Clc10G06240 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G06240
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionProtein RRP5
LocationClcChr10: 8215516 .. 8217943 (+)
RNA-Seq ExpressionClc10G06240
SyntenyClc10G06240
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCCGGGCGAAATTTGGTGGGAACCTTCTTCTAGCTTCTTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTTATCTCTCGGCGATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGGTACAATTTGGTTATTTGGAAACGGCTTATATTGGATAGTATCAGATAGAATGAGAATTGAATCCTCCAGATGTTTGTACATGTCGTTCCTTGTTCACTGTTGCTCTTCTTTTGCTTTAATTTGAGTAGGTTTGAAGTTTAACTAACTTTTTTTCACCTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTGTAAGCTTCTACCTGGGAATTATGGTTAATTTTTTTTTTTATTATTTTTATGGCATAGGACATAGCTTCATGGCAATTCATTCTGCACTCTTGTTCATTTTTTTTCTTTCTTTCGTTTTTCAATTCATGTGTTCTCAGTTCCTAATTTTTGATCATTGGCTTCGTTGAATTGTTGTACGCCCAGAGACTTAGGCTTTCACTATTTCGCATGAAGAAACCTTAATCCCAAATTTGTTCGTTTTGGACCGGATGGGGTTAAAAAACTAGGGCTGATAATTAATGTACACGAGTAAATTGAGCAAGGATAAATGATCTTACCACAAAAAGTGGTGAATGAGCTCCCAGAAAACTCGTGGTTCCCATACTACTAACCTTTCATATTTAGCCACATTATCTTATCATTTTATTTAGTGGGTCACCTATAACTTTAAATGCTACATGGTAAAAGATTAATTAGAACTGTGGGAGAAAAACTTCTTATGGTCGGAAAAATCATTGGAATTCTGTTTTTATACCTTTCTTCTAAGTTTTAACCAAACGTGTGTGATTTTTTTACCCGAGAGTGTAGACTGTTTTTCATGTTTTTTATTTTCAGAATGATACCATTATAATTCTTATAGGCACTTGAGTAGAAGTCAATATAAAAGATAAAGAACTTACAAGATAAACCAAGTCATTTGAGGTACTTTGGACCCTCCCCTCTTGAGACAACATTCAAGTCCTAACTTCCCTGACCAATTTGTAATTACTAATATATCCCCTAATGCCCATAATAACATTCCTTTCAATTTTAATTTCCCAGAAATGTATAAAACATCTGATGCACCCCTCTGATTCATTTCTAGCCACTTGAACTTATCAACAAAGACAGTAAATCAAGAATGAAAGGAGTGCCGAAGCTTTCCTATCACCGTAGCGCTTGATATTTTTGTCTTTCCTGTATTAGTAAAATGTAAAATGATACTATTGGTTTCAATGTTATGAAGACACACATACATTCAAAGTGGTATGATCTATGATGTTCAACTTTTAATGCCTTAAGGATTATGATTGTTTTCAAAGACTTTCTTCATCTCTGAACCTGTATTGGGGTATTATTAGAGTATTAAGGGTATCTTAGTAATTAGCTGGAGAGTTCATTATACCTGTTGGTTATAAATGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGAGAGAATGAGGAAGATGGACAACATTTTGGTGAGTGATTCAAGGTTCAGGAGTGATCTCAAGAGGGAAGGTTCAAGTACCTCAAATAACTTGGTTTATCTTGTAGTTTGATTACCTATTATTTCTCAATATATTTGGGTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGGCAAGGCCGTGTAATTAATACTTGGGATGATATTATTAACCATGTTATTTAGATATGGAAGTAGTGCATGAATGTAACGCACATGACTCACCTCTAGACCTAACAGTTGTTGAAGTTCCATCGAAGTTCCATCTATCAATGAATAAGAATTAGCTGCCTTTTTCCCTGATCATTACTCTACTCTTTGTTGTGACAGAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGAATGTATTATTTTTATTGAAATGTTCCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGTTTTTATGTAAGTTTCTCCACTCACCATTAAGTAATTCAGGTGTATCAATTCTGCAACTTCTGAGTAGCAAGTCACAGTGAGATATAATCTAGTGCCATTAATTTATTTTAGAGTGGGAACTATCTATTTTTTAGTCTATCATCGCTAGCAAGTAGCAATAGAATTAGGAGTTGGAAATTTAATAACGAGTGGGATTTTATTATAATTTGAAAACATGATTCCCC

mRNA sequence

TCCGGGCGAAATTTGGTGGGAACCTTCTTCTAGCTTCTTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTTATCTCTCGGCGATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGAATGTATTATTTTTATTGAAATGTTCCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGTTTTTATGTAAGTTTCTCCACTCACCATTAAGTAATTCAGGTGTATCAATTCTGCAACTTCTGAGTAGCAAGTCACAGTGAGATATAATCTAGTGCCATTAATTTATTTTAGAGTGGGAACTATCTATTTTTTAGTCTATCATCGCTAGCAAGTAGCAATAGAATTAGGAGTTGGAAATTTAATAACGAGTGGGATTTTATTATAATTTGAAAACATGATTCCCC

Coding sequence (CDS)

ATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGA

Protein sequence

MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKNVRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE
Homology
BLAST of Clc10G06240 vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida])

HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36
Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKNRNKKKRSGP+SMDVTENTVH+ PQAMDVSESAVHKP SGA NLKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRSGPVSMDVTENTVHELPQAMDVSESAVHKPTSGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKTKA AKAISKSEQSTEKI+KNQ+KT RIQSAK LYE
Sbjct: 61  VRKTKAMAKAISKSEQSTEKILKNQSKTARIQSAKALYE 99

BLAST of Clc10G06240 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  + PQAMDVSESAVHKPASGA NLKLKKGRPMKRSKN
Sbjct: 278 MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 337

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKT AKAKAISK+EQS EKI+KNQ+KTTRI SAKTLYE
Sbjct: 338 VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 376

BLAST of Clc10G06240 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  + PQAMDVSESAVHKPASGA NLKLKKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKT AKAKAISK+EQS EKI+KNQ+KTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

BLAST of Clc10G06240 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo])

HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKNRNKKKR G +SMDVTEN+VH+ PQAMDVS S VHKPASGA +LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKTKA AKAISKSEQS EKI+KNQ+KTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

BLAST of Clc10G06240 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima])

HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKN+N KKRSG ISMD+TENT H+ PQAMDVSESAVHKPASGA NLKLKKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKT AKAKAISK+EQS EKI+KNQ+KTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 6.9e-34
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKN+NKKKRSG ISMD+TENT  + PQAMDVSESAVHKPASGA NLKLKKGRPMKRSKN
Sbjct: 1   MAKNKNKKKRSGAISMDITENTAQELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKT AKAKAISK+EQS EKI+KNQ+KTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 99

BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKNRNKKKR G +SMDVTEN+VH+ PQAMDVS S VHKPASGA +LKLKKGRPMKRSKN
Sbjct: 1   MAKNRNKKKRGGAVSMDVTENSVHELPQAMDVSASTVHKPASGALDLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKTKA AKAISKSEQS EKI+KNQ+KTTRIQSAKTLYE
Sbjct: 61  VRKTKAIAKAISKSEQSMEKILKNQSKTTRIQSAKTLYE 99

BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33
Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKN+N KKRSG ISMD+TENT H+ PQAMDVSESAVHKPASGA NLKLKKGRPMKRSKN
Sbjct: 1   MAKNKN-KKRSGAISMDITENTAHELPQAMDVSESAVHKPASGALNLKLKKGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRKT AKAKAISK+EQS EKI+KNQ+KTTRI SAKTLYE
Sbjct: 61  VRKTMAKAKAISKNEQSAEKILKNQSKTTRIHSAKTLYE 98

BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25
Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKN 60
           MAKNRNKKK++G +SMD+TE TV D PQAMD SES V K ASG PN K+ KGRPMKRSKN
Sbjct: 1   MAKNRNKKKKNGAVSMDITEPTVSDVPQAMDTSESVVQKSASGFPNRKV-KGRPMKRSKN 60

Query: 61  VRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE 100
           VRK KA AKAISK+EQS EK++KN++KT R QSAK LY+
Sbjct: 61  VRKMKAVAKAISKNEQSVEKVLKNESKTARTQSAKLLYD 98

BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1CP23 (uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012789 PE=4 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24
Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0

Query: 16 MDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKNVRKTKAKAKAISKSE 75
          MD+TENTV D PQAMDVSES VHKP SG  NLKL+KGRPMKRS+NVRKTKA AKAI KSE
Sbjct: 1  MDLTENTVVDLPQAMDVSESGVHKPVSGGLNLKLRKGRPMKRSQNVRKTKAMAKAICKSE 60

Query: 76 QSTEKIMKNQNKTTRIQSAKTL 98
          QS EKIMKNQ+KTTRIQSAKTL
Sbjct: 61 QSAEKIMKNQSKTTRIQSAKTL 82

BLAST of Clc10G06240 vs. TAIR 10
Match: AT4G27380.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 51/156 (32.69%), Postives = 63/156 (40.38%), Query Frame = 0

Query: 1   MAKNRNKKKRSGPISMDVTE--NTVHDRPQAMDVSESAVHKPASGAPNL-KLKKGRP--- 60
           M K RNKK R    SMDV+E  +     PQ MD +E+   K AS A +L   +KG+P   
Sbjct: 1   MTKKRNKKNRDEEASMDVSESQSVSEATPQVMDTTETGDGKLASRARSLMSTRKGKPMKR 60

Query: 61  ---------------------------------------------------MKRSKNVRK 100
                                                              MKR+KN RK
Sbjct: 61  TKIAMNMKAVAVAMDTTETGDVKLATETGDLKVATETGYLKLATLSRNPTNMKRTKNARK 120

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903593.14.0e-3689.90uncharacterized protein LOC120090147 [Benincasa hispida][more]
KAG6577394.11.4e-3385.86Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperm... [more]
XP_022929206.11.4e-3385.86uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothet... [more]
XP_008452291.13.2e-3385.86PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo][more]
XP_022985277.11.2e-3285.86uncharacterized protein LOC111483316 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1EMH06.9e-3485.86uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC1114358... [more]
A0A1S3BUB21.5e-3385.86uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=... [more]
A0A6J1J4F85.9e-3385.86uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316... [more]
A0A6A6MLZ54.5e-2571.72Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1[more]
A0A6J1CP232.2e-2484.15uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
Match NameE-valueIdentityDescription
AT4G27380.11.5e-0432.69unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae -... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 50..67
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..99
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..99
NoneNo IPR availablePANTHERPTHR36385OS07G0562900 PROTEINcoord: 1..99

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G06240.1Clc10G06240.1mRNA