Clc10G06250 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G06250
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	cytochrome c-type biogenesis ccda-like chloroplastic protein
Location	ClcChr10: 8220725 .. 8226391 (+)
RNA-Seq Expression	Clc10G06250
Synteny	Clc10G06250

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CAGAATCACTCTCTAACTTTCGTTACTTTCTTCTTCTTCGTGTTTGTGGGCAGAAGAAATCTTTGGCAACTACCAACTTCTCCACTACCTCTGCTCTCTATTCCAGATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCCGCATCAATTCCATCAAAATTTCAACCTCTAAACGTTTACAACTGCCCAACACGCCAGGTAATAATACCTTTCATTTGGTTCTATATCAAAGTCAATGACTGAAACACCACTTCAAGATGTAGACGAACTTTCGGTTGATTCCCACATCGTAATGAAGTATTGGGTATTGAATGGTTTATCTAGGGAGAACGTTTAGGGTACATTTTGTGAGATTAACTGTGGGGGGATGTTTTGATCATGATGTATTCAACTGTCTCATAGAGGGTCACTGGTTTCTTTAGGTAAATATGTCGTGCCTATGAAATTTCTTGGGAGAAAATCCGCAGCTGATGATCAAAATAAAGATGTTGAGTTGGTGGAGATTAAAAACAGCAGCAATTATTTTCAAGCCATGGCTTTTGTAAATGCCATTTCTGGTAATGCTTCTGCACTCTGCCTCAGGTGGAAGATTGTTCTACTTCAATCTTGTTATAATCATTTATCTATGTTCTGTTTCAATTGATAGTTTGTTCATTAGATGACTATGCTTGGTTATTTCATAAGTAGCCATAAGCAATCTGGTATATGGTATCAAGGCAACCTCTTACTCTCAAATCCTATGTTTTCACTCCTAGTAAAATAAAATACATCTTGGGCTTTATCCCTGCTGTGGTTTAGTATGAATGAATATTCTTAATTTTATTTCATTTTCAATATTCCAGCGACAAGTTTCCTTGCAGTAGATGCCGCGAAGGCTGAAACTTTAAAGCATATGTGGGTAAGAGTTTATAGTCCTCGTTTATTTTGTTTTCTAAAGCGACCTGAATCTATATCATTTTCAGACTTTAATTCCCTAAAACCCATTTATTTCATTACTTTTTAAGATTTTGAATATCATTTTTCACCATTTCCTTGAGAATCTTGATGAAATCTTGATGTATTTCTATTTCCCCTTGGACATAGTCGTGAGATGTTTCTTTATTTGGTGAGTTTCAATTGTTTGTGCTTTTATGATGGCAAAGATTTTGATTGTTTATTTATTTTACTATTTTTTGGGGTGAGGGTATGGGCGTGCCAGATAAGAATGGTTAATTCATCATGACTTCAACAGAAACCCGAAGCTTGGTAACAGGGCTGCTCTTTAGCATTTCTTAGGTTGCTTGCTTAAGATGTTGGTCTCTATCAATTGAATATCATGGTAACTAAATTAGTCTGCGTACATATTTTGCTTGGTGTATAACTGTACATTATATCAGGAACTAGAATTATTTTCCTTCAAGTCAGGAAGGAGCTGCTTCTGTTTATACTCTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTGTCTGCTCTTAGTTTTACAAGGTCCAGTCTTGTTTTTCTGCACTTTGCTTTTCATGTCTTTTAATGCCTTGAATTTGATAGTAAACGGCTCTTTATTATTTATCTGCCCTTGACTACTTATTCCTTTGTACAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACAAGTCTTTCCCCTTGCACACTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGTAAGCATTTCATACACACGTTTTTGCAATCTCGGTATGTTATTTTCGGTCTTATGTTGATGTGGTGATCCAACGAAACTTTGTAGGAGCTTTTGGATCAGGGAAGAGCAAAGCAGAGGTGAATTACTTTCTAAGCAAGTTCCAACTTTCTCCTCTTGCTCTGTGTGATCGTAGTATCAAATTATAGAAATCTTTTAATCATGTGAGCTCAACATTCAAGATCCTAGGCTCCGCCCTTTAGATGGAAACTTGGAAAGTTTAGGCCTGGTTTGATAACCTTTTTTTTTTTTTTCTTTAATTTTTAGTTTTTGAAAATTGAACTTGTAAACTCTATTTCCACCCATTGTTCGGTTCTCTACTTTCTACAAATATTTTCAATAGCAAGTCAAGTTTTCAAAAATAGAATAAAGTAGTTTTCAAAAACTAGTTATTTTTTTAAGAATTTGACTTGGAATTCAATTATTTCTTTAACAAAAGTTAACCATAATCGGAAAATTGAGAGAAACGAGCATAAATTTTAAAAACAGATAACTAAAAACCAAATCACTGAATCATTAGAGCCTTGATAATTTATAACCCTTGTTATCTCTGTGAGTTGGGCTTGGTGTAGACAAATCCTTCATGAGATTAGTGGGGTAGGCCATGAGTATGTTGTAAGAAGTAGGGGCCTTCAACACCCTGGTTATAGAAAAATAATAATAATAAACTAGGACTAGAAAGAAATTATTCAATGGTTCTGTGATGCTAGAGTCTTATTATTCGGTCCAGATTTATCATCATTGTTACTGTATCTTCTAGTTGCTTTGAACTTGAGTGCATTTCTATCGAAATATATGAATCAATGCGAGGGTAGTAAGGGATATCTTGGTTGTAGTAATAGGATATTAGTAAGGGCATAGTGGTAATTAGTTAGTGCTGCTTTGGTTAAAATAAGGAAAGTTGGGCACCTTAGGGAATCATTTTGTTTAGTCAAGACTCAATCCTAAGTGGATTTGTTGTGGGAGAGAGATGGCGCTCTCACAAGACTATTGATATTGCAATATAGTTATCTTTACTTCTTTAGTTTTTCATATTTTTTTCTGTTTGGTGTCCTAACAGAATCCTTCTAGGCTTCTACTGTTCGGGATGAATATACATGTTTATGTGATATAGATTTTATAGAAAGGCAGTTAATTGGAATTTGGTCTCTTTATATTTTCAGGTTGTTGGAAACTCCGTTGCTTTCTCATTAGGACTTGCTACGACCCTGGCGCTGTTAGGTATAGCAGCTTCTTTTGCTGGCAAGGCATATGGACAGATTGGCCAAGGATTACCATTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCTTAAACCTACTGGAGGTACTTATTAAAGCAGGATTAGTTGTATGGACTACCAAGTTGCAAACTTGATTATTTATTTATTTTTGCGAGCAGAACACTTGAAATTGAAATGCTAATTTTGGGAGAAGGGTTGACGTTGGCCAATGTTTTTCCCATCTTTATCATTTAACACCTGAAATCTTTTCAACTGAAAGTTTTGCATAAATGTTCTATAATGTAATTTGTATCTTCGTAAGAACATGAACCCATGATATGGAACTGTCCTGGAGTTACTATCGTTGATTTATTTATTTATTTTTATTTCTTTTCATTTTGATGACTAAAAAAGGCATAAGGCACAAAGATTGAAGGGTACTCTGGTGTATCATTACCTATTACTCGGAATCATCTTTCTTTTGTGGAAAGACTAATTAAATTTGTCTCATTATAAATGATATTAGTTTCACTTATTTGTATTTGTTAGTGGGTTGCAGAACCAGATAACTAAGTACTCAGACTGCTTTTTCACAATTTCATTTTGGTTTAGTCTTCTGATGGATTGATTCTACAATTTGTCATGAATTGCAGATAATTGAGTTGCGACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCGGCTGCCAGCTTTCCATCAAGTAATTGGCCTCTCCATTTCTTTTTGTCCACTGGTTACTTTTCTGGATGCTCTAACATGGTTTTAAATCTGATGTATTAGGTGTGCAAGCGTATCTAGCCGGGCTAACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCCACATCCAAGGTGCCTTAAATCGTTTCTTATGCTGATACGACTCTGATCTTAGTTTCAGTGGATTGAATCATATAAATAATTCTTTGGAAAAGAATCCAATAAAATTAAAAAAATGACCTGTCTATATGTTATCGACCAGTTGCAGGTTTTGATTTCATCTCATGGTTCTTACCATATATTTAAAATATATTCAACAAACTTGTTTGCCTCTCTCATACACATACTTCTATAAAATGAATGGAAAATAGAGGATACAATATACCCTTATTGGTTGTATGATGATAGGCTACTTTTCCAAGGGCTAGGGTTGGTTAGAGCTTCCCTCTTCAATCGAGGGGCATACTCCTAAGTTGAAAATTTGATCAATTAGAGGGTGTTTGGGCCACCAACTTCAAGTTGGTGGAGTGGACTATGTTTGGAGCTCCAATTATAATAGTTGGTATTTTCAATTATTATAACCTACAATTAACTAGAATATTATTATTTCAAATCCCTCTTTGTTGTAGTGTTTACTATTTCCTACTCATCTTATCTTTCCCTCTTTGTTACTATGTTTACTATTTCTTATATAGACTAAAATAATCTGGACTCCAAATACAGATTATAATAACCACTAATTATAATGACTAAGACTAACTTAGCGTCCTAAATATCCCCGCGAAGTTCTTGTTCTCTCTTAAAGCTGGCCTTGGAGCAAGTGAAACCTCTTAAGAGAATCAATAGGGTTGATAATGTAATTGTGGTAGAAGGAAATTGCAATCCTTTCCTTAGTGTTCCCTGTTAATGATTTTTTTTTATAACAGGATCCCGTCATCGGGGGTAGCCTCCTTTTGACATACACAACCGGCTACGTCATGCCGTTGCTTCTGGCTGCCTCATTTGCTGGAGCATTGCAGGTATTGTGGTTATAGTAGGAAGAACTTACCTGCATATCGATATTTTGTTTGCAATGCAGTATAAGTTTATCAGGTGACTTATCAAAAGTTTTCCCCTATGTTATTTTCGACACTTTAGTTCATTGTAGACTGTAATCTCGTGTCTTGTTGTCTAATTGACTCTTGCATGCCTGCAGAGCCTTCTGTCGTTCCGCAAGTTCTCATCATGGATTAATCCTATAAGGTAATTCCTTTAAACTCATCCTCACACCAATAAGATAACAGATAGATAAATATGTTTAATTTCAAAAGATTGGCCGTTGAACACAAGAAAAAAACATGAGGTTCAACTTCAAAACACAATCAATGATATTTTCTACAAATGCATATAAGAAATGTCACTCTTCTCAAAATTATTCTAAACTCACAGAAAACACATCCAAACAGTCAATTACATGTTAAAAGCATGTAGTTAATATAAATAAATTTACTGTCACTGGTTAGCCTAAGTTTTTGAGTTGGATTGTTGATTGACAGTTTGAAACTCGATTTGTTTGACTTCAGAATTTTGAAATAAGATGTTTGAAATGGGATTTGTTTGTTGTTTGATGCATGCAGTGGTGCATTACTGTTGAGTGGAGGTATTTATACATTCTTGGACAGATTATTTCCAGTCACAATGGCAATGTAAAGATATAACAAATGCTTACAAACTCCTTAGATAAATGATGAGGTTATAATGTTGCTCTCATTCAATGGCCCATATATTTCTGTGTTTCTTTTGGCTTCACTCTCTTTAATTTTATGTGGATAAGATCAACCGCCATAAATATCATAATATCATTCATTCAAGTTTCAACAATAATCTATTACCGACTTAGTAAGGCTGTAATTCTCATCTTC

