTGCTAGTGACCAAGAAGTTTGTCGTTCGAATCTCCATTTTTATTACTAGAAAAAACTTGAGGATAAGTGCATTTAGTTCTTAATATTAAATTGTCCATCTGTTCTAAAAAATAGGTTTAATAGGGAGCCTTTAATAATAATAAAAAAAAACTATTAAATTTAAAAAGAAAAATCTGAAGATTGCATGACATGGGTAAGATGGCTTGAATTTTTTTTTTTTTCCTTCTCTCCTCTTTCTCCCTCTCTTTTTCTCTCTCAATCTCTTCTCACTTTTGCTCTCTTTTACCTCTACACTACAGTACCAAATCTTCCAAAAAGAAATTCAAGAGAAAAAAAAAGCTTAATCTAAAACTCCAATTAATCACTTCATCCTCAAAGAGAAAACTCCTCGATAGAAAACCAAAATTACTTCATTCAATAAAGTGGCCACTGATTCTTGGGAAAATGCAAACTTATAAATGGGGTTTTCGAAAAAAATGCTAGTAAAAGTAAAAATTCAGAGAAGACGGCGAGGGGAAGTTATGGGTAAAGGGATGGGTTGTTGAGGTCGAACAGAGGAGCCGAATGCAAGGAAGAGAGGGGACGGGGATGAGGGAAGTTGAAGAACAGAGAGATACATTGCTTGTGATGCCAATAAAAGGGCCTTCCAATTTATTGATGCATTCCATTTTCTTTGTCTATAGTTTCATCGATTGTTCTCCATTTCTACGTGGGGAGATGGAGTTTGATGGCCGATCGTTTTAA ATGAAGCATATAGTCAAGATTTTGACACTGTTGGTGGCCGTATCAGCTTTGTGGATTGGCCTCTTGCAAACCTCTATAATACCACATGGCCATGCTTGGTTGCTACCCATCTATTTTATTGTCTCCCTGGGATGTTATGGTCTATTAATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTAGAGAAGGACTGTTGCTACAGAAGGACATTGATGAGGCCAAAGAAGAAGACGGCGAGGGGAAGTTATGGGTAAAGGGATGGGTTGTTGAGGTCGAACAGAGGAGCCGAATGCAAGGAAGAGAGGGGACGGGGATGAGGGAAGTTGAAGAACAGAGAGATACATTGCTTGTGATGCCAATAAAAGGGCCTTCCAATTTATTGATGCATTCCATTTTCTTTGTCTATAGTTTCATCGATTGTTCTCCATTTCTACGTGGGGAGATGGAGTTTGATGGCCGATCGTTTTAA ATGAAGCATATAGTCAAGATTTTGACACTGTTGGTGGCCGTATCAGCTTTGTGGATTGGCCTCTTGCAAACCTCTATAATACCACATGGCCATGCTTGGTTGCTACCCATCTATTTTATTGTCTCCCTGGGATGTTATGGTCTATTAATGGTTGGAATCGGTCTAATGACATTTCCAACTTGCCCTAGAGAAGGACTGTTGCTACAGAAGGACATTGATGAGGCCAAAGAAGAAGACGGCGAGGGGAAGTTATGGGTAAAGGGATGGGTTGTTGAGGTCGAACAGAGGAGCCGAATGCAAGGAAGAGAGGGGACGGGGATGAGGGAAGTTGAAGAACAGAGAGATACATTGCTTGTGATGCCAATAAAAGGGCCTTCCAATTTATTGATGCATTCCATTTTCTTTGTCTATAGTTTCATCGATTGTTCTCCATTTCTACGTGGGGAGATGGAGTTTGATGGCCGATCGTTTTAA MKHIVKILTLLVAVSALWIGLLQTSIIPHGHAWLLPIYFIVSLGCYGLLMVGIGLMTFPTCPREGLLLQKDIDEAKEEDGEGKLWVKGWVVEVEQRSRMQGREGTGMREVEEQRDTLLVMPIKGPSNLLMHSIFFVYSFIDCSPFLRGEMEFDGRSF Homology
BLAST of Clc10G08460 vs. NCBI nr
Match: KAG6577298.1 (Dolichol-phosphate mannose synthase subunit 3, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 151.0 bits (380), Expect = 8.6e-33 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. NCBI nr
Match: XP_022929185.1 (dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929186.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929187.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata] >XP_022929188.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita moschata]) HSP 1 Score: 151.0 bits (380), Expect = 8.6e-33 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. NCBI nr
Match: XP_022985162.1 (dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985164.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985165.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >XP_022985166.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita maxima] >KAG7015388.1 Dolichol-phosphate mannose synthase subunit 3 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 151.0 bits (380), Expect = 8.6e-33 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. NCBI nr
Match: XP_023553075.1 (dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023553076.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023553077.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo] >XP_023553078.1 dolichol-phosphate mannose synthase subunit 3-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32 Identity = 74/77 (96.10%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. NCBI nr
Match: XP_022941634.1 (dolichol-phosphate mannose synthase subunit 3-like isoform X1 [Cucurbita moschata]) HSP 1 Score: 150.2 bits (378), Expect = 1.5e-32 Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy Swiss-Prot
Match: Q8LEQ4 (Dolichol-phosphate mannose synthase subunit 3 OS=Arabidopsis thaliana OX=3702 GN=DPMS3 PE=1 SV=1) HSP 1 Score: 128.6 bits (322), Expect = 6.0e-29 Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy TrEMBL
Match: A0A6J1J444 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111483250 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy TrEMBL
Match: A0A6J1EME7 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111435858 PE=3 SV=1) HSP 1 Score: 151.0 bits (380), Expect = 4.2e-33 Identity = 75/77 (97.40%), Postives = 76/77 (98.70%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy TrEMBL
Match: A0A6J1FU86 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 7.1e-33 Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy TrEMBL
Match: A0A6J1FP02 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita moschata OX=3662 GN=LOC111446935 PE=3 SV=1) HSP 1 Score: 150.2 bits (378), Expect = 7.1e-33 Identity = 72/77 (93.51%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Clc10G08460 vs. ExPASy TrEMBL
Match: A0A6J1JY89 (Dolichol-phosphate mannosyltransferase subunit 3 OS=Cucurbita maxima OX=3661 GN=LOC111488551 PE=3 SV=1) HSP 1 Score: 149.1 bits (375), Expect = 1.6e-32 Identity = 71/77 (92.21%), Postives = 77/77 (100.00%), Query Frame = 0
BLAST of Clc10G08460 vs. TAIR 10
Match: AT1G48140.1 (dolichol-phosphate mannosyltransferase-related ) HSP 1 Score: 128.6 bits (322), Expect = 4.3e-30 Identity = 61/77 (79.22%), Postives = 69/77 (89.61%), Query Frame = 0
BLAST of Clc10G08460 vs. TAIR 10
Match: AT1G48140.2 (dolichol-phosphate mannosyltransferase-related ) HSP 1 Score: 119.8 bits (299), Expect = 2.0e-27 Identity = 57/80 (71.25%), Postives = 66/80 (82.50%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
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