Clc10G08290 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G08290
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description50S ribosomal protein L29, chloroplastic-like
LocationClcChr10: 18384193 .. 18387101 (-)
RNA-Seq ExpressionClc10G08290
SyntenyClc10G08290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AACAATAGAAGTGGCCGATAGCTTATCTTCTTCTTCAATAGCCCGCTGAGTTCTTCATCTTCTTCCTCAAGCGCTGTGGCTGAGCGAAACCACACTGTCCACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGGTACTTCTTTTCCTCCTTGATGGATTCTTAGTTAATTTTGAGTTCAATAGAAATGTGGCTATTATGTTCGTCTCAAACATATACGTCTTACCGTCTACTATCCTCCACATTTTTGCTTATCTGGTGCTAAATTTATTGTTTGGATTAAATTTTGGAGCTCAATGGTTAGTAATGGGGATTTGTGGCTGTTGGTATCTAAGATTATTGGCTATTGTTTGCTGTCAAAAGAGAAGAAATGTAGGAATAAATAAAATCTGCGGAGTAAAATGATTCTAGAACCATATATTTTTGTGGGAATCAAGTGAAGATGCAGATTTGCGTTCACAATCCAGAGATATTAACCGAAACATTATTTCACCATGTTGGGAAATTGTTACAAAAGTTGCATTTAGAGGAAGATAGAGCCAGTTGGAATCAGAAAATGTAATTGAAATTGGGATTTCTAACGCTAACTTCATATAACTCCAAATATAACTCATTAGATACAGCTCCCTCATAGATTTTGCAATTTTGATAAGGTTAGCATCGTCTTCTAAAGACTCTTAATGTCTTCATGCTAACATTTTGTTTAAGATTCCCAAAACGCCTGAAGCTTGAATGGGTCTATGAATTTGGAAATCATAATTCCATTCGGGTTCAGAACAACTTGTCTTTTTATATGAAGTTGGTTAATGGGAAAGCTCAACCTATTCTGATCCATGGAAGCATCACAATTTTTAATGCATAAAAGAGAGATTTAGCCTTCTCATGACTTTTATACCAAAATGTCTGTATGCTTGGTGCTTAGTATGCATATCGGAATTATCTGCTGGGGTTCTCTCTGTTACCCCCCATTCATGAGATCGAAAAGATCGTCAAGATTTCGTGATCTGCTGCCAAACCTATTCCTTCCACTATTTTAGTAGGGTAATATCCCAGCTATAATAGCAATAGGATATAGGTGAGACTAGAGACTGATGGGTCTTAGCGATTCCCTTCCCATAAAAAGGATCATTGCCAACATATTCTCTAGCAAAAGAAATGACCTAGACTAGACCTCTTCTATCGCATCAAGAGGAAATCCAATCCTGCATTTGAGAAAGTTTAGCTATGCCGATAACTCTTTCAAAGGTGGCTCCTGATTAATTGTTTGATTTCCAATAGAAAGAGTCTGAGACTTCCTTGAGTGTAGTGAACCAAAGCCTTGAATGATGAGAAGTTGAATAGTTTATTTACACATTATAAATTTAGCAAGACTGGCAGTTTTTTAGAACTCGCTTATGATCATGATGGAGTTTAACACTGTAATAGTGGTAAGACATTTTGCATCTATGGTCTAATCCCATGGCTTCATGATAACGTCTTGAGTTGTTTGTAGTTACCCTCCAAAGTCTTGGTTCAAAGCCTCCAACTAGGTAACTTAGTACTTGGATTTTGTCTCCGGTGTCTCCTTTAATAAGGATTATTCAATGAGGCCGCCACAATGTAGTTGCTGTTAATAACCAATTCAACGAGATCCAGTAATCTGCAGTCCCTTAATATCCACTTCATATAAATTTGAACTATTTCTCCCTCTACATCCAAAAGTGAAAAAGTAGGGGTCCCACTAAATAATTTCTCCACCATCGAACCGGGTGAAGCCTTCTTGGAGCTTAGTGGTGTGGGTCATGAACATAGGATTGGGACTTGATAATCCCAGTTCTCAATAAAGTGGGTGGAAAATTCTCAGCAACACAATATTGCAGAGATCGATTGATGTATATGCAGTAGTATGCTGACGTGGGACAATCAGGAAGTTTAATTATATATTGCTTCTCTTCTCTTTAGTATTATTATTTATCTTCACATATTTCAGATTGCAACAACTTGGCCAATACATCCAATGTTTGGACTTGCCTAACAACTTTCTTTTCGTCATGGAGCATCAAACGATTAATGTAACTTGGAGTTTTAAACCATTTGTTGTTGTTGTTTGTCCGATGACAGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCTCAGATAAGCTCTCATCCAATGTTGTAGCTTTATGAGTTTGAAGTTGTTGAGAATGCTATTTAAACAACTTTTTAGAAAATATTTTTTCTTTCTCTCTAAAAATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTCATATGCTTTCTGTTCCATTTCACAGGCTTTCAATTGATTTTAGGTTGAATTTAAGTTTGATCCCCAGACTCAAAGGTCTCTAATATATAACAGGTCCCTCCACTCAGGACTATGAACCACAATAAAAATTAAGGGGTCTATTAAATATG

mRNA sequence

AACAATAGAAGTGGCCGATAGCTTATCTTCTTCTTCAATAGCCCGCTGAGTTCTTCATCTTCTTCCTCAAGCGCTGTGGCTGAGCGAAACCACACTGTCCACAAACTCTGAAGATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGATCCAATCTCAGATAAGCTCTCATCCAATGTTGTAGCTTTATGAGTTTGAAGTTGTTGAGAATGCTATTTAAACAACTTTTTAGAAAATATTTTTTCTTTCTCTCTAAAAATTCTGATTCTTGTACTTAGCTTATGCACAAATGGAAATAGATTTCGAGTGGATCATGTTGAATTCATATGCTTTCTGTTCCATTTCACAGGCTTTCAATTGATTTTAGGTTGAATTTAAGTTTGATCCCCAGACTCAAAGGTCTCTAATATATAACAGGTCCCTCCACTCAGGACTATGAACCACAATAAAAATTAAGGGGTCTATTAAATATG

Coding sequence (CDS)

ATGATAAACCTTTCAATTGCTTCGCCTTCGACCGTTTCTATCCCTTCAAAAGTTCTCTACTCGACCTCCAAATCCTCCTTCAATGGCCTTCAAATCCGTTTCCCATTTTCGTTTCGCGTTCCTCCTAAAACAGCATGTACTGGAGGTCGTAATTCCCCGGTGGTAATGATGGCGAAGAGGGAGGAGGAATTGAAGGAAATCAGAGCGAAAACTACTGAGGAAATAAATGAAGAGGTCGTCGATCTTAAGGGTGAACTTCTTATGCTTCGGCTTCAAAAATCTGCCCGCAATGAGTTTACGTCTAGCGAATTCCGCCGCATGCGCAAACGGATTGCTCGGATGCTAACAGTAAAACGCGAAAGAGAGATTGAAGAGGGAGTGGGCAAAAGGCTGTCAAGAAAATTAGATAGAAAGTGGAAGAAAAGTATTGTTGTCAGACCACCTCCATCGCTGAAGAAGTTGCGAGAGGAAGAAGCAGCAGCTGAAGAAGCTGAGAAATCTGCTTGA

Protein sequence

MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Homology
[Close]
BLAST of Clc10G08290 vs. NCBI nr
Match: XP_038903244.1 (50S ribosomal protein L29, chloroplastic [Benincasa hispida])

HSP 1 Score: 290.8 bits (743), Expect = 7.5e-75
Identity = 162/168 (96.43%), Postives = 163/168 (97.02%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPSTVSIP KVL STSKSSFNGLQIRFPFSFRVPPKTACTGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSTVSIPLKVLTSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRAK+TEEI EEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKSTEEIKEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. NCBI nr
Match: KAG6577307.1 (50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015397.1 50S ribosomal protein L29, chloroplastic [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 156/168 (92.86%), Postives = 162/168 (96.43%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           M+NLSIASPS+V+IP+K L STSKSSFNGLQIRFPFSFRVPPK ACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Clc10G08290 vs. NCBI nr
Match: XP_022985118.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita maxima])

HSP 1 Score: 284.6 bits (727), Expect = 5.4e-73
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPS+V+IP+K L STSKSSFNGLQIRFPFSFRVPPK AC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Clc10G08290 vs. NCBI nr
Match: XP_022941582.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia] >KAG7031295.1 50S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 282.7 bits (722), Expect = 2.0e-72
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPS+VS PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. NCBI nr
Match: XP_023531622.1 (50S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 282.0 bits (720), Expect = 3.5e-72
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPS+VS PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSLVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match: Q9FJP3 (50S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL29 PE=1 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 5.2e-47
Identity = 111/168 (66.07%), Postives = 135/168 (80.36%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNSP-VVMM 60
           M++LSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEF SS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

[Close]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match: P82248 (50S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 159.5 bits (402), Expect = 3.4e-38
Identity = 92/148 (62.16%), Postives = 115/148 (77.70%), Query Frame = 0 

Query: 23  SKSSFNGLQ---IRFPFSFRVPPKTACTGGRNSPVVMMAKREEELKEIRAKTTEEINEEV 82
           +KSSF+GL+   +    S R+  +T       S VV+M K+E+ELKE+R KT E++NEE+
Sbjct: 26  TKSSFHGLRLPSVNLSSSLRLRVQTP-----PSSVVVMVKKEDELKELRTKTNEQLNEEI 85

Query: 83  VDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIEEGVGKRLSRKLDRKW 142
           + LKGEL MLRLQ+SAR  F  S+F RMRKR+ARMLTVKREREIE+GVGKRLSRKLD+ W
Sbjct: 86  LQLKGELFMLRLQRSARENFKPSDFGRMRKRVARMLTVKREREIEQGVGKRLSRKLDKAW 145

Query: 143 KKSIVVRPPPSLKKLREEEAAAEEAEKS 168
           K+SIVVRPPPSLKKL+E+  A  EAEK+
Sbjct: 146 KRSIVVRPPPSLKKLQEKATAEAEAEKA 168

[Close]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match: Q9SWI6 (50S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 2.7e-35
Identity = 81/108 (75.00%), Postives = 96/108 (88.89%), Query Frame = 0 

Query: 50  RNSPVVMMAKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRK 109
           R + +V MAKRE+EL+EIRA TTE++ EEVVDLKGEL +LRL++SAR EF +SEF RMRK
Sbjct: 54  RAAAMVAMAKREQELEEIRAMTTEQMEEEVVDLKGELFLLRLKRSARQEFKNSEFSRMRK 113

Query: 110 RIARMLTVKREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREE 158
           RIARMLTVKREREIE+G+ KRLSRKLDRKWK+SIVVRPPPSL+  +EE
Sbjct: 114 RIARMLTVKREREIEQGINKRLSRKLDRKWKQSIVVRPPPSLRGNKEE 161

[Close]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match: Q49ZG0 (50S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229 / NCIMB 8711 / NCTC 7292 / S-41) OX=342451 GN=rpmC PE=3 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 2.5e-04
Identity = 30/62 (48.39%), Postives = 38/62 (61.29%), Query Frame = 0 

Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +      ++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 EG 127
           +G
Sbjct: 64  QG 65

[Close]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match: Q4L8A6 (50S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=279808 GN=rpmC PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 5.5e-04
Identity = 30/61 (49.18%), Postives = 37/61 (60.66%), Query Frame = 0 

Query: 65  KEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKREREIE 124
           KEIR  TT EI E++   K EL  LR Q +      ++  R +RK IAR+ TV REREIE
Sbjct: 4   KEIRDLTTSEIEEQIKSSKEELFNLRFQLATGQLEETARIRTVRKTIARLKTVAREREIE 63

Query: 125 E 126
           E
Sbjct: 64  E 64

[Close]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match: A0A6J1JCM6 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111483200 PE=3 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.6e-73
Identity = 157/168 (93.45%), Postives = 161/168 (95.83%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPS+V+IP+K L STSKSSFNGLQIRFPFSFRVPPK AC GGRNSPVVMMAKR
Sbjct: 1   MINLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSFRVPPKAACIGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE AEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEAAEKSA 168

[Close]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match: A0A6J1FMW5 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111446894 PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 9.9e-73
Identity = 157/168 (93.45%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPS+VS PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRNS VVMMAKR
Sbjct: 1   MINLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match: A0A6J1IQR3 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111477475 PE=3 SV=1)

HSP 1 Score: 281.6 bits (719), Expect = 2.2e-72
Identity = 156/168 (92.86%), Postives = 160/168 (95.24%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           M+NLSIASPS+VS PSK L STSKSSFNG QIRFPFSFRVPPKTA TGGRNS VVMMAKR
Sbjct: 1   MMNLSIASPSSVSFPSKFLSSTSKSSFNGRQIRFPFSFRVPPKTASTGGRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIR KTTEEINEEV+DLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRTKTTEEINEEVIDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWK+SIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKRSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match: A0A6J1EMX4 (50S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111435958 PE=3 SV=1)

HSP 1 Score: 276.6 bits (706), Expect = 7.1e-71
Identity = 151/164 (92.07%), Postives = 158/164 (96.34%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           M+NLSIASPS+V+IP+K L STSKSSFNGLQIRFPFS RVPPK ACTGGRNSPVVMMAKR
Sbjct: 1   MMNLSIASPSSVAIPAKFLSSTSKSSFNGLQIRFPFSCRVPPKAACTGGRNSPVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELK+IRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKDIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEA 165
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEE AAE++
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEEAAEKS 164

[Close]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match: A0A6J1C3N4 (50S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111008086 PE=3 SV=1)

HSP 1 Score: 272.7 bits (696), Expect = 1.0e-69
Identity = 155/168 (92.26%), Postives = 156/168 (92.86%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYSTSKSSFNGLQIRFPFSFRVPPKTACTGGRNSPVVMMAKR 60
           MINLSIASPSTVS+PS VL STSKSSF GLQIR PFS RV  KT C G RNS VVMMAKR
Sbjct: 1   MINLSIASPSTVSLPSTVLSSTSKSSFIGLQIRSPFSVRVAAKTTCAGSRNSSVVMMAKR 60

Query: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTVKRE 120
           EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEF SSEFRRMRKRIARMLTVKRE
Sbjct: 61  EEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFKSSEFRRMRKRIARMLTVKRE 120

Query: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 169
           REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA
Sbjct: 121 REIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAEKSA 168

[Close]
BLAST of Clc10G08290 vs. TAIR 10
Match: AT5G65220.1 (Ribosomal L29 family protein )

HSP 1 Score: 188.7 bits (478), Expect = 3.7e-48
Identity = 111/168 (66.07%), Postives = 135/168 (80.36%), Query Frame = 0 

Query: 1   MINLSIASPSTVSIPSKVLYS--TSKSSFNGLQIRFPFSFRVPPKTACTGGRNSP-VVMM 60
           M++LSIA+P T +I  +   S  ++ SSF+G++I+   S RVP     +     P VVMM
Sbjct: 1   MLSLSIATPGTAAIFRRGTASATSTSSSFHGVRIQHQVSARVPAAATISSSSPKPSVVMM 60