mRNA sequence

CAGAATCACTCTCTAACTTTCGTTACTTTCTTCTTCTTCGTGTTTGTGGGCAGAAGAAATCTTTGGCAACTACCAACTTCTCCACTACCTCTGCTCTCTATTCCAGATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCCGCATCAATTCCATCAAAATTTCAACCTCTAAACGTTTACAACTGCCCAACACGCCAGGTAAATATGTCGTGCCTATGAAATTTCTTGGGAGAAAATCCGCAGCTGATGATCAAAATAAAGATGTTGAGTTGGTGGAGATTAAAAACAGCAGCAATTATTTTCAAGCCATGGCTTTTGTAAATGCCATTTCTGCGACAAGTTTCCTTGCAGTAGATGCCGCGAAGGCTGAAACTTTAAAGCATATGTGGGAAGGAGCTGCTTCTGTTTATACTCTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTGTCTGCTCTTAGTTTTACAAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACAAGTCTTTCCCCTTGCACACTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGAGCTTTTGGATCAGGGAAGAGCAAAGCAGAGGTTGTTGGAAACTCCGTTGCTTTCTCATTAGGACTTGCTACGACCCTGGCGCTGTTAGGTATAGCAGCTTCTTTTGCTGGCAAGGCATATGGACAGATTGGCCAAGGATTACCATTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCTTAAACCTACTGGAGATAATTGAGTTGCGACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCGGCTGCCAGCTTTCCATCAAGTGTGCAAGCGTATCTAGCCGGGCTAACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCCACATCCAAGGATCCCGTCATCGGGGGTAGCCTCCTTTTGACATACACAACCGGCTACGTCATGCCGTTGCTTCTGGCTGCCTCATTTGCTGGAGCATTGCAGAGCCTTCTGTCGTTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGTGCATTACTGTTGAGTGGAGGTATTTATACATTCTTGGACAGATTATTTCCAGTCACAATGGCAATGTAAAGATATAACAAATGCTTACAAACTCCTTAGATAAATGATGAGGTTATAATGTTGCTCTCATTCAATGGCCCATATATTTCTGTGTTTCTTTTGGCTTCACTCTCTTTAATTTTATGTGGATAAGATCAACCGCCATAAATATCATAATATCATTCATTCAAGTTTCAACAATAATCTATTACCGACTTAGTAAGGCTGTAATTCTCATCTTC

Coding sequence (CDS)

ATGAGTCTCCTTATGAGCCATTCTGGTGGTTTCCGCATCAATTCCATCAAAATTTCAACCTCTAAACGTTTACAACTGCCCAACACGCCAGGTAAATATGTCGTGCCTATGAAATTTCTTGGGAGAAAATCCGCAGCTGATGATCAAAATAAAGATGTTGAGTTGGTGGAGATTAAAAACAGCAGCAATTATTTTCAAGCCATGGCTTTTGTAAATGCCATTTCTGCGACAAGTTTCCTTGCAGTAGATGCCGCGAAGGCTGAAACTTTAAAGCATATGTGGGAAGGAGCTGCTTCTGTTTATACTCTGGCTGATGGTGGCATTGGAGATTGGTTTGGAGGCTTCTTGTATTCAGCTGGACAACAGGCTAATGTTGCAGTTCAGGATCAGTTGTCTGCTCTTAGTTTTACAAGTTTGGCAGTAATTTTTGGGGCAGGGTTCGTAACAAGTCTTTCCCCTTGCACACTGAGTGTTTTGCCTTTGACCCTTGGTTACATAGGAGCTTTTGGATCAGGGAAGAGCAAAGCAGAGGTTGTTGGAAACTCCGTTGCTTTCTCATTAGGACTTGCTACGACCCTGGCGCTGTTAGGTATAGCAGCTTCTTTTGCTGGCAAGGCATATGGACAGATTGGCCAAGGATTACCATTGGCTGCTTCAGGCTTAGCTGTTATTATGGGCTTAAACCTACTGGAGATAATTGAGTTGCGACTACCCTCATTCTTCGACAATTTCGATCCCCGTTCTGCGGCTGCCAGCTTTCCATCAAGTGTGCAAGCGTATCTAGCCGGGCTAACATTTGCTTTGGCTGCATCTCCTTGCAGTACTCCTGTGCTGGCTACTTTACTTGGATATGTAGCCACATCCAAGGATCCCGTCATCGGGGGTAGCCTCCTTTTGACATACACAACCGGCTACGTCATGCCGTTGCTTCTGGCTGCCTCATTTGCTGGAGCATTGCAGAGCCTTCTGTCGTTCCGCAAGTTCTCATCATGGATTAATCCTATAAGTGGTGCATTACTGTTGAGTGGAGGTATTTATACATTCTTGGACAGATTATTTCCAGTCACAATGGCAATGTAA

Protein sequence

MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKNSSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM

Homology

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BLAST of Clc10G06250 vs. NCBI nr
Match: XP_038903027.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X2 [Benincasa hispida])

HSP 1 Score: 640.6 bits (1651), Expect = 8.2e-180
Identity = 338/359 (94.15%), Postives = 352/359 (98.05%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MSLLMSHSGGF INS KI +SKRLQ  +TPGKYV+P+KFLGR+SAADDQ+KD+ELVE KN
Sbjct: 1   MSLLMSHSGGFSINSFKIKSSKRLQQSSTPGKYVMPIKFLGRQSAADDQSKDIELVENKN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAA+VYTLADGGIGDWFGGFLYSAG
Sbjct: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAAAVYTLADGGIGDWFGGFLYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF
Sbjct: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           FDNFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLAT+LGYVATSKDP+IGGSLLLT
Sbjct: 241 FDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATILGYVATSKDPIIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLL GG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. NCBI nr
Match: TYK03271.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 635.2 bits (1637), Expect = 3.5e-178
Identity = 338/359 (94.15%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS+LMS+SGGF INSIKISTSKRL  PNTPGKYV+P+KFLGR+SAADDQ KD+ELVE +N
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCKDIELVENRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. NCBI nr
Match: XP_008452288.1 (PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Cucumis melo])

HSP 1 Score: 633.6 bits (1633), Expect = 1.0e-177
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS+LMS+SGGF INSIKISTSKRL  PNTPGKYV+P+KFLGR+SAADDQ +D+ELVE +N
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCEDIELVENRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. NCBI nr
Match: XP_038903026.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Benincasa hispida])

HSP 1 Score: 633.6 bits (1633), Expect = 1.0e-177
Identity = 338/366 (92.35%), Postives = 352/366 (96.17%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MSLLMSHSGGF INS KI +SKRLQ  +TPGKYV+P+KFLGR+SAADDQ+KD+ELVE KN
Sbjct: 1   MSLLMSHSGGFSINSFKIKSSKRLQQSSTPGKYVMPIKFLGRQSAADDQSKDIELVENKN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMW-------EGAASVYTLADGGIGDWFG 120
           SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMW       EGAA+VYTLADGGIGDWFG
Sbjct: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWNYFPSSQEGAAAVYTLADGGIGDWFG 120

Query: 121 GFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK 180
           GFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK
Sbjct: 121 GFLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGK 180

Query: 181 SKAEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII 240
           S+AEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII
Sbjct: 181 SRAEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEII 240

Query: 241 ELRLPSFFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVI 300
           ELRLPSFFDNFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLAT+LGYVATSKDP+I
Sbjct: 241 ELRLPSFFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATILGYVATSKDPII 300

Query: 301 GGSLLLTYTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLF 360
           GGSLLLTYTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLL GG+YTFLDRLF
Sbjct: 301 GGSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYTFLDRLF 360

[Close]

BLAST of Clc10G06250 vs. NCBI nr
Match: XP_011650559.1 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X4 [Cucumis sativus] >KGN56224.2 hypothetical protein Csa_010801 [Cucumis sativus])

HSP 1 Score: 610.5 bits (1573), Expect = 9.1e-171
Identity = 327/359 (91.09%), Postives = 343/359 (95.54%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS L+S+SG F INSI+ISTSK    PNTPGK+V+PMKFLG +S ADDQ K +ELV+ +N
Sbjct: 1   MSFLVSNSGAFIINSIQISTSKH---PNTPGKHVMPMKFLGTQSVADDQCKHIELVKNRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLL GG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFPVTMAM 356

[Close]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot
Match: Q2QY07 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA2 PE=3 SV=1)

HSP 1 Score: 425.6 bits (1093), Expect = 5.5e-118
Identity = 226/283 (79.86%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 74  ISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQLSA 133
           ++  S +A  AA A  +     G++ +  LAD  IGDWFG  LYSAGQQAN AVQDQLSA
Sbjct: 77  VAVGSLVAAGAANATEIGDSLLGSSGL-ALADLSIGDWFGNLLYSAGQQANEAVQDQLSA 136

Query: 134 LSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLATTL 193
           LSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK ++EVVGNSVAFSLGLATTL
Sbjct: 137 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTL 196

Query: 194 ALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAAASF 253
           A+LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IEL+LPSFF ++DPR+AAA+ 
Sbjct: 197 AILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANL 256

Query: 254 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLLLAA 313
           PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+DP++GGSLLLTYTTGYV PLL+AA
Sbjct: 257 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAA 316

Query: 314 SFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVT 357
           SFAGALQSLLSFR++S+WINPISGA LL GG+YT LDRLFP T
Sbjct: 317 SFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 358

[Close]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot
Match: Q2RAR6 (Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=CCDA1 PE=2 SV=1)

HSP 1 Score: 425.2 bits (1092), Expect = 7.1e-118
Identity = 225/283 (79.51%), Postives = 253/283 (89.40%), Query Frame = 0


Query: 74  ISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQLSA 133
           ++  S +A  AA A  +     G++ +  LAD  +GDWFG  LYSAGQQAN AVQDQLSA
Sbjct: 82  VAVGSLVAAGAANATEIGDSLLGSSGL-ALADLSVGDWFGNLLYSAGQQANEAVQDQLSA 141

Query: 134 LSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLATTL 193
           LSFTSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGK ++EVVGNSVAFSLGLATTL
Sbjct: 142 LSFTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKDRSEVVGNSVAFSLGLATTL 201

Query: 194 ALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAAASF 253
           A+LG+AASFAGKAYGQ+GQGLP+AASGLAVIMGLNLLE+IEL+LPSFF ++DPR+AAA+ 
Sbjct: 202 AILGVAASFAGKAYGQVGQGLPVAASGLAVIMGLNLLEVIELQLPSFFSDYDPRAAAANL 261

Query: 254 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLLLAA 313
           PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+DP++GGSLLLTYTTGYV PLL+AA
Sbjct: 262 PSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPIVGGSLLLTYTTGYVAPLLIAA 321

Query: 314 SFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVT 357
           SFAGALQSLLSFR++S+WINPISGA LL GG+YT LDRLFP T
Sbjct: 322 SFAGALQSLLSFRRYSAWINPISGAFLLGGGVYTLLDRLFPAT 363

[Close]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot
Match: Q9M5P3 (Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thaliana OX=3702 GN=CCDA PE=1 SV=1)

HSP 1 Score: 423.7 bits (1088), Expect = 2.1e-117
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 72  NAISATSFLAVDAAKAETLKH-MWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQ 131
           + +   + + + +AKA  LK  + + A S+Y LA+G +GD  G FLYSA QQAN AVQDQ
Sbjct: 65  SGLGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQ 124

Query: 132 LSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLA 191
           LSALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+ +V+G++VAF+LGLA
Sbjct: 125 LSALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLA 184

Query: 192 TTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAA 251
           TTLALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIEL+LPSFF+NFDPR+AA
Sbjct: 185 TTLALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAA 244

Query: 252 ASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLL 311
           A+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+DPVIGGSLLLTYTTGYV PL+
Sbjct: 245 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLI 304

Query: 312 LAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFP-VTMAM 360
           +AASFAGALQSLLS RK S+WINPISGALLL GG+YTFLDRLFP  TM M
Sbjct: 305 VAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

[Close]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot
Match: P51364 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea OX=2787 PE=3 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 5.1e-23
Identity = 70/237 (29.54%), Postives = 126/237 (53.16%), Query Frame = 0


Query: 116 LYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSK 175
           LY++    N     QL+ ++  S + +F +G  TS SPC +S+LP+ + YI   G   S+
Sbjct: 7   LYNSQHLINNITLYQLNHINIASFSFVFFSGLFTSFSPCLISILPICIMYISGEGQKLSQ 66

Query: 176 AEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL 235
            + + N   F LG  ++   LG+ A+   K Y Q+  G+P+ ++ + + MG +LL I+  
Sbjct: 67  IDKLKNLFFFCLGAISSFTTLGLIATLLAKTYSQLFNGIPVISALVIIYMGFSLLNIV-- 126

Query: 236 RLPSFFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGG 295
             P   +N + R    +   +++ YL+G+   LA S CSTP+  TLL +V ++ +  IG 
Sbjct: 127 --PLSTNNLNTRINNTN--QNIKMYLSGVGIGLAISSCSTPIFVTLLIWVTSNHNLFIGL 186

Query: 296 SLLLTYTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRL 353
             +L Y+ GY+ P+++ + F+    +  S    ++   P SG +LLS G ++    +
Sbjct: 187 IFILIYSIGYIFPIIIGSLFSSRFLTTASSPFLNNLWAPFSGTILLSAGTFSLFSSI 237

[Close]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot
Match: Q1XDC3 (Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis OX=2788 PE=3 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 2.0e-19
Identity = 64/208 (30.77%), Postives = 107/208 (51.44%), Query Frame = 0


Query: 115 FLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS 174
           F+Y++    N     QL+ L+ TS + IF +G  TSLSPC +S+LP+ + YI       +
Sbjct: 6   FVYNSQHFVNNITLYQLNHLNSTSFSFIFLSGLFTSLSPCIISILPVCILYIAGETQKLN 65

Query: 175 KAEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE 234
                 N   F LG  ++   LGI A+   K Y Q   G+P  ++ + + MGLNLL I+ 
Sbjct: 66  PINKTKNLFLFCLGTISSFITLGILATLITKTYSQFFNGIPTISAVVIIYMGLNLLNIVH 125

Query: 235 LRLPSFFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIG 294
           +  P F           +   + + YL+G+   +A S CSTP+  TLL ++ +++    G
Sbjct: 126 INSPKF------NGLVTNNNYNFKMYLSGVGIGIAISSCSTPIFVTLLVWINSTQKIFTG 185

Query: 295 GSLLLTYTTGYVMPLLLAASFAGALQSL 323
              +L Y+ GY+ P+++ + F+ +   L
Sbjct: 186 LIFILIYSIGYIFPIIIGSIFSTSFLKL 207

[Close]

BLAST of Clc10G06250 vs. ExPASy TrEMBL
Match: A0A5D3BU70 (Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00980 PE=3 SV=1)

HSP 1 Score: 635.2 bits (1637), Expect = 1.7e-178
Identity = 338/359 (94.15%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS+LMS+SGGF INSIKISTSKRL  PNTPGKYV+P+KFLGR+SAADDQ KD+ELVE +N
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCKDIELVENRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. ExPASy TrEMBL
Match: A0A1S3BSW3 (cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo OX=3656 GN=LOC103493358 PE=3 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.9e-178
Identity = 337/359 (93.87%), Postives = 351/359 (97.77%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS+LMS+SGGF INSIKISTSKRL  PNTPGKYV+P+KFLGR+SAADDQ +D+ELVE +N
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCEDIELVENRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. ExPASy TrEMBL
Match: A0A5A7TZQ7 (Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold230G00300 PE=3 SV=1)

HSP 1 Score: 607.8 bits (1566), Expect = 2.9e-170
Identity = 328/359 (91.36%), Postives = 343/359 (95.54%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDVELVEIKN 60
           MS+LMS+SGGF INSIKISTSKRL  PNTPGKYV+P+KFLGR+SAADDQ KD+ELVE +N
Sbjct: 1   MSILMSNSGGFIINSIKISTSKRLPHPNTPGKYVMPIKFLGRQSAADDQCKDIELVENRN 60

Query: 61  SSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSAG 120
           S NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG LYSAG
Sbjct: 61  SRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGGILYSAG 120

Query: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVG 180
           QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYI  +    S  +VVG
Sbjct: 121 QQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIVNWNI-SSYFQVVG 180

Query: 181 NSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSF 240
           NSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPSF
Sbjct: 181 NSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPSF 240

Query: 241 FDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300
           F+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT
Sbjct: 241 FNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLT 300

Query: 301 YTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           YTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGG+YTFLDRLFPVTMAM
Sbjct: 301 YTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGVYTFLDRLFPVTMAM 358

[Close]

BLAST of Clc10G06250 vs. ExPASy TrEMBL
Match: A0A6J1JAT1 (cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita maxima OX=3661 GN=LOC111483292 PE=3 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 8.3e-170
Identity = 326/360 (90.56%), Postives = 342/360 (95.00%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTPGKYVVPMKFLGRKSAADDQNKDV-ELVEIK 60
           M  LM+HSGGF INSIKISTSKRL L   PGKYV P+ FLG +SAA DQ KD+ E VE  
Sbjct: 1   MGFLMTHSGGFGINSIKISTSKRL-LGRPPGKYVAPLNFLGGQSAALDQTKDIDEFVEST 60

Query: 61  NSSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGGFLYSA 120
           NSSN+F AMAFVNAISATSFLAVDAAKAE+L+HMWEGAASVYTLADGGIGDWFGGFLYSA
Sbjct: 61  NSSNHFHAMAFVNAISATSFLAVDAAKAESLEHMWEGAASVYTLADGGIGDWFGGFLYSA 120

Query: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVV 180
           GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS+AEVV
Sbjct: 121 GQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSRAEVV 180

Query: 181 GNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPS 240
           GNSVAF+LGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIEL+LPS
Sbjct: 181 GNSVAFALGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELQLPS 240

Query: 241 FFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLL 300
           FFDNFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP++GGSLLL
Sbjct: 241 FFDNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIVGGSLLL 300

Query: 301 TYTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFPVTMAM 360
           TYTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLL GG+Y+FLDRLFPVTMAM
Sbjct: 301 TYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGVYSFLDRLFPVTMAM 359

[Close]

BLAST of Clc10G06250 vs. ExPASy TrEMBL
Match: A0A0A0L5A0 (DsbD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099700 PE=3 SV=1)

HSP 1 Score: 604.0 bits (1556), Expect = 4.1e-169
Identity = 327/365 (89.59%), Postives = 343/365 (93.97%), Query Frame = 0


Query: 1   MSLLMSHSGGFRINSIKISTSKRLQLPNTP------GKYVVPMKFLGRKSAADDQNKDVE 60
           MS L+S+SG F INSI+ISTSK    PNTP      GK+V+PMKFLG +S ADDQ K +E
Sbjct: 1   MSFLVSNSGAFIINSIQISTSKH---PNTPGSLVSLGKHVMPMKFLGTQSVADDQCKHIE 60

Query: 61  LVEIKNSSNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGIGDWFGG 120
           LV+ +NS NYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGG+GDWFGG
Sbjct: 61  LVKNRNSRNYFQAMAFVNAISATSFLAVDAAKAETLKHMWEGAASVYTLADGGMGDWFGG 120

Query: 121 FLYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS 180
            LYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS
Sbjct: 121 ILYSAGQQANVAVQDQLSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKS 180

Query: 181 KAEVVGNSVAFSLGLATTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE 240
           KAEVVGNSVAFSLGLATTLALLGI ASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE
Sbjct: 181 KAEVVGNSVAFSLGLATTLALLGIGASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIE 240

Query: 241 LRLPSFFDNFDPRSAAASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIG 300
           L+LPSFF+NFDPRSAAA+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDP+IG
Sbjct: 241 LQLPSFFNNFDPRSAAANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPIIG 300

Query: 301 GSLLLTYTTGYVMPLLLAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFP 360
           GSLLLTYTTGYV+PLLLAASFAGALQSLLSFRKFSSWINPISGALLL GG+YTFLDRLFP
Sbjct: 301 GSLLLTYTTGYVVPLLLAASFAGALQSLLSFRKFSSWINPISGALLLGGGLYTFLDRLFP 360

[Close]

BLAST of Clc10G06250 vs. TAIR 10
Match: AT5G54290.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 423.7 bits (1088), Expect = 1.5e-118
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 72  NAISATSFLAVDAAKAETLKH-MWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQ 131
           + +   + + + +AKA  LK  + + A S+Y LA+G +GD  G FLYSA QQAN AVQDQ
Sbjct: 65  SGLGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQ 124

Query: 132 LSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLA 191
           LSALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+ +V+G++VAF+LGLA
Sbjct: 125 LSALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLA 184

Query: 192 TTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAA 251
           TTLALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIEL+LPSFF+NFDPR+AA
Sbjct: 185 TTLALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAA 244

Query: 252 ASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLL 311
           A+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+DPVIGGSLLLTYTTGYV PL+
Sbjct: 245 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLI 304

Query: 312 LAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFP-VTMAM 360
           +AASFAGALQSLLS RK S+WINPISGALLL GG+YTFLDRLFP  TM M
Sbjct: 305 VAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 354

[Close]

BLAST of Clc10G06250 vs. TAIR 10
Match: AT5G54290.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 423.7 bits (1088), Expect = 1.5e-118
Identity = 229/290 (78.97%), Postives = 258/290 (88.97%), Query Frame = 0


Query: 72  NAISATSFLAVDAAKAETLKH-MWEGAASVYTLADGGIGDWFGGFLYSAGQQANVAVQDQ 131
           + +   + + + +AKA  LK  + + A S+Y LA+G +GD  G FLYSA QQAN AVQDQ
Sbjct: 66  SGLGVANLVTLSSAKAADLKMIVLDQATSIYILAEGSLGDSVGNFLYSANQQANEAVQDQ 125

Query: 132 LSALSFTSLAVIFGAGFVTSLSPCTLSVLPLTLGYIGAFGSGKSKAEVVGNSVAFSLGLA 191
           LSALS TSLAVIFGAG VTSLSPCTLSVLPLTLGYIGAFGSGKS+ +V+G++VAF+LGLA
Sbjct: 126 LSALSVTSLAVIFGAGLVTSLSPCTLSVLPLTLGYIGAFGSGKSRGQVIGDTVAFALGLA 185

Query: 192 TTLALLGIAASFAGKAYGQIGQGLPLAASGLAVIMGLNLLEIIELRLPSFFDNFDPRSAA 251
           TTLALLGI ASFAGKAYGQIGQGLP+AASGLA++MGLNLLEIIEL+LPSFF+NFDPR+AA
Sbjct: 186 TTLALLGIVASFAGKAYGQIGQGLPVAASGLAIVMGLNLLEIIELQLPSFFNNFDPRAAA 245

Query: 252 ASFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSKDPVIGGSLLLTYTTGYVMPLL 311
           A+FPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATS+DPVIGGSLLLTYTTGYV PL+
Sbjct: 246 ANFPSSVQAYLAGLTFALAASPCSTPVLATLLGYVATSRDPVIGGSLLLTYTTGYVAPLI 305

Query: 312 LAASFAGALQSLLSFRKFSSWINPISGALLLSGGIYTFLDRLFP-VTMAM 360
           +AASFAGALQSLLS RK S+WINPISGALLL GG+YTFLDRLFP  TM M
Sbjct: 306 VAASFAGALQSLLSLRKVSAWINPISGALLLGGGLYTFLDRLFPAATMVM 355

The following BLAST results are available for this feature:

BLAST of Clc10G06250 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038903027.1	8.2e-180	94.15	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X2 [Beninca...	[more]
TYK03271.1	3.5e-178	94.15	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Cucumis...	[more]
XP_008452288.1	1.0e-177	93.87	PREDICTED: cytochrome c-type biogenesis ccda-like chloroplastic protein isoform ...	[more]
XP_038903026.1	1.0e-177	92.35	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 [Beninca...	[more]
XP_011650559.1	9.1e-171	91.09	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X4 [Cucumis...	[more]

BLAST of Clc10G06250 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QY07	5.5e-118	79.86	Cytochrome c-type biogenesis ccda-like chloroplastic protein 2 OS=Oryza sativa s...	[more]
Q2RAR6	7.1e-118	79.51	Cytochrome c-type biogenesis ccda-like chloroplastic protein 1 OS=Oryza sativa s...	[more]
Q9M5P3	2.1e-117	78.97	Cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Arabidopsis thal...	[more]
P51364	5.1e-23	29.54	Putative cytochrome c-type biogenesis protein DbsD-like OS=Porphyra purpurea OX=...	[more]
Q1XDC3	2.0e-19	30.77	Putative cytochrome c-type biogenesis protein DbsD-like OS=Pyropia yezoensis OX=...	[more]

BLAST of Clc10G06250 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BU70	1.7e-178	94.15	Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucum...	[more]
A0A1S3BSW3	4.9e-178	93.87	cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucum...	[more]
A0A5A7TZQ7	2.9e-170	91.36	Cytochrome c-type biogenesis ccda-like chloroplastic protein isoform X1 OS=Cucum...	[more]
A0A6J1JAT1	8.3e-170	90.56	cytochrome c-type biogenesis ccda-like chloroplastic protein OS=Cucurbita maxima...	[more]
A0A0A0L5A0	4.1e-169	89.59	DsbD domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G099700 PE=3 S...	[more]

BLAST of Clc10G06250 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G54290.1	1.5e-118	78.97	cytochrome c biogenesis protein family	[more]
AT5G54290.2	1.5e-118	78.97	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003834	Cytochrome C biogenesis protein, transmembrane domain	PFAM	PF02683	DsbD	coord: 142..349 e-value: 3.1E-44 score: 151.4
None	No IPR available	PANTHER	PTHR31272:SF6	CYTOCHROME C-TYPE BIOGENESIS CCDA-LIKE CHLOROPLASTIC PROTEIN	coord: 61..359
None	No IPR available	PANTHER	PTHR31272	CYTOCHROME C-TYPE BIOGENESIS PROTEIN HI_1454-RELATED	coord: 61..359

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G06250.1	Clc10G06250.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045454	cell redox homeostasis
biological_process	GO:0017004	cytochrome complex assembly
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane