Clc10G06700 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G06700
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionIdentified as a screen for stress-responsive genes.
LocationClcChr10: 9230576 .. 9231889 (+)
RNA-Seq ExpressionClc10G06700
SyntenyClc10G06700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAAGATAAAGGTAGTGGATCTTAATTAATTTTCAAACACAATCAAATTGAACATCATTTATTATTCAATTAGATTGTAAGATTTGATTACAGATTTTGAGGTGTACCCTACAACTCATTAGATTACAAAATGTAGGTAAACAACAACAATAGTAATCAACTGTGACCCACTTTTTACATTAGGATTGATGGAATACATTTTCTTTAATGTAGAGATGACCTAAATGATTACTTTTAAAAAAGAATCAAAAGTATTTTTTCCTCTAATTAAAAATTTGAAAAATTTAGAAACTAAAATAGAGATTTTTAATAGTCATAAGTCAAAGATGGAATGAACCCACTAATTCAGCAACAAAATAAGATTAACAAAAAAAAAAAAAAAGAAATTAAGTATATTTTTGTTTTAATTAGTAACGTAATAATGATATTCATTTCCAGCCATTTCCAAAGGGAAAATTGAAAGGAAAAAGAGGAAAAAAAAAAAAAAGAAAAGAAAAAAGAAAAAAGAAATTGTAGGAACCGTCCAGTTTAATGTCTCTGATATTTATTTATTTATTTATTTTTGTCGGGTCCTTTGATTTTTATTTTTTATTTTTCATCATCAATCTTCATAAATCTCTAGGCATTTTCCGCCATAATTTCTCCCCAATCCCTAAACTGAAGAACACGAAAAAAAAAAAAAGAAAAAAGAAGGAAAACAAAAATGGCGGATGGCTACTCCAAAATCAAAGCGGCTTGCAAATTGAAATCAAGATCCATCGATTACTCCGATCTCTCCTCACTTCCTCACTCTCTCAGATTCAATGCGGCCGTCTCCAATCCAATCTCTCATGATTCCAGTCAGAACCGAAGGAATCGACCGCGGGAACCACCGCACAGCCGGTTACCGGAGGAAGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATACGAATACGGCGGGACCGGGACCGTGGCTAGGCTTAGTCGAAACAGCTCTGTTTCTTCATCGGCTTCCGGATTTCAGTCGGCAGTGAAGAGAGCATTATCGATGAGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCAACGTCGATGGAGGATGATGAAATGGAAGGAGGAAAAACAGGAGGATCTGTGAGGAAGGAGAAGAAGAAGAAGAAGAAGACGGCGACAGGGAAAATGGTTAGAGCATGTAAGCGACTTTTTGGACTGTAGTTTTTTGAATTGATCCGTAAAGCTAAAATTGTTATTGATGAATTGTTGAAGAGAGGAAGATGAGTTTTTTTTTTTTT

mRNA sequence

ATGTCAGAACCGAAGGAATCGACCGCGGGAACCACCGCACAGCCGGTTACCGGAGGAAGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATACGAATACGGCGGGACCGGGACCGTGGCTAGGCTTAGTCGAAACAGCTCTGTTTCTTCATCGGCTTCCGGATTTCAGTCGGCAGTGAAGAGAGCATTATCGATGAGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCAACGTCGATGGAGGATGATGAAATGGAAGGAGGAAAAACAGGAGGATCTGTGAGGAAGGAGAAGAAGAAGAAGAAGAAGACGGCGACAGGGAAAATGGTTAGAGCATGTAAGCGACTTTTTGGACTGTAGTTTTTTGAATTGATCCGTAAAGCTAAAATTGTTATTGATGAATTGTTGAAGAGAGGAAGATGAGTTTTTTTTTTTTT

Coding sequence (CDS)

ATGTCAGAACCGAAGGAATCGACCGCGGGAACCACCGCACAGCCGGTTACCGGAGGAAGTAGAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAATACGAATACGGCGGGACCGGGACCGTGGCTAGGCTTAGTCGAAACAGCTCTGTTTCTTCATCGGCTTCCGGATTTCAGTCGGCAGTGAAGAGAGCATTATCGATGAGGAGATCTTCATCCGTAGCGGAACGGTACTGTAGGATTCACGATCAGTTCGCGACATTTGCAACGTCGATGGAGGATGATGAAATGGAAGGAGGAAAAACAGGAGGATCTGTGAGGAAGGAGAAGAAGAAGAAGAAGAAGACGGCGACAGGGAAAATGGTTAGAGCATGTAAGCGACTTTTTGGACTGTAG

Protein sequence

MSEPKESTAGTTAQPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTGGSVRKEKKKKKKTATGKMVRACKRLFGL
Homology
BLAST of Clc10G06700 vs. NCBI nr
Match: KAG7015455.1 (hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 142.9 bits (359), Expect = 2.0e-30
Identity = 87/120 (72.50%), Postives = 97/120 (80.83%), Query Frame = 0

Query: 20  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAER 79
           SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAER
Sbjct: 57  SRLPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 116

Query: 80  YCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKMVRACKRLFGL 132
           YCRIHDQFAT A+ ++DDEME G      KTGGSV+K KKKKKK + GK+VRACKRLFG+
Sbjct: 117 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAGKIVRACKRLFGI 176

BLAST of Clc10G06700 vs. NCBI nr
Match: XP_022929198.1 (uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothetical protein SDJN03_24940, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 139.8 bits (351), Expect = 1.7e-29
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 20  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAER 79
           SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAER
Sbjct: 57  SRLPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 116

Query: 80  YCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKMVRACKRLFGL 132
           YCRIHDQFAT A+ ++DDEME G      KTGGSV+K KKKKKK +  K+VRACKRLFG+
Sbjct: 117 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176

BLAST of Clc10G06700 vs. NCBI nr
Match: KGN56255.1 (hypothetical protein Csa_011668 [Cucumis sativus])

HSP 1 Score: 127.1 bits (318), Expect = 1.1e-25
Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = 0

Query: 14  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSS 73
           +P  G   EE+EE  ++E +   G T   A L RNSSVSSS SGFQSAVKRALSMRRSSS
Sbjct: 48  EPPHGRLPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSS 107

Query: 74  VAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVRKEKKKKKKTATGKMVRACKR 132
           VAERYCRIHDQFATFA+ +EDDEMEG      GK GGS    KKKKKK A  K+VRACKR
Sbjct: 108 VAERYCRIHDQFATFASPIEDDEMEGGDWKERGKIGGS-EIRKKKKKKNAAEKIVRACKR 167

BLAST of Clc10G06700 vs. NCBI nr
Match: XP_022136741.1 (uncharacterized protein LOC111008371 [Momordica charantia])

HSP 1 Score: 121.7 bits (304), Expect = 4.7e-24
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 0

Query: 28  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFAT 87
           EEEE EY  GG   VA LSRNSSVSSSASG  SAVKRALSMRRSSSVAERYCRIHDQFAT
Sbjct: 63  EEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQFAT 122

Query: 88  FATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKMVRACKRLFGL 132
            A+ ++D+E+  G      K+ GSVR    +KKK A GK+VRACKRLFGL
Sbjct: 123 LASPIDDEEIGAGDSKESRKSAGSVR----RKKKNAAGKIVRACKRLFGL 168

BLAST of Clc10G06700 vs. NCBI nr
Match: KAG7031359.1 (hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-22
Identity = 72/110 (65.45%), Postives = 81/110 (73.64%), Query Frame = 0

Query: 28  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFAT 87
           EEEE EY    T T + L RN SVS+SASGF SAVKRALSMRRSSSVAERY RIHDQF T
Sbjct: 63  EEEEDEYRSAATATASTLRRNCSVSASASGFHSAVKRALSMRRSSSVAERYSRIHDQFGT 122

Query: 88  FATSMEDDEMEGGKT------GGSVRKEKKKKKKTATGKMVRACKRLFGL 132
            A+ ++DDE+EG ++      GGSVR    KKK  A GK+VRACKRLFGL
Sbjct: 123 LASPIDDDEIEGEESKEGRNAGGSVR----KKKTNAAGKIVRACKRLFGL 168

BLAST of Clc10G06700 vs. ExPASy TrEMBL
Match: A0A6J1ERE9 (uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC111435863 PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 8.1e-30
Identity = 86/120 (71.67%), Postives = 96/120 (80.00%), Query Frame = 0

Query: 20  SREEEEEEEEEEKEYEYGG--TGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAER 79
           SR  EEEEEEEE+E EYGG  +   A LSRN+SVSSS SGF SAVKRALSMRRSSSVAER
Sbjct: 57  SRLPEEEEEEEEEEDEYGGEVSARAAALSRNNSVSSSVSGFHSAVKRALSMRRSSSVAER 116

Query: 80  YCRIHDQFATFATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKMVRACKRLFGL 132
           YCRIHDQFAT A+ ++DDEME G      KTGGSV+K KKKKKK +  K+VRACKRLFG+
Sbjct: 117 YCRIHDQFATLASPIDDDEMEDGDSKEERKTGGSVKKTKKKKKKNSAEKIVRACKRLFGI 176

BLAST of Clc10G06700 vs. ExPASy TrEMBL
Match: A0A0A0L2N9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.4e-26
Identity = 82/124 (66.13%), Postives = 91/124 (73.39%), Query Frame = 0

Query: 14  QPVTGGSREEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSS 73
           +P  G   EE+EE  ++E +   G T   A L RNSSVSSS SGFQSAVKRALSMRRSSS
Sbjct: 48  EPPHGRLPEEDEEVNDDECDRPRGATTAAATLCRNSSVSSSVSGFQSAVKRALSMRRSSS 107

Query: 74  VAERYCRIHDQFATFATSMEDDEMEG------GKTGGSVRKEKKKKKKTATGKMVRACKR 132
           VAERYCRIHDQFATFA+ +EDDEMEG      GK GGS    KKKKKK A  K+VRACKR
Sbjct: 108 VAERYCRIHDQFATFASPIEDDEMEGGDWKERGKIGGS-EIRKKKKKKNAAEKIVRACKR 167

BLAST of Clc10G06700 vs. ExPASy TrEMBL
Match: A0A6J1C4C9 (uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008371 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 2.3e-24
Identity = 76/110 (69.09%), Postives = 84/110 (76.36%), Query Frame = 0

Query: 28  EEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFAT 87
           EEEE EY  GG   VA LSRNSSVSSSASG  SAVKRALSMRRSSSVAERYCRIHDQFAT
Sbjct: 63  EEEEDEYGGGGGVAVAALSRNSSVSSSASGLHSAVKRALSMRRSSSVAERYCRIHDQFAT 122

Query: 88  FATSMEDDEMEGG------KTGGSVRKEKKKKKKTATGKMVRACKRLFGL 132
            A+ ++D+E+  G      K+ GSVR    +KKK A GK+VRACKRLFGL
Sbjct: 123 LASPIDDEEIGAGDSKESRKSAGSVR----RKKKNAAGKIVRACKRLFGL 168

BLAST of Clc10G06700 vs. ExPASy TrEMBL
Match: A0A5A7V402 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00790 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 75/111 (67.57%), Postives = 84/111 (75.68%), Query Frame = 0

Query: 22  EEEEEEEEEEKEYEYGGTGTVARLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRI 81
           EE+EE  ++E +   GGT   A LSRNSSVSSS SGFQSAVKRALSMRRSSSVAERYCRI
Sbjct: 64  EEDEEVNDDECDRPRGGT-AAATLSRNSSVSSSVSGFQSAVKRALSMRRSSSVAERYCRI 123

Query: 82  HDQFATFATSMEDDEMEG------GKTGGSVRKEKKKKKKTATGKMVRACK 127
           HDQFATFA+ +EDDE+EG      GK GGS    KKKKK  A GK+VRA +
Sbjct: 124 HDQFATFASPIEDDELEGGDSKERGKLGGSA--IKKKKKTNAAGKIVRALR 171

BLAST of Clc10G06700 vs. ExPASy TrEMBL
Match: A0A5N6QLE4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004482 PE=4 SV=1)

HSP 1 Score: 87.4 bits (215), Expect = 4.7e-14
Identity = 65/132 (49.24%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 2   SEPKESTAGTTAQPVTGGSREEEEEEEEEEKEYEYGGTGTV--ARLSRNSSVSSSASGFQ 61
           S+ K++ +  T++P  G   +E   E+E+      GG G    A LSR+ SVSS+ SGFQ
Sbjct: 27  SQTKKTNSDPTSKPHEGSQIKESNAEKEDGD----GGNGEKFGAVLSRSCSVSST-SGFQ 86

Query: 62  SAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTGGSVRKEKKKKKKTATG 121
           SAVKRA S++RSSSV+ERYCRI+DQ  T A+ ++DD+ EG  T  + R+  KKKK    G
Sbjct: 87  SAVKRAFSVKRSSSVSERYCRIYDQSVTLASPIDDDDDEGWDTMRATRRSVKKKKHKG-G 146

Query: 122 KMVRACKRLFGL 132
           K+++ACKRLFGL
Sbjct: 147 KILKACKRLFGL 152

BLAST of Clc10G06700 vs. TAIR 10
Match: AT4G24275.1 (Identified as a screen for stress-responsive genes. )

HSP 1 Score: 56.6 bits (135), Expect = 1.7e-08
Identity = 44/92 (47.83%), Postives = 56/92 (60.87%), Query Frame = 0

Query: 44  RLSRNSSVSSSASGFQSAVKRALSMRRSSSVAERYCRIHDQFATFATSMEDDEMEGGKTG 103
           +LSRN SVS+SA    S +K  +SMRRSSSV+ERYCRI+DQ  + AT+      EG +  
Sbjct: 38  KLSRNRSVSASAQAVPSPIK--MSMRRSSSVSERYCRIYDQ--SSATTWPLPFHEGDEDE 97

Query: 104 GSVRKEKKKKKKTATG----KMVRACKRLFGL 132
               KEK  KKK +        V+ACKR FG+
Sbjct: 98  DDDDKEKVHKKKKSNNFKKKAFVKACKRFFGI 125

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAG7015455.12.0e-3072.50hypothetical protein SDJN02_23091, partial [Cucurbita argyrosperma subsp. argyro... [more]
XP_022929198.11.7e-2971.67uncharacterized protein LOC111435863 [Cucurbita moschata] >KAG6577366.1 hypothet... [more]
KGN56255.11.1e-2566.13hypothetical protein Csa_011668 [Cucumis sativus][more]
XP_022136741.14.7e-2469.09uncharacterized protein LOC111008371 [Momordica charantia][more]
KAG7031359.12.0e-2265.45hypothetical protein SDJN02_05399, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1ERE98.1e-3071.67uncharacterized protein LOC111435863 OS=Cucurbita moschata OX=3662 GN=LOC1114358... [more]
A0A0A0L2N95.4e-2666.13Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G110030 PE=4 SV=1[more]
A0A6J1C4C92.3e-2469.09uncharacterized protein LOC111008371 OS=Momordica charantia OX=3673 GN=LOC111008... [more]
A0A5A7V4021.1e-2167.57Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5N6QLE44.7e-1449.24Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_004482 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT4G24275.11.7e-0847.83Identified as a screen for stress-responsive genes. [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..41
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 94..119
NoneNo IPR availablePANTHERPTHR38386OS05G0426900 PROTEINcoord: 4..131
NoneNo IPR availablePANTHERPTHR38386:SF6OS05G0426900 PROTEINcoord: 4..131

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G06700.1Clc10G06700.1mRNA