Query: 61  AKREEELKEIRAKTTEEINEEVVDLKGELLMLRLQKSARNEFTSSEFRRMRKRIARMLTV 120
           +KRE ELKEIR+KTTE++ EEVVDLKGEL MLRLQKSARNEF SS+FRRM+K++ARMLTV
Sbjct: 61  SKREAELKEIRSKTTEQLQEEVVDLKGELFMLRLQKSARNEFKSSDFRRMKKQVARMLTV 120

Query: 121 KREREIEEGVGKRLSRKLDRKWKKSIVVRPPPSLKKLREEEAAAEEAE 166
           KREREI+EG+ KRLSRKLDR+WKKSIV RPPPSLKKL+EEEAA E AE
Sbjct: 121 KREREIKEGIKKRLSRKLDRQWKKSIVPRPPPSLKKLQEEEAAEEAAE 168

The following BLAST results are available for this feature:
BLAST of Clc10G08290 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903244.17.5e-7596.4350S ribosomal protein L29, chloroplastic [Benincasa hispida][more]
KAG6577307.15.4e-7392.8650S ribosomal protein L29, chloroplastic, partial [Cucurbita argyrosperma subsp.... [more]
XP_022985118.15.4e-7393.4550S ribosomal protein L29, chloroplastic-like [Cucurbita maxima][more]
XP_022941582.12.0e-7293.4550S ribosomal protein L29, chloroplastic-like [Cucurbita moschata] >KAG6600658.1... [more]
XP_023531622.13.5e-7293.4550S ribosomal protein L29, chloroplastic-like [Cucurbita pepo subsp. pepo][more]
BLAST of Clc10G08290 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FJP35.2e-4766.0750S ribosomal protein L29, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL2... [more]
P822483.4e-3862.1650S ribosomal protein L29, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL29 P... [more]
Q9SWI62.7e-3575.0050S ribosomal protein L29, chloroplastic OS=Zea mays OX=4577 GN=RPL29 PE=2 SV=1[more]
Q49ZG02.5e-0448.3950S ribosomal protein L29 OS=Staphylococcus saprophyticus subsp. saprophyticus (... [more]
Q4L8A65.5e-0449.1850S ribosomal protein L29 OS=Staphylococcus haemolyticus (strain JCSC1435) OX=27... [more]
BLAST of Clc10G08290 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1JCM62.6e-7393.4550S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1FMW59.9e-7393.4550S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1IQR32.2e-7292.8650S ribosomal protein L29, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC... [more]
A0A6J1EMX47.1e-7192.0750S ribosomal protein L29, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=L... [more]
A0A6J1C3N41.0e-6992.2650S ribosomal protein L29, chloroplastic OS=Momordica charantia OX=3673 GN=LOC11... [more]
BLAST of Clc10G08290 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G65220.13.7e-4866.07Ribosomal L29 family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 151..168
NoneNo IPR availablePANTHERPTHR1091660S RIBOSOMAL PROTEIN L35/50S RIBOSOMAL PROTEIN L29coord: 1..168
NoneNo IPR availablePANTHERPTHR10916:SF1SUBFAMILY NOT NAMEDcoord: 1..168
NoneNo IPR availableCDDcd00427Ribosomal_L29_HIPcoord: 65..121
e-value: 1.9161E-15
score: 64.8163
IPR001854Ribosomal protein L29/L35PFAMPF00831Ribosomal_L29coord: 65..121
e-value: 8.0E-14
score: 51.4
IPR001854Ribosomal protein L29/L35TIGRFAMTIGR00012TIGR00012coord: 66..121
e-value: 2.8E-15
score: 54.0
IPR001854Ribosomal protein L29/L35HAMAPMF_00374Ribosomal_L29coord: 62..121
score: 13.325941
IPR036049Ribosomal protein L29/L35 superfamilyGENE3D1.10.287.310coord: 63..126
e-value: 1.3E-14
score: 55.9
IPR036049Ribosomal protein L29/L35 superfamilySUPERFAMILY46561Ribosomal protein L29 (L29p)coord: 64..124

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G08290.1Clc10G08290.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome