Clc10G07504 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G07504
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionReverse transcriptase
LocationClcChr10: 11923361 .. 11927721 (+)
RNA-Seq ExpressionClc10G07504
SyntenyClc10G07504
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGTGAGTGAGAGATTGGGAGTTGGTGCTAGCGAGAGCTGTAGAGTTGTGTCGCTGGGTCGTGGATCTGACAATACTGAGGAAGTGAGCGAAAGGGAAGGACTAAAAAGAGCTTTATCACTAGATCGTGGGTCTGACGGTACTAAGGAAGTGAGCGGGAGGTTGGGACCAGCAAGAGTTATGTCACTGGGTCGTGGGTCTGTAGGTACCGAGGAAGCGAGTGAGAGGAGGGGACTAGCGAGAGCTGTGTCGATAGATCCTGGGTCTATCAATACAGAAGGAGTGAGCGAGAGTATGGGAGTTGGTGCTAGTGAGAGGCGGAAAGTTGGGCTAGTTTGCAATGTGGGCTTGTTGCGGAACCTATCTTGGTCTGGTTTGGGGAATGATAGGTTGTTGGCATCCAGTCCCAGTGAATCAAATGGAGTCCATAAGCCGCTTGTCTGGGTCTCGCCTATTTAGGGTCAGTTCATGTCATCATGAGAGCCTATCAACATGTAAGTGGTTCTCCCTATTATGTGCTCTGAAATCTGATGAGTTGTTATATACTCTGCCTAAGATGGTGGAAGATGTGGTGGTAGTTGAACCATTTGAGGAGGTGCTGAACGTGGGGTGTTGTCTATGGGAGAACTCTTTGGTTGGTCAATTTATGGATGCTACCTTGCCTTATATTGTCATTCAATGCTTCGTTACCCGTATATGGGGTAAGGTTGAGATGCTGACGATAACTCTGATGGAGAATGGCCTTATTATTTTCCAGTTCTAAAGGCATTCGGCCTTATTAAATGCACAAATAAATTTAATTTAATTAAAACATACATTTTAAATGCATAATTAATTAAACACACTAAAGTGGACTAGTTTTGGCATATAATGGCTTAAAAAACAGCTAAATTATTACAATTGTAATTGGAAAACACCCTCGAACCGACCCCGAACACTTCGAACCGGCCTGAACAGAGTCAAGACCACTTGCATCGAACCTCTAATGATGAAAATCGGGTTGAACTGGCTGAAAACCAGCTGAACTGGAGGGAAATAGCTAAACCGGACCGCATCTTCTTTAACTCACATGTTTCTGGAAAAAGAAATCAACAACGTCGCGACGCTCCACAGCACAAGGTGCTGCTGCTCCTCGATACTGCTTGTCGACTTCTCCAATTTCTCCAAATTATAGCCTAATTTCAACTCTAATGACGCCAATAAAATTACAGACACTTCTTAACTCATTAGAGACCACAAACAAGTGACCAATTACAACAATTAAGCAACAACAAAGCTGAATTAGATGCCAAAACCAGAAAAAACCAAACTAAAACCACAACATTAATCACTTGAACTTGCACCCACCAAGCTCAAATTGATGTAAATTGATTGCATTAATCATGCTCTAATACCATTTGAAGGAGTTAGCAACATAGCAGCGGAAGTAATCAAGATCTAAAGAACTATAATTACATCAATTTTGAAGATTAAACAATGCTGATACCAAATGATAAGTGCCCGCGATGTTAGTTGGATATAAAGTTAGAGATCCTTCTAGTATCCTTGCAAACACTCACAAAGAAAGCTAACTTAGATGAAACTTAGAATCTATGATGGTTGCTCTTAGATCCTAAGACAACTCGCTCCAAAATTAGGTTAATCAAGACTAATCCAATGAATTGATTTAAGGTCGCTTTTGGAACTTTTGGATTAGTTAGAAGCACCCTAGAATGCTTAGGTAAGTAGAACTCTACCGATTGGGTTTGTTCTGCTTGTGTGTGAGCATGTTGCCTGATTTATTTTTATTATCATATAAGTATGATTGGACGTGAACTTGTGAATTGTAACCCATATAAGTATGATTGGATGTGAACTTGTGAATTGTAACCCATGTTTGCTTAATATGTGATTTTGCGAGGTATGTTTAAGTATGCGGCCTTATGTGCGATATGTGGTTGTCATAACGTAAGGTAGTAGGTGGGATTCCTAAAGTATGTTGGGACAAGCATCGAGGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGACGGGTTCTAGGATGAGCATTGAGACCTTGGGTACAAATGGTCAAGGGTCAATGTAGCATAGAGTCATCGAGCCCTTGGGTACAAATGGCCAAGGATCGATGTAGAGCTCGGGGCCTTGGGTATAAATGGTCAAAGACCGTGCATAAGAAGTTGGGTTAAGAATTATGTTAGCCTTGCGCATGATGATATTTGATGCCCCAAAATTTCAGGTATTTTTCCTTTTTATTACGAACCCGTCTTTTAATAAGAAGTTAGGAGAATATAGGAAAAAAAACATAACTAATTAATCAATACAAATATTGCAGGAAGATTGGGTTTTATTTAGTGTTATTTGTTTAAGGAAGAGGAAAAAGGGAAAGAGGAGAATTAATTTAATTAGGAAAAAAAGAGAGATTTTATTGTAAAGTGAGGTATTATAAGATTTAAATTGGATTGGAAAAGGGAAAAGATTTTATTTTTTTGGTTATTTATGGAGTCTCGGTTTGCCTACTAGGTTAAAGTAAAGAAAAGAAAAAGAAAAGAAAATTTCTTTTCTCTCTCTTTCTCCCTCTTCGTACCAGCGCCACCCCTCCCCCTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCGTGCCTCTCTGTCCGCCAATCAGACGTCGCTAGTAACAAGCCAAGCCACTGCCGCCCGTGCACGCTTGCCCTCGGCATTGCAGGTCAGCTGCCGTTCCGCGAGTCCGTGTGCCTGCTGCTGCAATCGCGAGCCGTCTTCCACCCTGTTTCGCGACCCGCCGTCGACAGCCCCTCGCCGGATCTATGGGTCTTGGTAGATCCTTGGTAAGAATCGGTTCCGCAATTTATTTCTTCCCCTTGTTGGGTTTCTCGTGGGTTTAACGCTTGACATTTTTTTGTGGTTTTTAATTGTCTTCAAAGGGACGTTAGAGAAGGTCAAGATTGAATCAGGAATTGGGAATTTTGGACATTTTTAGGCATTCACAGGTAAGGGACTTACTACCAGGTCTAGCCACGCCTAATGTGCAATTATGTCACTGTATGGCTAATTATGTTATGTACAAGTTTTGGCTAGTAAATCGAAAGTACTAATGCCCTTATTGCCCCGAACGATTACTGTATGAAATTGACTCATTATGCTAGGTTATGTTATGTTACTTGCATGTGTTATAGTTTTGCCTACGATGCTGTGTGATAGTGTGACTCACTGCAATGAACTGATTATGTCATGACATGTACTTGATTGTTACCCTATTTATCGTGCCTTGTACCCCTAATGTGATTATGCCTATGACAAGGTGTCCCTCGGGATCACCACCTATGTTTATGTTTACAAATTTAATCACTACGTACCTTTGGGTCGCTACCTATGTTTATGCCTATGTCGGGTACACGGGTGCATGTGATAAAAGGATAACAACTTCACCATAGGCCCAGTAGCGTACCTTTGGGTCGCTACCTATGCTTATGCCTATGTCGGGTACACGGGTGCATGCGATAAAAGGATAACAACTTCACCATAGGCCCAGTAGTGGATTTCTTACTAAGTACAATTACTCGCCTTTTCCTATTTTTTCTTTTCTTAGGTAAGGGATGGGACGACCAGGCATATGACAAGAGGAGGCCGTGACCATGCCATGGGAGGATAGGACATAGAGTATTGAATATGTAAGGTAGTAGCATTCGTTCATTTATTTGACCATTGGTTTACTTTTTTTTTTTTTCGTATTTGACTTTCTTTTTCCTTGAGATTTTGACCACACTATTTAAGGGGGACCCCGCTAAAGCATTTAATTCCTCTATATTTGATTTAATAAGATATCCGAATTTAGGTTGTTTAATATTTTTGGCAGAGTTTAATTAAATTATTTAATGCTGAGTAGAAAGTCCAAGGTGGTACGAGTTTTTTCAATATGGTGAAAGTACTTTGCTTAAAGAGTTCAGAAGTGGTGCTACTAGTTTAGGAGTAACTAATGATGGAGCGTTGTTAGCACCTTTTCAATTGAGGCCTAAGTTAGTTGATGAGGTAGTAAAGAAACAGTTCGAAGATCCTGTGATTAAAAAGATATGGGAAGAAATGAAGGCTCAGCAAAGAGCAGATTTCGAGTTAAGATCTGATGGTGTACTGTTGAAGCATGGTAGAGTGTATGTACCAAAGGATACTGAAGTCAAGCAGGCGATTCTTGATGAGGCACATAGCTCAACTAATGTTATGCATCCTGGCAGTACCAAGATGTATAGGGCGTTACAAGATTTTGATTGGTGGGCAGGTATGAAGAGGGAGATAGCTGAGTTTATGACGAAATGTTTAATTTGTCAGCGAATTAAGCCTGCACGTTAG

mRNA sequence

ATGGAAGTGAGTGAGAGATTGGGAGTTGGTGCTAGCGAGAGCTGTAGAGTTGTGTCGCTGGGTCGTGGATCTGACAATACTGAGGAAGTGAGCGAAAGGGAAGGACTAAAAAGAGCTTTATCACTAGATCGTGGGTCTGACGGTACTAAGGAAGTGAGCGGGAGGTTGGGACCAGCAAGAGTTATGTCACTGGGTCGTGGGTCTGTAGGTACCGAGGAAGCGAGTGAGAGGAGGGGACTAGCGAGAGCTGTGTCGATAGATCCTGGGTCTATCAATACAGAAGGAGTGAGCGAGAGTATGGGAGTTGGTGCTAGTGAGAGGCGGAAAGTTGGGCTAGTTTGCAATGTGGGCTTGTTGCGGAACCTATCTTGGTCTGTCCCAGTGAATCAAATGGAGTCCATAAGCCGCTTGTCTGGGTCTCGCCTATTTAGGGTCAGTTCATGTCATCATGAGAGCCTATCAACATGTAAGTGGTTCTCCCTATTATGTGCTCTGAAATCTGATGAGTTGTTATATACTCTGCCTAAGATGGTGGAAGATGTGGTGGTAGTTGAACCATTTGAGGAGGTGCTGAACGTGGGGTGTTGTCTATGGGAGAACTCTTTGGTTGGTCAATTTATGGATGCTACCTTGCCTTATATTGTCATTCAATGCTTCGTTACCCGTATATGGGGTAAGAGTCAAGACCACTTGCATCGAACCTCTAATGATGAAAATCGGGTTGAACTGGCTGAAAACCAGCTGAACTGGAGGGAAATAGCTAAACCGGACCGCATCTTCTTTAACTCACATGTTTCTGGAAAAAGAAATCAACAACGTCGCGACGCTCCACAGCACAAGGTGCTGCTGCTCCTCGATACTGCTTGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGACGGGTTCTAGGATGAGCATTGAGACCTTGGGTACAAATGGTCAAGGGTCAATGATCGATGTAGAGCTCGGGGCCTTGGGTATAAATGGTCAAAGACCGTGCATAAGAACCAAGCCACTGCCGCCCGTGCACGCTTGCCCTCGGCATTGCAGGTCAGCTGCCGTTCCGCGAGTCCGTGTGCCTGCTGCTGCAATCGCGAGCCGTCTTCCACCCTGTTTCGCGACCCGCCGTCGACAGCCCCTCGCCGGATCTATGGGTCTTGGTAGATCCTTGAGAAGGTCAAGATTGAATCAGGAATTGGGAATTTTGGACATTTTTAGGCATTCACAGGATAACAACTTCACCATAGGCCCAGTAGCGTACCTTTGGGTCGCTACCTATGCTTATGCCTATGTCGGGTGGTACGAGTTTTTTCAATATGGTGAAAGTACTTTGCTTAAAGAGTTCAGAAGTGGTGCTACTAGTTTAGGAGTAACTAATGATGGAGCGTTGTTAGCACCTTTTCAATTGAGGCCTAAGTTAGTTGATGAGGTAGTAAAGAAACAGTTCGAAGATCCTGTGATTAAAAAGATATGGGAAGAAATGAAGGCTCAGCAAAGAGCAGATTTCGAGTTAAGATCTGATGGTGTACTGTTGAAGCATGGTAGAGTGTATGTACCAAAGGATACTGAAGTCAAGCAGGCGATTCTTGATGAGGCACATAGCTCAACTAATGTTATGCATCCTGGCAGTACCAAGATGTATAGGGCGTTACAAGATTTTGATTGGTGGGCAGGTATGAAGAGGGAGATAGCTGAGTTTATGACGAAATGTTTAATTTGTCAGCGAATTAAGCCTGCACGTTAG

Coding sequence (CDS)

ATGGAAGTGAGTGAGAGATTGGGAGTTGGTGCTAGCGAGAGCTGTAGAGTTGTGTCGCTGGGTCGTGGATCTGACAATACTGAGGAAGTGAGCGAAAGGGAAGGACTAAAAAGAGCTTTATCACTAGATCGTGGGTCTGACGGTACTAAGGAAGTGAGCGGGAGGTTGGGACCAGCAAGAGTTATGTCACTGGGTCGTGGGTCTGTAGGTACCGAGGAAGCGAGTGAGAGGAGGGGACTAGCGAGAGCTGTGTCGATAGATCCTGGGTCTATCAATACAGAAGGAGTGAGCGAGAGTATGGGAGTTGGTGCTAGTGAGAGGCGGAAAGTTGGGCTAGTTTGCAATGTGGGCTTGTTGCGGAACCTATCTTGGTCTGTCCCAGTGAATCAAATGGAGTCCATAAGCCGCTTGTCTGGGTCTCGCCTATTTAGGGTCAGTTCATGTCATCATGAGAGCCTATCAACATGTAAGTGGTTCTCCCTATTATGTGCTCTGAAATCTGATGAGTTGTTATATACTCTGCCTAAGATGGTGGAAGATGTGGTGGTAGTTGAACCATTTGAGGAGGTGCTGAACGTGGGGTGTTGTCTATGGGAGAACTCTTTGGTTGGTCAATTTATGGATGCTACCTTGCCTTATATTGTCATTCAATGCTTCGTTACCCGTATATGGGGTAAGAGTCAAGACCACTTGCATCGAACCTCTAATGATGAAAATCGGGTTGAACTGGCTGAAAACCAGCTGAACTGGAGGGAAATAGCTAAACCGGACCGCATCTTCTTTAACTCACATGTTTCTGGAAAAAGAAATCAACAACGTCGCGACGCTCCACAGCACAAGGTGCTGCTGCTCCTCGATACTGCTTGCCTTGGGTACAAATGGTCAAGGGTCGGTGTGACGGGTTCTAGGATGAGCATTGAGACCTTGGGTACAAATGGTCAAGGGTCAATGATCGATGTAGAGCTCGGGGCCTTGGGTATAAATGGTCAAAGACCGTGCATAAGAACCAAGCCACTGCCGCCCGTGCACGCTTGCCCTCGGCATTGCAGGTCAGCTGCCGTTCCGCGAGTCCGTGTGCCTGCTGCTGCAATCGCGAGCCGTCTTCCACCCTGTTTCGCGACCCGCCGTCGACAGCCCCTCGCCGGATCTATGGGTCTTGGTAGATCCTTGAGAAGGTCAAGATTGAATCAGGAATTGGGAATTTTGGACATTTTTAGGCATTCACAGGATAACAACTTCACCATAGGCCCAGTAGCGTACCTTTGGGTCGCTACCTATGCTTATGCCTATGTCGGGTGGTACGAGTTTTTTCAATATGGTGAAAGTACTTTGCTTAAAGAGTTCAGAAGTGGTGCTACTAGTTTAGGAGTAACTAATGATGGAGCGTTGTTAGCACCTTTTCAATTGAGGCCTAAGTTAGTTGATGAGGTAGTAAAGAAACAGTTCGAAGATCCTGTGATTAAAAAGATATGGGAAGAAATGAAGGCTCAGCAAAGAGCAGATTTCGAGTTAAGATCTGATGGTGTACTGTTGAAGCATGGTAGAGTGTATGTACCAAAGGATACTGAAGTCAAGCAGGCGATTCTTGATGAGGCACATAGCTCAACTAATGTTATGCATCCTGGCAGTACCAAGATGTATAGGGCGTTACAAGATTTTGATTGGTGGGCAGGTATGAAGAGGGAGATAGCTGAGTTTATGACGAAATGTTTAATTTGTCAGCGAATTAAGCCTGCACGTTAG

Protein sequence

MEVSERLGVGASESCRVVSLGRGSDNTEEVSEREGLKRALSLDRGSDGTKEVSGRLGPARVMSLGRGSVGTEEASERRGLARAVSIDPGSINTEGVSESMGVGASERRKVGLVCNVGLLRNLSWSVPVNQMESISRLSGSRLFRVSSCHHESLSTCKWFSLLCALKSDELLYTLPKMVEDVVVVEPFEEVLNVGCCLWENSLVGQFMDATLPYIVIQCFVTRIWGKSQDHLHRTSNDENRVELAENQLNWREIAKPDRIFFNSHVSGKRNQQRRDAPQHKVLLLLDTACLGYKWSRVGVTGSRMSIETLGTNGQGSMIDVELGALGINGQRPCIRTKPLPPVHACPRHCRSAAVPRVRVPAAAIASRLPPCFATRRRQPLAGSMGLGRSLRRSRLNQELGILDIFRHSQDNNFTIGPVAYLWVATYAYAYVGWYEFFQYGESTLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREIAEFMTKCLICQRIKPAR
Homology
[Close]
BLAST of Clc10G07504 vs. NCBI nr
Match: KAA0067054.1 (putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK26291.1 putative Retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 153.7 bits (387), Expect = 4.9e-33
Identity = 68/137 (49.64%), Postives = 98/137 (71.53%), Query Frame = 0 

Query: 442 STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRAD 501
           S+LL+E + G  +  V   G+L+A FQ+RP L+D ++K Q +D +++K+ EE++  QR +
Sbjct: 97  SSLLRELKMGEVAGSVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLN 156

Query: 502 FELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKR 561
           + LR D  L+K+ R+ VP D  +K  IL+EAHSS   MHPGSTKMYR L+   WW GMKR
Sbjct: 157 YSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKR 216

Query: 562 EIAEFMTKCLICQRIKP 579
           EIA+++ KCLICQ++KP
Sbjct: 217 EIADYVAKCLICQQVKP 233

[Close]
BLAST of Clc10G07504 vs. NCBI nr
Match: KAA0032714.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 2.4e-32
Identity = 71/137 (51.82%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444 LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
           LL E R     +   + G+LLA FQ+R  LV E+VK+Q ED  ++K +E+ K     +FE
Sbjct: 319 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVKRQSEDSNLQKKFEKFKKGLEVEFE 378

Query: 504 LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
           LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 379 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 438

Query: 564 AEFMTKCLICQRIKPAR 581
           AE++ +CLICQ++KP R
Sbjct: 439 AEYVDRCLICQQVKPVR 455

[Close]
BLAST of Clc10G07504 vs. NCBI nr
Match: KAA0042192.1 (polyprotein [Cucumis melo var. makuwa] >TYK26762.1 polyprotein [Cucumis melo var. makuwa])

HSP 1 Score: 151.0 bits (380), Expect = 3.2e-32
Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = 0 

Query: 442 STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRAD 501
           S LL+E + G  ++ V   G+L+A FQ+RP L+D +++ Q  D +++K+ EE++  Q  +
Sbjct: 22  SLLLRELKMGEATVSVGKLGSLIAHFQVRPILIDHIIQAQLHDAMLRKLAEEVRLNQSLN 81

Query: 502 FELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKR 561
           F LR DG L+K+ R+ VP+D  +K  IL EAHSS   MHPGSTKMYR L+   WW GMKR
Sbjct: 82  FTLRGDGALMKYDRLCVPRDQTLKDQILKEAHSSAYAMHPGSTKMYRTLKKHYWWLGMKR 141

Query: 562 EIAEFMTKCLICQRIKPAR 581
           EI E++  CLICQ++KP R
Sbjct: 142 EIVEYVANCLICQQVKPER 160

[Close]
BLAST of Clc10G07504 vs. NCBI nr
Match: KAA0053246.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 7.1e-32
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444 LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
           LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FE
Sbjct: 115 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFE 174

Query: 504 LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
           LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 175 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 234

Query: 564 AEFMTKCLICQRIKPAR 581
           AE++ +CLICQ++KP R
Sbjct: 235 AEYVDRCLICQQVKPVR 251

[Close]
BLAST of Clc10G07504 vs. NCBI nr
Match: KAA0050493.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.8 bits (377), Expect = 7.1e-32
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444 LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
           LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FE
Sbjct: 637 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFE 696

Query: 504 LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
           LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 697 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 756

Query: 564 AEFMTKCLICQRIKPAR 581
           AE++ +CLICQ++KP R
Sbjct: 757 AEYVDRCLICQQVKPVR 773

[Close]
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match: A0A5A7VI68 (Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00660 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 2.4e-33
Identity = 68/137 (49.64%), Postives = 98/137 (71.53%), Query Frame = 0 

Query: 442 STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRAD 501
           S+LL+E + G  +  V   G+L+A FQ+RP L+D ++K Q +D +++K+ EE++  QR +
Sbjct: 97  SSLLRELKMGEVAGSVGKLGSLIAHFQVRPILIDRIIKAQLDDAMLRKLAEEVRQNQRLN 156

Query: 502 FELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKR 561
           + LR D  L+K+ R+ VP D  +K  IL+EAHSS   MHPGSTKMYR L+   WW GMKR
Sbjct: 157 YSLRGDSALMKYDRLCVPSDQAIKDQILEEAHSSAYAMHPGSTKMYRTLKKHYWWPGMKR 216

Query: 562 EIAEFMTKCLICQRIKP 579
           EIA+++ KCLICQ++KP
Sbjct: 217 EIADYVAKCLICQQVKP 233

[Close]
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match: A0A5A7SNE6 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold853G00530 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.2e-32
Identity = 71/137 (51.82%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444 LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
           LL E R     +   + G+LLA FQ+R  LV E+VK+Q ED  ++K +E+ K     +FE
Sbjct: 319 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVKRQSEDSNLQKKFEKFKKGLEVEFE 378

Query: 504 LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
           LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 379 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 438

Query: 564 AEFMTKCLICQRIKPAR 581
           AE++ +CLICQ++KP R
Sbjct: 439 AEYVDRCLICQQVKPVR 455

[Close]
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match: A0A5D3DTE8 (Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00540 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.5e-32
Identity = 68/139 (48.92%), Postives = 96/139 (69.06%), Query Frame = 0 

Query: 442 STLLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRAD 501
           S LL+E + G  ++ V   G+L+A FQ+RP L+D +++ Q  D +++K+ EE++  Q  +
Sbjct: 22  SLLLRELKMGEATVSVGKLGSLIAHFQVRPILIDHIIQAQLHDAMLRKLAEEVRLNQSLN 81

Query: 502 FELRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKR 561
           F LR DG L+K+ R+ VP+D  +K  IL EAHSS   MHPGSTKMYR L+   WW GMKR
Sbjct: 82  FTLRGDGALMKYDRLCVPRDQTLKDQILKEAHSSAYAMHPGSTKMYRTLKKHYWWLGMKR 141

Query: 562 EIAEFMTKCLICQRIKPAR 581
           EI E++  CLICQ++KP R
Sbjct: 142 EIVEYVANCLICQQVKPER 160

[Close]
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match: A0A5A7U2V7 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold374G00630 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-32
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
            LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FE
Sbjct: 1045 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFE 1104

Query: 504  LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
            LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 1105 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 1164

Query: 564  AEFMTKCLICQRIKPAR 581
            AE++ +CLICQ++KP R
Sbjct: 1165 AEYVDRCLICQQVKPVR 1181

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BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match: A0A5D3BS67 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold509G00050 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.4e-32
Identity = 70/137 (51.09%), Postives = 97/137 (70.80%), Query Frame = 0 

Query: 444  LLKEFRSGATSLGVTNDGALLAPFQLRPKLVDEVVKKQFEDPVIKKIWEEMKAQQRADFE 503
            LL E R     +   + G+LLA FQ+R  LV E+V++Q ED  ++K +E+ K     +FE
Sbjct: 1083 LLNELRGSKAVVTTEDSGSLLAQFQVRSSLVTEIVRRQSEDSNLQKKFEKSKKGLEVEFE 1142

Query: 504  LRSDGVLLKHGRVYVPKDTEVKQAILDEAHSSTNVMHPGSTKMYRALQDFDWWAGMKREI 563
            LR+DG ++K GR+ VP  +E+K AIL+EAHSS   MHPGSTKMYR L+   WW+GMK+EI
Sbjct: 1143 LRTDGAIVKQGRLCVPNISELKNAILEEAHSSAYAMHPGSTKMYRTLKKTYWWSGMKQEI 1202

Query: 564  AEFMTKCLICQRIKPAR 581
            AE++ +CLICQ++KP R
Sbjct: 1203 AEYVDRCLICQQVKPVR 1219

The following BLAST results are available for this feature:
BLAST of Clc10G07504 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0067054.14.9e-3349.64putative Retrotransposon protein [Cucumis melo var. makuwa] >TYK26291.1 putative... [more]
KAA0032714.12.4e-3251.82DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0042192.13.2e-3248.92polyprotein [Cucumis melo var. makuwa] >TYK26762.1 polyprotein [Cucumis melo var... [more]
KAA0053246.17.1e-3251.09DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
KAA0050493.17.1e-3251.09DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
BLAST of Clc10G07504 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VI682.4e-3349.64Putative Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7SNE61.2e-3251.82DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3DTE81.5e-3248.92Polyprotein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold124G00540 PE... [more]
A0A5A7U2V73.4e-3251.09Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold37... [more]
A0A5D3BS673.4e-3251.09Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold50... [more]
BLAST of Clc10G07504 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR041588Integrase zinc-binding domainPFAMPF17921Integrase_H2C2coord: 522..578
e-value: 2.1E-13
score: 50.1
NoneNo IPR availableGENE3D1.10.340.70coord: 486..576
e-value: 1.3E-14
score: 56.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..50
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 20..56
NoneNo IPR availablePANTHERPTHR24559TRANSPOSON TY3-I GAG-POL POLYPROTEINcoord: 437..553
NoneNo IPR availablePANTHERPTHR24559:SF377SUBFAMILY NOT NAMEDcoord: 437..553

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G07504.1Clc10G07504.1mRNA