Clc10G06410 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGTATGTCTCATTCAGGGAAGCATTAACAGTACTGGAAGAAAAGAAATCATGGATCATAGTCATAATGTTGGGCTTAAGAGTAAGTAAAAAGATTTGAAGAATTCAGCAGCAAAACCATAAGGACCAGGAGACTTGTTTGACCCCAAAAAGGAAATTGCATGAAAAACCTCTGCTTCAGTAAAAGGAACTTCAATCCCAATTGTCTGTTCACAGCTCCAGTCAAGATTCAAAACATCCTTTGTAAACAATTCGTACAAAAATCAGTAAATTCAGTCTCAAGATCACTGGCTGACTAGAGGCTCTGGAAAGGATTTCAGTAATTGAGCTTCTATGCTTGGCAGCTAGAATTCGATGAAAAAAACTTGTTTTCATCACCCTTCTTAAGCCAATTTAATTTATAGCGTTGATGCCAATAAATATGCTCTTGAGCCGTCAACAATTTAATCTATTCTCTGAGCAACTGCGGATGTTTTCATCGCCCTCCTTAAACCTACTATTACTCATTTATTAAGAAACATAAGTTTTGTTAACCATCCCGTTACTTGTTTTAAATATATATATATATATATATATATATATATTTTTGGAGTATTCCTAAAATAGTGTTTCAGAAAATATATAAAAAAAAATAGTTTCTCTCTATTCTATTTCTGCTTTAAGGAGCTTTCTCTAGAAGGGCAAGGGCTAAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTAATCTGTCAAAGAATTCCCTCCAGGATCTGTCAAAAATCTGTGAATATTCTTGCTGCAGTCAAATAAAGCCTCAATAGATGCAGAAACTTAGGCCAGCCAGTTTGATATTCACGAGTATGAAGGTCAAATTTCCTTCTCGTTATCACTGCATTTTGCATGTGTTTTTCATGGTAAATAAAATGTGCAGGACTTTGCCTAAAATACCGATTCAGATGGATGCAGGATTAGCTCTGAAAGTCAAGTAGTTTAGCTATTTTTAGTTAAGTCTTTTCAAGTAATTGAATGCCATTAATTCATCAAATACATGCAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGGTAAAAAGTAATTCATGTATGTACCCTGCTTTTGTTTCTTTTTATTGTTATTATTTTTATTTTAAATTAGAGAGATGTTCTAGAGTTTGAATTGTACGTTGGCATTTTAAAAGAAGGTTTTTGTTGATACTTAGACTTCTTTCTTAAATTCTGTAATATGCTATTTTCTCAAAGGATTTAGCTACATTGTTGTATTTTTAAGGTCATACATTCATTATTCAATGATAGACTGGTGGCATAGTTTTGAAGTTTTGCATTATTTTAAATTTATTGTTTCCTGACATTCTGGACTGGCCCCTCCTTTTTAATGTCTTGAATGCTGAATGGTCGACTGTTCTCCTGTTATTGGCTTCTTTACTTATAAAACTCTAACCAGGTGATGTTACTTGATTTTGTAGATTCCGTCAGATGGGTTTTAAGCAATCTCCATGCTACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCCAGCGTACCACTTCTGCAAGAGCTTTACGTAAGGCTAGTTCACAAGAAACTGGGATATTTTCCAGCCCTCCAAGATTCTTGTCATACTTACTTGTGCCGTGTTCTTATGTATTAA ATGTATGTCTCATTCAGGGAAGCATTAACAGTACTGGAAGAAAAGAAATCATGGATCATAGTCATAATGTTGGGCTTAAGAGAGCTTTCTCTAGAAGGGCAAGGGCTAAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTAATCTGTCAAAGAATTCCCTCCAGGATCTGACTTTGCCTAAAATACCGATTCAGATGGATGCAGGATTAGCTCTGAAAGTCAAGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCCAGCGTACCACTTCTGCAAGAGCTTTACGTAAGGCTAGTTCACAAGAAACTGGGATATTTTCCAGCCCTCCAAGATTCTTGTCATACTTACTTGTGCCGTGTTCTTATGTATTAA ATGTATGTCTCATTCAGGGAAGCATTAACAGTACTGGAAGAAAAGAAATCATGGATCATAGTCATAATGTTGGGCTTAAGAGAGCTTTCTCTAGAAGGGCAAGGGCTAAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTAATCTGTCAAAGAATTCCCTCCAGGATCTGACTTTGCCTAAAATACCGATTCAGATGGATGCAGGATTAGCTCTGAAAGTCAAGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCCAGCGTACCACTTCTGCAAGAGCTTTACGTAAGGCTAGTTCACAAGAAACTGGGATATTTTCCAGCCCTCCAAGATTCTTGTCATACTTACTTGTGCCGTGTTCTTATGTATTAA MYVSFREALTVLEEKKSWIIVIMLGLRELSLEGQGLSAVPSEVWESSELMKLNLSKNSLQDLTLPKIPIQMDAGLALKVKNKIKDWPGAILKSLPNLMCLKLDNNPLKQVLDLSGNIASLPEHPTFSSVPLLQELYVRLVHKKLGYFPALQDSCHTYLCRVLMY Homology
BLAST of Clc10G06410 vs. NCBI nr
Match: XP_038905189.1 (plant intracellular Ras-group-related LRR protein 6 isoform X2 [Benincasa hispida]) HSP 1 Score: 165.2 bits (417), Expect = 4.6e-37 Identity = 89/129 (68.99%), Postives = 103/129 (79.84%), Query Frame = 0
BLAST of Clc10G06410 vs. NCBI nr
Match: XP_038905186.1 (plant intracellular Ras-group-related LRR protein 6 isoform X1 [Benincasa hispida]) HSP 1 Score: 165.2 bits (417), Expect = 4.6e-37 Identity = 89/129 (68.99%), Postives = 103/129 (79.84%), Query Frame = 0
BLAST of Clc10G06410 vs. NCBI nr
Match: TYK23805.1 (plant intracellular Ras-group-related LRR protein 6 [Cucumis melo var. makuwa]) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36 Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of Clc10G06410 vs. NCBI nr
Match: XP_008452268.1 (PREDICTED: plant intracellular Ras-group-related LRR protein 6 [Cucumis melo]) HSP 1 Score: 163.7 bits (413), Expect = 1.3e-36 Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of Clc10G06410 vs. NCBI nr
Match: XP_023552345.1 (plant intracellular Ras-group-related LRR protein 6 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 162.2 bits (409), Expect = 3.9e-36 Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy Swiss-Prot
Match: Q6K7R2 (Plant intracellular Ras-group-related LRR protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=IRL6 PE=2 SV=1) HSP 1 Score: 99.4 bits (246), Expect = 4.1e-20 Identity = 59/140 (42.14%), Postives = 83/140 (59.29%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy Swiss-Prot
Match: Q8TCA0 (Leucine-rich repeat-containing protein 20 OS=Homo sapiens OX=9606 GN=LRRC20 PE=1 SV=1) HSP 1 Score: 45.1 bits (105), Expect = 9.2e-04 Identity = 34/86 (39.53%), Postives = 45/86 (52.33%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy TrEMBL
Match: A0A5D3DJP1 (Plant intracellular Ras-group-related LRR protein 6 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold580G00180 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 6.5e-37 Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy TrEMBL
Match: A0A1S3BTH8 (plant intracellular Ras-group-related LRR protein 6 OS=Cucumis melo OX=3656 GN=LOC103493340 PE=4 SV=1) HSP 1 Score: 163.7 bits (413), Expect = 6.5e-37 Identity = 88/129 (68.22%), Postives = 102/129 (79.07%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy TrEMBL
Match: A0A0A0L2M1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G104350 PE=4 SV=1) HSP 1 Score: 161.0 bits (406), Expect = 4.2e-36 Identity = 87/129 (67.44%), Postives = 100/129 (77.52%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy TrEMBL
Match: A0A6J1ENG2 (plant intracellular Ras-group-related LRR protein 6 OS=Cucurbita moschata OX=3662 GN=LOC111435942 PE=4 SV=1) HSP 1 Score: 159.5 bits (402), Expect = 1.2e-35 Identity = 88/129 (68.22%), Postives = 100/129 (77.52%), Query Frame = 0
BLAST of Clc10G06410 vs. ExPASy TrEMBL
Match: A0A6J1CM00 (plant intracellular Ras-group-related LRR protein 6 OS=Momordica charantia OX=3673 GN=LOC111012848 PE=4 SV=1) HSP 1 Score: 158.3 bits (399), Expect = 2.7e-35 Identity = 85/129 (65.89%), Postives = 99/129 (76.74%), Query Frame = 0
BLAST of Clc10G06410 vs. TAIR 10
Match: AT3G15410.1 (Leucine-rich repeat (LRR) family protein ) HSP 1 Score: 129.4 bits (324), Expect = 2.6e-30 Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 0
BLAST of Clc10G06410 vs. TAIR 10
Match: AT3G15410.2 (Leucine-rich repeat (LRR) family protein ) HSP 1 Score: 129.4 bits (324), Expect = 2.6e-30 Identity = 71/128 (55.47%), Postives = 86/128 (67.19%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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