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Clc10G06240 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TCCGGGCGAAATTTGGTGGGAACCTTCTTCTAGCTTCTTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTTATCTCTCGGCGATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGGTACAATTTGGTTATTTGGAAACGGCTTATATTGGATAGTATCAGATAGAATGAGAATTGAATCCTCCAGATGTTTGTACATGTCGTTCCTTGTTCACTGTTGCTCTTCTTTTGCTTTAATTTGAGTAGGTTTGAAGTTTAACTAACTTTTTTTCACCTTGAATCTATAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTGTAAGCTTCTACCTGGGAATTATGGTTAATTTTTTTTTTTATTATTTTTATGGCATAGGACATAGCTTCATGGCAATTCATTCTGCACTCTTGTTCATTTTTTTTCTTTCTTTCGTTTTTCAATTCATGTGTTCTCAGTTCCTAATTTTTGATCATTGGCTTCGTTGAATTGTTGTACGCCCAGAGACTTAGGCTTTCACTATTTCGCATGAAGAAACCTTAATCCCAAATTTGTTCGTTTTGGACCGGATGGGGTTAAAAAACTAGGGCTGATAATTAATGTACACGAGTAAATTGAGCAAGGATAAATGATCTTACCACAAAAAGTGGTGAATGAGCTCCCAGAAAACTCGTGGTTCCCATACTACTAACCTTTCATATTTAGCCACATTATCTTATCATTTTATTTAGTGGGTCACCTATAACTTTAAATGCTACATGGTAAAAGATTAATTAGAACTGTGGGAGAAAAACTTCTTATGGTCGGAAAAATCATTGGAATTCTGTTTTTATACCTTTCTTCTAAGTTTTAACCAAACGTGTGTGATTTTTTTACCCGAGAGTGTAGACTGTTTTTCATGTTTTTTATTTTCAGAATGATACCATTATAATTCTTATAGGCACTTGAGTAGAAGTCAATATAAAAGATAAAGAACTTACAAGATAAACCAAGTCATTTGAGGTACTTTGGACCCTCCCCTCTTGAGACAACATTCAAGTCCTAACTTCCCTGACCAATTTGTAATTACTAATATATCCCCTAATGCCCATAATAACATTCCTTTCAATTTTAATTTCCCAGAAATGTATAAAACATCTGATGCACCCCTCTGATTCATTTCTAGCCACTTGAACTTATCAACAAAGACAGTAAATCAAGAATGAAAGGAGTGCCGAAGCTTTCCTATCACCGTAGCGCTTGATATTTTTGTCTTTCCTGTATTAGTAAAATGTAAAATGATACTATTGGTTTCAATGTTATGAAGACACACATACATTCAAAGTGGTATGATCTATGATGTTCAACTTTTAATGCCTTAAGGATTATGATTGTTTTCAAAGACTTTCTTCATCTCTGAACCTGTATTGGGGTATTATTAGAGTATTAAGGGTATCTTAGTAATTAGCTGGAGAGTTCATTATACCTGTTGGTTATAAATGGGGGGGGGGGGGGGGGGGGGGGGGAGGGGGAGAGAATGAGGAAGATGGACAACATTTTGGTGAGTGATTCAAGGTTCAGGAGTGATCTCAAGAGGGAAGGTTCAAGTACCTCAAATAACTTGGTTTATCTTGTAGTTTGATTACCTATTATTTCTCAATATATTTGGGTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTTGATAGGCAAGGCCGTGTAATTAATACTTGGGATGATATTATTAACCATGTTATTTAGATATGGAAGTAGTGCATGAATGTAACGCACATGACTCACCTCTAGACCTAACAGTTGTTGAAGTTCCATCGAAGTTCCATCTATCAATGAATAAGAATTAGCTGCCTTTTTCCCTGATCATTACTCTACTCTTTGTTGTGACAGAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGAATGTATTATTTTTATTGAAATGTTCCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGTTTTTATGTAAGTTTCTCCACTCACCATTAAGTAATTCAGGTGTATCAATTCTGCAACTTCTGAGTAGCAAGTCACAGTGAGATATAATCTAGTGCCATTAATTTATTTTAGAGTGGGAACTATCTATTTTTTAGTCTATCATCGCTAGCAAGTAGCAATAGAATTAGGAGTTGGAAATTTAATAACGAGTGGGATTTTATTATAATTTGAAAACATGATTCCCC TCCGGGCGAAATTTGGTGGGAACCTTCTTCTAGCTTCTTTTTTTTTTCGTCTTTAGGGTTTTCGTTGTCAATCTCCGCAGCTCTTATCTCTCGGCGATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGAATGTATTATTTTTATTGAAATGTTCCCTTAAATTGTAAAATTTATTTATTTTTGTTCCCTTCATAGGTTTTTATGTAAGTTTCTCCACTCACCATTAAGTAATTCAGGTGTATCAATTCTGCAACTTCTGAGTAGCAAGTCACAGTGAGATATAATCTAGTGCCATTAATTTATTTTAGAGTGGGAACTATCTATTTTTTAGTCTATCATCGCTAGCAAGTAGCAATAGAATTAGGAGTTGGAAATTTAATAACGAGTGGGATTTTATTATAATTTGAAAACATGATTCCCC ATGGCGAAGAACCGGAATAAGAAGAAGCGAAGTGGGCCTATTTCAATGGATGTAACCGAAAACACTGTTCACGACCGCCCTCAAGCGATGGACGTGTCTGAGTCTGCAGTTCATAAACCAGCTTCCGGCGCTCCCAATTTAAAGTTGAAAAAGGGAAGGCCAATGAAGCGATCAAAGAATGTTAGGAAAACAAAAGCCAAGGCGAAGGCCATATCTAAGAGCGAGCAGTCAACGGAGAAAATTATGAAAAATCAGAACAAAACTACCAGAATACAATCTGCAAAAACATTGTATGAATGA MAKNRNKKKRSGPISMDVTENTVHDRPQAMDVSESAVHKPASGAPNLKLKKGRPMKRSKNVRKTKAKAKAISKSEQSTEKIMKNQNKTTRIQSAKTLYE Homology
BLAST of Clc10G06240 vs. NCBI nr
Match: XP_038903593.1 (uncharacterized protein LOC120090147 [Benincasa hispida]) HSP 1 Score: 161.4 bits (407), Expect = 4.0e-36 Identity = 89/99 (89.90%), Postives = 93/99 (93.94%), Query Frame = 0
BLAST of Clc10G06240 vs. NCBI nr
Match: KAG6577394.1 (Chlorophyll a-b binding protein 3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. NCBI nr
Match: XP_022929206.1 (uncharacterized protein LOC111435867 [Cucurbita moschata] >KAG7015471.1 hypothetical protein SDJN02_23107 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 152.9 bits (385), Expect = 1.4e-33 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. NCBI nr
Match: XP_008452291.1 (PREDICTED: uncharacterized protein LOC103493362 [Cucumis melo]) HSP 1 Score: 151.8 bits (382), Expect = 3.2e-33 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. NCBI nr
Match: XP_022985277.1 (uncharacterized protein LOC111483316 [Cucurbita maxima]) HSP 1 Score: 149.8 bits (377), Expect = 1.2e-32 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1EMH0 (uncharacterized protein LOC111435867 OS=Cucurbita moschata OX=3662 GN=LOC111435867 PE=4 SV=1) HSP 1 Score: 152.9 bits (385), Expect = 6.9e-34 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A1S3BUB2 (uncharacterized protein LOC103493362 OS=Cucumis melo OX=3656 GN=LOC103493362 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 1.5e-33 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1J4F8 (uncharacterized protein LOC111483316 OS=Cucurbita maxima OX=3661 GN=LOC111483316 PE=4 SV=1) HSP 1 Score: 149.8 bits (377), Expect = 5.9e-33 Identity = 85/99 (85.86%), Postives = 91/99 (91.92%), Query Frame = 0
BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6A6MLZ5 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025020 PE=4 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 4.5e-25 Identity = 71/99 (71.72%), Postives = 82/99 (82.83%), Query Frame = 0
BLAST of Clc10G06240 vs. ExPASy TrEMBL
Match: A0A6J1CP23 (uncharacterized protein LOC111012789 OS=Momordica charantia OX=3673 GN=LOC111012789 PE=4 SV=1) HSP 1 Score: 121.3 bits (303), Expect = 2.2e-24 Identity = 69/82 (84.15%), Postives = 73/82 (89.02%), Query Frame = 0
BLAST of Clc10G06240 vs. TAIR 10
Match: AT4G27380.1 (unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). ) HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04 Identity = 51/156 (32.69%), Postives = 63/156 (40.38%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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