Clc10G06190 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G06190
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Cytochrome c-type biogenesis protein
Location	ClcChr10: 8146952 .. 8149519 (-)
RNA-Seq Expression	Clc10G06190
Synteny	Clc10G06190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCGGTTCATGGGCTTACGGGTTTTATGCACGCACCTAGTTCGGGCATTCTTGTTGTATTATTTCTGGGTAGGGTTGATTCAGGGGAGCCCCCTCTCGCTGTACTGTCCTAATGAGAATTCATCTCTTCCAGCCTTAGATTGTAATTTGTAACTGGAACTTGATCCGCTGTTTTCTCTCTAACGTGCTCGATGTTTATGAGAGGTTTATCTTTAACTTGTATTTCGCATTCAATGATTTTTTGGTATTTTCTTGCGTTGCAGTTCGGTCAGAGCTTAAAATGGAGACTGATGAGGATGCTGTGAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATCGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTTCTCAGAAAGGTATCAGTTGTTTAGATTAACTCCTAGCTAAACAATTTAACCAACACTTCTTCTCTCTCGTGCAAAATTGCCTCTTTTTTCTCTTTTTAATGATGAAAAACAGAAAAAAAATGGTTACCAGATAATCCAAATAACTACTAAAACCATCTCAATCCAGAAATTTCCAACTTTTCCATGTGGGCAATTGCCAGTTATACTTTAAACCAGAAATCCTCCACCCTCTTTGGCAAGTACCGCAAATTGTCCAGTACTATGTCAACATGCTTTTAAAATAACAATAATATGGGTTCACTGATATTTATGAAGACAAATATAGTGTGAACAAATGGAGTATAAGTTTCCCAGGCAAGTACCAACGGATGTTGAAAGTTTCACAAAAGATGGTTCATGTAAAGGGGCAATGTAGCATGAAGTGGTTCTCTATTTCACAAACCACTTGAAGGCAATAGAAAGAAATTAGAATTTTTTTGGGGGGCTTTCATTATTCCTCATAGAGTTGGTGTTGTGATCCAAGAATTCTTCCTTTAGATTAGTAGATTACCTTCAAAATAACTATCCATGTTGTCAGCCCCTTGGAAATGAATAGTAATTGCCTTGACTTAATATCACAACTTGAGAAATACAAGGAAGCACACTATGCTTTTAGATAGAGTAAACAAAGGGAATAACAGAATAATCAAAATATATAACTTCTCAACAGAAAACAAGTAGACTAACAGGAAATTCTTAAATGATGCATTTTTTTTTTTTTAAGAACTCCATTTAATCACAGTGCCTCTTATGTCATAATGATGGACTAAAAGGACTGATTTACCAGATATTGAATCTTTACTACTTCTACATAACGATTTCAGATTTGTTGAGTTTCTGTTTCCTATGTGTTCTGCGCATAATTCTTGAATCAATATTGTTTTGCTATAAATTTGCTTGATATTGGGTTATGTTCGTTATATAATGATAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGACTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTCAGTTAATATGTGTAAGAAATTCAAGATTAAGTAAATAGTTCTGCCTATTTCTTCTAATTTTGATTCTAAATATGTTACACTTTGGAATAGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATTATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAGGAGAAGCAAGCCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAACCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGAGGCAACTACTCCTTATTGGTAGCTCTAAAAACAGTTCAAAGAGTTTCAAAGTATGTCGAAATCTATAAATTAGATTAGAAATATGAAAAATCAGCATTGAAATGATATGTACTGTATACTCAACGATGGATTTATGATTACTTTTACTAAAAATAAATTGATACTAACATTGTGAATATGAACGTGCACCTTACAATTGTGTTAATATTTGTTTCTTATGGCTAGTTGTTCATAGGCCACACAATTCTAGGTCGTCACCACACTATTCTAGGTCCCAATTTCCGTTCAAAATTCTAAAGTATTATACATTAAGGATAGTTTGGGGACGTTTATGGAAGACCAATGACGATGTTACAACTTTTGAATGATATTTTTGCAACAAAGAGCAAAGTTTTTTTTATACTTTAGCCTCCAATTTATAATGATGAACGTTTGTTGACTGACTCTTCAACTTAGTTTTATTTCTTTTGTTCTTATGGTTGGTGAGTGGAATGATAGGGATGGGATAAGGGGAAACTTCCACCATTAAAAACTCCTTAAAACCAACCTCCATGCAAGCAAGGGACGTACAAAACGCACATTGCATATGCATCTTCGAGTATATACTTCTTTGCTACAGGTATCATATGGATATAGTAATAAAAACTTTGCTCCAGGTCCAACCACGTACAAATAGACACTCTACGGGACTCTTTGGAGCACTGGATTATTTGATTGCCATGAAGATGAGACAAATGGTTAGTTTTTGCAGACAAT

mRNA sequence

GGTTCGGTTCATGGGCTTACGGGTTTTATGCACGCACCTAGTTCGGGCATTCTTGTTGTATTATTTCTGGGTAGGGTTGATTCAGGGGAGCCCCCTCTCGCTGTACTGTCCTAATGAGAATTCATCTCTTCCAGCCTTAGATTTTCGGTCAGAGCTTAAAATGGAGACTGATGAGGATGCTGTGAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATCGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTTCTCAGAAAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGACTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATTATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAGGAGAAGCAAGCCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAACCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGAGGCAACTACTCCTTATTGGTAGCTCTAAAAACAGTTCAAAGAGTTTCAAAGTCCAACCACGTACAAATAGACACTCTACGGGACTCTTTGGAGCACTGGATTATTTGATTGCCATGAAGATGAGACAAATGGTTAGTTTTTGCAGACAAT

Coding sequence (CDS)

ATGGGCTTACGGGTTTTATGCACGCACCTAGTTCGGGCATTCTTGTTGTATTATTTCTGGGTAGGGTTGATTCAGGGGAGCCCCCTCTCGCTGTACTGTCCTAATGAGAATTCATCTCTTCCAGCCTTAGATTTTCGGTCAGAGCTTAAAATGGAGACTGATGAGGATGCTGTGAAAAAAACCCAGCTGGTGGAAGCCCGAGCAAGAAATATTAGTCACAATGTTAGGTGTATCGAGTGCGGTAGTCAATCCATTGAAGATTCACAAGCAGATATTGCGATTCTTCTCAGAAAGTTGATCCGTGATGAGATTCGGTCTGGGAAAACGGACAAGGAGATCTATAAAAAGCTTGAGAATGACTATGGGGAGACGATCCTTTATACCCCAAAGTTTGACCTTCAAACTGCAGCATTATGGCTATCACCGGTGTTAGTGGCTGGTGCTGCTGCAGGAGTATGGGCTTATAGTAAGCACAAGCAAAAGTCTAATGTTCACATTATGGCTTTAAATCTAGTCAGGGGTGTTCCATTGACCCCTAAGGAGAAGCAAGCCATGTTAAATCTCCTCTCACCTCCACCTCCTCAGAGAACCACTTCTTCATGGTGGAGGAGTTGGCGTAGGCAATGA

Protein sequence

MGLRVLCTHLVRAFLLYYFWVGLIQGSPLSLYCPNENSSLPALDFRSELKMETDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALNLVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ

Homology

[Close]

BLAST of Clc10G06190 vs. NCBI nr
Match: XP_008452301.1 (PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_008452302.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >XP_016901245.1 PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo] >KAA0046887.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa] >TYK03260.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 299.7 bits (766), Expect = 2.0e-77
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LLSPPP QRT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Clc10G06190 vs. NCBI nr
Match: XP_022152937.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charantia])

HSP 1 Score: 297.7 bits (761), Expect = 7.6e-77
Identity = 145/158 (91.77%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME+++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LL+PPPPQRT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Clc10G06190 vs. NCBI nr
Match: XP_004149299.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >KGN56203.1 hypothetical protein Csa_010849 [Cucumis sativus])

HSP 1 Score: 297.4 bits (760), Expect = 9.9e-77
Identity = 146/158 (92.41%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           METDEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LLSPPP QRT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Clc10G06190 vs. NCBI nr
Match: XP_038904619.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904620.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida] >XP_038904621.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida])

HSP 1 Score: 295.8 bits (756), Expect = 2.9e-76
Identity = 147/153 (96.08%), Postives = 151/153 (98.69%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKLENDYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWR 204
           LVRGVPLTPKEKQ ML+LLSPPP QRT+SSWWR
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTSSSWWR 153

[Close]

BLAST of Clc10G06190 vs. NCBI nr
Match: XP_022953979.1 (cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953980.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953981.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953983.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022953984.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata] >XP_022992421.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992422.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992423.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992424.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_022992425.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein isoform X1 [Cucurbita maxima] >XP_023549463.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549464.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549465.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >XP_023549466.1 cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita pepo subsp. pepo] >KAG7014070.1 Cytochrome c-type biogenesis CcmH-like mitochondrial protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 291.2 bits (744), Expect = 7.1e-75
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME+D DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           +VRGVPLTP+EKQ ML+LLSPPPPQR  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot
Match: B8AFK5 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. indica OX=39946 GN=CCMH PE=3 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.5e-64
Identity = 119/152 (78.29%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           M T+ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYKKHRQRTNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWW 203
           LVRGVPLTP+EK+ ML++L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot
Match: Q6K7S7 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa subsp. japonica OX=39947 GN=CCMH PE=2 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 4.5e-64
Identity = 119/152 (78.29%), Postives = 138/152 (90.79%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           M T+ED VK+ Q++E+RARNISHNVRC ECGSQSIEDSQADIAILLRKLIRDEI+SGK+D
Sbjct: 1   MATEED-VKQRQIIESRARNISHNVRCTECGSQSIEDSQADIAILLRKLIRDEIKSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKL+ DYGETILYTPKFDLQTAA+WLSPV+V G AAGVWAY KH+Q++NVHIMALN
Sbjct: 61  KEIYKKLQADYGETILYTPKFDLQTAAIWLSPVIVGGVAAGVWAYQKHRQRTNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWW 203
           LVRGVPLTP+EK+ ML++L+PPPP    + WW
Sbjct: 121 LVRGVPLTPREKETMLDVLTPPPP---ANKWW 148

[Close]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot
Match: Q9XI46 (Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thaliana OX=3702 GN=CCMH PE=1 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.9e-52
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPP-PPQRTTSSWWRSW 206
           L+RGVPLTPKE+  +L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot
Match: P45405 (Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110) OX=224911 GN=ccmH PE=3 SV=2)

HSP 1 Score: 85.5 bits (210), Expect = 7.7e-16
Identity = 47/136 (34.56%), Postives = 75/136 (55.15%), Query Frame = 0


Query: 56  DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 115
           D +      E RAR++S  +RC+ C +QSI+DS A +A  LR L+R+ I +G ++ ++  
Sbjct: 25  DEIMSDPAKETRARDLSRELRCMVCQNQSIDDSDAPLARDLRLLVRERIAAGDSNSQVLD 84

Query: 116 KLENDYGETILYTPKFDLQTAALW-LSPVLVAGAAAGVWAYSKHKQKSNVHIMALNLVRG 175
            L   YGE +L  P+F+ QT  LW L P+L+ G    +W   + + +S   + A      
Sbjct: 85  FLVARYGEFVLLKPRFERQTLLLWLLGPLLLTGGGLALWLQIRRRSRSGADLPA------ 144

Query: 176 VPLTPKEKQAMLNLLS 191
            PLTP E+  +  L+S
Sbjct: 145 PPLTPDEEARLAALMS 154

[Close]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot
Match: P45406 (Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX=266834 GN=ccmH PE=3 SV=2)

HSP 1 Score: 79.7 bits (195), Expect = 4.3e-14
Identity = 49/138 (35.51%), Postives = 77/138 (55.80%), Query Frame = 0


Query: 56  DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTDKEIYK 115
           D V     +EARAR IS  +RC+ C +QSI+DS A++A  LR L+R+ +++G +D+ +  
Sbjct: 24  DEVLADPALEARARAISAQLRCMVCQNQSIDDSNAELAKDLRLLVRERLKNGDSDEAVIS 83

Query: 116 KLENDYGETILYTPKFDLQTAALWLSP--VLVAGAAAGVWAYSKHKQKSNVHIMALNLVR 175
            + + YGE +L  P+ + +T  LW  P  +LVAG    V A  +   +          V 
Sbjct: 84  YVVSRYGEFVLLNPRLEAKTLVLWGMPAILLVAGIITLVVAARRRGAR----------VP 143

Query: 176 GVPLTPKEKQAMLNLLSP 192
           G PL+ +EK+ +  LL P
Sbjct: 144 GAPLSDEEKERLDRLLRP 151

[Close]

BLAST of Clc10G06190 vs. ExPASy TrEMBL
Match: A0A1S4DZT6 (Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 9.7e-78
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LLSPPP QRT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Clc10G06190 vs. ExPASy TrEMBL
Match: A0A5A7TY95 (Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold298G00810 PE=3 SV=1)

HSP 1 Score: 299.7 bits (766), Expect = 9.7e-78
Identity = 149/158 (94.30%), Postives = 152/158 (96.20%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME DEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD
Sbjct: 1   MEIDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIYKKLENDYGETILYTPKFDLQTA LWLSPVLVAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KEIYKKLENDYGETILYTPKFDLQTAGLWLSPVLVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LLSPPP QRT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRSWRRQ 158

[Close]

BLAST of Clc10G06190 vs. ExPASy TrEMBL
Match: A0A6J1DHL6 (Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020546 PE=3 SV=1)

HSP 1 Score: 297.7 bits (761), Expect = 3.7e-77
Identity = 145/158 (91.77%), Postives = 156/158 (98.73%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME+++DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESNDDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIY+KLE+DYGET+LYTPKFDLQTAALWLSPVLVAGAAAGVWAY+KHKQK+NVHIMALN
Sbjct: 61  KEIYRKLEDDYGETVLYTPKFDLQTAALWLSPVLVAGAAAGVWAYNKHKQKTNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LL+PPPPQRT SSWWRSWRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLTPPPPQRTASSWWRSWRRQ 158

[Close]

BLAST of Clc10G06190 vs. ExPASy TrEMBL
Match: A0A0A0L351 (Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 PE=3 SV=1)

HSP 1 Score: 297.4 bits (760), Expect = 4.8e-77
Identity = 146/158 (92.41%), Postives = 153/158 (96.84%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           METDEDA+KKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   METDEDALKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           K+IYKKLENDYGETILYTPKFDLQTA LWLSPV+VAGAA GVWAYSKHKQ+SNVHIMALN
Sbjct: 61  KDIYKKLENDYGETILYTPKFDLQTAGLWLSPVIVAGAAVGVWAYSKHKQRSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           LVRGVPLTPKEKQ ML+LLSPPP QRT SSWWR+WRRQ
Sbjct: 121 LVRGVPLTPKEKQTMLDLLSPPPSQRTPSSWWRNWRRQ 158

[Close]

BLAST of Clc10G06190 vs. ExPASy TrEMBL
Match: A0A6J1JTI4 (Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733 PE=3 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 3.4e-75
Identity = 144/158 (91.14%), Postives = 151/158 (95.57%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME+D DAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGK+D
Sbjct: 1   MESDADAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKSD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEI+KKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSK+KQKSNVHIMALN
Sbjct: 61  KEIFKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKYKQKSNVHIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPPPPQRTTSSWWRSWRRQ 209
           +VRGVPLTP+EKQ ML+LLSPPPPQR  S WWR WR Q
Sbjct: 121 IVRGVPLTPREKQTMLDLLSPPPPQRAASLWWRRWRSQ 158

[Close]

BLAST of Clc10G06190 vs. TAIR 10
Match: AT1G15220.1 (cytochrome c biogenesis protein family )

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-53
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPP-PPQRTTSSWWRSW 206
           L+RGVPLTPKE+  +L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

[Close]

BLAST of Clc10G06190 vs. TAIR 10
Match: AT1G15220.2 (cytochrome c biogenesis protein family )

HSP 1 Score: 206.1 bits (523), Expect = 2.8e-53
Identity = 103/156 (66.03%), Postives = 126/156 (80.77%), Query Frame = 0


Query: 51  METDEDAVKKTQLVEARARNISHNVRCIECGSQSIEDSQADIAILLRKLIRDEIRSGKTD 110
           ME  ++  KK Q+++ARARNISHNVRC ECGSQSIEDSQADIAILLR+LIR+EI +GKTD
Sbjct: 1   MEKTDEERKKAQMLDARARNISHNVRCTECGSQSIEDSQADIAILLRQLIRNEIGAGKTD 60

Query: 111 KEIYKKLENDYGETILYTPKFDLQTAALWLSPVLVAGAAAGVWAYSKHKQKSNVHIMALN 170
           KEIY KLE+++GET+LY PKFDLQTAALWL+PV++AG  A    Y KH+ + NV IMALN
Sbjct: 61  KEIYSKLEDEFGETVLYAPKFDLQTAALWLTPVIIAGGTAAGIVYQKHRLRKNVDIMALN 120

Query: 171 LVRGVPLTPKEKQAMLNLLSPP-PPQRTTSSWWRSW 206
           L+RGVPLTPKE+  +L++L PP PP +   S  R W
Sbjct: 121 LIRGVPLTPKERVTILDVLIPPSPPPQGVVSRLRRW 156

The following BLAST results are available for this feature:

BLAST of Clc10G06190 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008452301.1	2.0e-77	94.30	PREDICTED: cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis...	[more]
XP_022152937.1	7.6e-77	91.77	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Momordica charanti...	[more]
XP_004149299.1	9.9e-77	92.41	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucumis sativus] >...	[more]
XP_038904619.1	2.9e-76	96.08	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Benincasa hispida]...	[more]
XP_022953979.1	7.1e-75	91.14	cytochrome c-type biogenesis CcmH-like mitochondrial protein [Cucurbita moschata...	[more]

BLAST of Clc10G06190 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8AFK5	4.5e-64	78.29	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q6K7S7	4.5e-64	78.29	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Oryza sativa sub...	[more]
Q9XI46	3.9e-52	66.03	Cytochrome c-type biogenesis CcmH-like mitochondrial protein OS=Arabidopsis thal...	[more]
P45405	7.7e-16	34.56	Cytochrome c-type biogenesis protein CcmH OS=Bradyrhizobium diazoefficiens (stra...	[more]
P45406	4.3e-14	35.51	Cytochrome c-type biogenesis protein CcmH OS=Rhizobium meliloti (strain 1021) OX...	[more]

BLAST of Clc10G06190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4DZT6	9.7e-78	94.30	Cytochrome c-type biogenesis protein OS=Cucumis melo OX=3656 GN=LOC103493367 PE=...	[more]
A0A5A7TY95	9.7e-78	94.30	Cytochrome c-type biogenesis protein OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A6J1DHL6	3.7e-77	91.77	Cytochrome c-type biogenesis protein OS=Momordica charantia OX=3673 GN=LOC111020...	[more]
A0A0A0L351	4.8e-77	92.41	Cytochrome c-type biogenesis protein OS=Cucumis sativus OX=3659 GN=Csa_3G099640 ...	[more]
A0A6J1JTI4	3.4e-75	91.14	Cytochrome c-type biogenesis protein OS=Cucurbita maxima OX=3661 GN=LOC111488733...	[more]

BLAST of Clc10G06190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G15220.1	2.8e-53	66.03	cytochrome c biogenesis protein family	[more]
AT1G15220.2	2.8e-53	66.03	cytochrome c biogenesis protein family	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR038297	CcmH/CycL/Ccl2/NrfF domain superfamily	GENE3D	1.10.8.640	Cytochrome C biogenesis protein	coord: 49..132 e-value: 1.3E-20 score: 75.1
IPR005616	CcmH/CycL/Ccl2/NrfF family	PFAM	PF03918	CcmH	coord: 54..185 e-value: 5.3E-30 score: 103.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 189..208
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 190..208
None	No IPR available	PANTHER	PTHR47601	FAMILY NOT NAMED	coord: 51..206
None	No IPR available	CDD	cd16378	CcmH_N	coord: 64..129 e-value: 1.70069E-26 score: 94.903

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G06190.1	Clc10G06190.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009793	embryo development ending in seed dormancy
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005743	mitochondrial inner membrane
cellular_component	GO:0032991	protein-containing complex
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016491	oxidoreductase activity