Clc10G07325 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G07325
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr10: 10570521 .. 10570763 (+)
RNA-Seq ExpressionClc10G07325
SyntenyClc10G07325
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTCTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTCACAAGTTAGCTGAGTGA

mRNA sequence

ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTCTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTCACAAGTTAGCTGAGTGA

Coding sequence (CDS)

ATGACTGAAGCATATGCTATGCTCTTTGGTTTTCAACAAGTGCATGAATGGGGCTTTTCTGTGTTTTTTATTGAATTAGATTCTCAAATCCTTGTTAATGCTATCCATGAGGGTAATCTTAATGGATCTCCTTATGGAGTGATTATTGAGGAAATTAGAGAGTGGATGACAAAAAGTAATTCAGTTGGGATAAATTTTATCCCGAGGGGTGAGAATGGTGTGGCTCACAAGTTAGCTGAGTGA

Protein sequence

MTEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVAHKLAE
Homology
BLAST of Clc10G07325 vs. NCBI nr
Match: XP_042941317.1 (uncharacterized protein LOC122275981 [Carya illinoinensis])

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 16  EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75
           E GFS   +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+A
Sbjct: 146 ELGFSSVILEGDSQVIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 205

Query: 76  HKLAE 81
           HKLA+
Sbjct: 206 HKLAK 210

BLAST of Clc10G07325 vs. NCBI nr
Match: XP_042958055.1 (uncharacterized protein LOC122293570 [Carya illinoinensis])

HSP 1 Score: 58.9 bits (141), Expect = 2.3e-05
Identity = 27/65 (41.54%), Postives = 43/65 (66.15%), Query Frame = 0

Query: 16   EWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSVGINFIPRGENGVA 75
            E GFS   +E DSQ++VNA++      + YG IIE++R+ + +  + G+ F+ R  NG+A
Sbjct: 1137 EMGFSSVILEGDSQLIVNAVNSDEEIWAEYGNIIEDVRKVLLERPNWGVKFVYRESNGIA 1196

Query: 76   HKLAE 81
            HKLA+
Sbjct: 1197 HKLAK 1201

BLAST of Clc10G07325 vs. NCBI nr
Match: XP_024177931.1 (uncharacterized protein LOC112183838 [Rosa chinensis])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 27/79 (34.18%), Postives = 43/79 (54.43%), Query Frame = 0

Query: 2   TEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNS 61
           TE  A++ G Q     GF    +E D Q+LV  +    L+ S  G ++ +++E +   +S
Sbjct: 49  TELLALILGLQLAISHGFVPLVVESDCQVLVQVVPNQTLDYSDLGFLLYDLQELLQSVSS 108

Query: 62  VGINFIPRGENGVAHKLAE 81
             +NF+ R  N VAHKLA+
Sbjct: 109 AQLNFVRRQANSVAHKLAQ 127

BLAST of Clc10G07325 vs. NCBI nr
Match: XP_038704726.1 (uncharacterized protein LOC120000672 [Tripterygium wilfordii])

HSP 1 Score: 56.2 bits (134), Expect = 1.5e-04
Identity = 31/79 (39.24%), Postives = 45/79 (56.96%), Query Frame = 0

Query: 1   MTEAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSN 60
           + +AYA++ G Q     G S   IE DS +LVNAI       +P+G I+++IR  ++   
Sbjct: 165 VVKAYALMKGTQLAIHMGVSNLIIESDSHVLVNAIRSEAYELAPFGHILDDIRSLISCIG 224

Query: 61  SVGINFIPRGENGVAHKLA 80
           SV + +  R  N VAHKLA
Sbjct: 225 SVSLRYTRRLCNRVAHKLA 243

BLAST of Clc10G07325 vs. NCBI nr
Match: KAF7821986.1 (putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-containing protein [Senna tora])

HSP 1 Score: 55.5 bits (132), Expect = 2.5e-04
Identity = 30/77 (38.96%), Postives = 47/77 (61.04%), Query Frame = 0

Query: 3   EAYAMLFGFQQVHEWGFSVFFIELDSQILVNAIHEGNLNGSPYGVIIEEIREWMTKSNSV 62
           EA A+L G +Q      +   IE D+Q +VN +++GN++ S  G++IEEI E  +  +S+
Sbjct: 542 EALAVLEGMKQAQLMCCNRIIIESDAQRVVNLLNKGNIDISYLGLVIEEILELKSHFSSI 601

Query: 63  GINFIPRGENGVAHKLA 80
             N++ R  N VAH LA
Sbjct: 602 SFNWVKREANMVAHTLA 618

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_042941317.12.3e-0541.54uncharacterized protein LOC122275981 [Carya illinoinensis][more]
XP_042958055.12.3e-0541.54uncharacterized protein LOC122293570 [Carya illinoinensis][more]
XP_024177931.11.5e-0434.18uncharacterized protein LOC112183838 [Rosa chinensis][more]
XP_038704726.11.5e-0439.24uncharacterized protein LOC120000672 [Tripterygium wilfordii][more]
KAF7821986.12.5e-0438.96putative ribonuclease H-like domain, reverse transcriptase zinc-binding domain-c... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 2..79
e-value: 3.6E-13
score: 49.4
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 1..80
e-value: 6.7E-8
score: 34.5
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 1..79
e-value: 4.61517E-15
score: 62.7168
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 3..79

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G07325.1Clc10G07325.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity