Clc10G05050 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G05050
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionIntegrase core domain containing protein
LocationClcChr10: 5579312 .. 5580842 (+)
RNA-Seq ExpressionClc10G05050
SyntenyClc10G05050
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGGTTGGGATCTCCTCTTGCTACTTGTTCCTCACTCTCGTTACTCTTGCTTCTAAGGGTTTAGGTTTTCCGCTCTCTAAATTTTCTCTCACTACTTGTTATGACTCTCGTTTCTTGATTATTGTTCTCACTTTCGCTCTTTGTCTTCAACTTCTTTCTTTATTTTTTATTTTTTATTAGTAGGGGAGCAAATAGAAAGAGTAGTGAGAGTCCAAAGTAAGGATTGAAAAATATGAATGTATAATAGTGAGAGAAACAAGCAAGAAGATCAAGAGCAAGAGTCAAGAGTCGAGAGCCTAATACGCAATTACAAAGTTTGTTTCGATAATTTATGAGAACTATGAAAGAAGCAAAAAGTAAAAAAAAAAAAAACTTGAATTTAAGAAAACAAAGAAGGGCACAAATTCTATTTTGAACTTAAAATTCGGGTGAATAGTAAAATTATCTCAAAATCAATCCATCATATAGACACAAAACATTCAGCTAAATAAAGAAAAAAAATAAAAGAGAGAAAGAAATAAAATTTTATTAAGCTAAAGGAGAAAACCGGCGGAAGGAGAATAACGCAAAACAGACCATTTTTTCTTAAACCCTATTTCACGTTCAGCCGCACCCCCTCCCCGCCGCCGTACGCTGCACTCTAATCTGCCGCATTCTCACCCTCCCAACGAACTCCCCGCCTCTCCCTCCCTCTCACACTCTCTCGCCTCTCCGAGCAATCAGAGTTACTTATCTCTGTTGTTTTTTCTTTCTTCAGAAATAGAAACAGTGGTTAAACCCCCGCCGTTGGTGAGATCGCACCGCCCCTCACGCGTACGTCCGCTCATTTTTCAGCTCCCGAGGTTTTTATTTTATTTTATTTTATTTTTAATTTTGTTTGTTGAGTTATGTTGGGTTGTTCTGTTCACCCACGAAGATGAAAAAAAAAGGGTTGGAATCGAAAATCTAAATTGTAATGATTGAAATTATTGTTATCCGTTTTAAAGTAAATAACAAATTACAGTGAACCAAGGAAGTATGAAACTTTGGAGTTTGCTTTAATGGTCTTGAGTCTGCTTGAACAGAACACACTATCTATGCATATTGAATATGAACTGGCATAGGACAGCTTAAACTCAATAAAAAAGATACCCTGTAGGGAAAAATTAGAAACGTATTCTTTTAAGTTTTAAATATTGGCAAATTCGCCACGAGTTTTTGGTAAAAAGAAGCAGGTGAAGGCACCAGTACCACAGTCTTGAAAGAGAAGTCGACGCCAAATACAGAGTATGAAACATGGATAGCTGTTGATCAGCTACTCCTGGGCTGGCTTTACAACTCGATGTCTCCGGAAATCGCAACCCAAGCGATCGGGTATCAGACCTCGAAAGATCTTTGGGATGCTGTGCAACAGCTCTTTGGTGTCCAGTCCAAGGCTGAAACCGATTACCTGAAACGCCTCTTTCAACAAACAAGGAAAGACTTCCTCAAAATGGAGGAATATCTAACCACCATGAAAAAATACTCTACAAGTGCTAGCTGGTCTTGA

mRNA sequence

ATGCGGGTTGGGATCTCCTCTTGCTACTTGTTCCTCACTCTCGTTACTCTTGCTTCTAAGGGTTTAGGTGAAGGCACCAGTACCACAGTCTTGAAAGAGAAGTCGACGCCAAATACAGAGTATGAAACATGGATAGCTGTTGATCAGCTACTCCTGGGCTGGCTTTACAACTCGATGTCTCCGGAAATCGCAACCCAAGCGATCGGGTATCAGACCTCGAAAGATCTTTGGGATGCTGTGCAACAGCTCTTTGGTGTCCAGTCCAAGGCTGAAACCGATTACCTGAAACGCCTCTTTCAACAAACAAGGAAAGACTTCCTCAAAATGGAGGAATATCTAACCACCATGAAAAAATACTCTACAAGTGCTAGCTGGTCTTGA

Coding sequence (CDS)

ATGCGGGTTGGGATCTCCTCTTGCTACTTGTTCCTCACTCTCGTTACTCTTGCTTCTAAGGGTTTAGGTGAAGGCACCAGTACCACAGTCTTGAAAGAGAAGTCGACGCCAAATACAGAGTATGAAACATGGATAGCTGTTGATCAGCTACTCCTGGGCTGGCTTTACAACTCGATGTCTCCGGAAATCGCAACCCAAGCGATCGGGTATCAGACCTCGAAAGATCTTTGGGATGCTGTGCAACAGCTCTTTGGTGTCCAGTCCAAGGCTGAAACCGATTACCTGAAACGCCTCTTTCAACAAACAAGGAAAGACTTCCTCAAAATGGAGGAATATCTAACCACCATGAAAAAATACTCTACAAGTGCTAGCTGGTCTTGA

Protein sequence

MRVGISSCYLFLTLVTLASKGLGEGTSTTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMKKYSTSASWS
Homology
BLAST of Clc10G05050 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 19  SKGLGEGTSTTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWD 78
           S G G  +S T L+     N +YE+W+AVDQLLLGWLYNSM+PE+A Q +G + +KDLW 
Sbjct: 28  SSGSGASSSLTALE----VNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWT 87

Query: 79  AVQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMK 118
           ++ QLFGVQS+ E DYL+ +FQ TRK  LKMEEYL TMK
Sbjct: 88  SIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMK 122

BLAST of Clc10G05050 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 120.2 bits (300), Expect = 1.3e-23
Identity = 59/99 (59.60%), Postives = 74/99 (74.75%), Query Frame = 0

Query: 19  SKGLGEGTSTTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWD 78
           S G G  +S T L+     N +YE+W+AVDQLLLGWLYNSM+PE+A Q +G + +KDLW 
Sbjct: 28  SSGSGASSSLTALE----VNPQYESWMAVDQLLLGWLYNSMTPEVAIQVMGCECAKDLWT 87

Query: 79  AVQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMK 118
           ++ QLFGVQS+ E DYL+ +FQ TRK  LKMEEYL TMK
Sbjct: 88  SIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQTMK 122

BLAST of Clc10G05050 vs. NCBI nr
Match: XP_038904321.1 (uncharacterized protein LOC120090675 [Benincasa hispida])

HSP 1 Score: 118.6 bits (296), Expect = 3.8e-23
Identity = 57/99 (57.58%), Postives = 75/99 (75.76%), Query Frame = 0

Query: 19  SKGLGEGTSTTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWD 78
           S G G  +S+T L+     N +Y  W+AVDQLLLGWLYNSM+P+IA Q +G++ ++DLW 
Sbjct: 28  SSGSGASSSSTTLE----VNPQYRAWMAVDQLLLGWLYNSMTPKIAIQVMGFECARDLWI 87

Query: 79  AVQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMK 118
            +QQLFG+QS+AE DYL+ +FQ TRK  LKME+YL TMK
Sbjct: 88  NIQQLFGIQSRAEEDYLRHVFQTTRKGNLKMEDYLRTMK 122

BLAST of Clc10G05050 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 116.3 bits (290), Expect = 1.9e-22
Identity = 52/94 (55.32%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 27  STTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGV 86
           S++ +  ++  N  YE+W+  DQLLLGWLYNSM+PE+ATQ +GY+ + DLW A+Q+LFGV
Sbjct: 21  SSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGV 80

Query: 87  QSKAETDYLKRLFQQTRKDFLKMEEYLTTMKKYS 121
           QS+AE DYL+++FQQTRK  LKM ++L  MK ++
Sbjct: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHA 114

BLAST of Clc10G05050 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 111.7 bits (278), Expect = 4.7e-21
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 28  TTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGVQ 87
           +T  +   T N  YE WI VD+LLLGWLYNSM+ ++A Q +G+ TS++LW AVQ+LFGVQ
Sbjct: 87  STSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQ 146

Query: 88  SKAETDYLKRLFQQTRKDFLKMEEYLTTMKKYS 121
           S+AE DYLK++FQQT K  L+M EYL  MK ++
Sbjct: 147 SRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHA 179

BLAST of Clc10G05050 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.2e-23
Identity = 52/94 (55.32%), Postives = 74/94 (78.72%), Query Frame = 0

Query: 27  STTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGV 86
           S++ +  ++  N  YE+W+  DQLLLGWLYNSM+PE+ATQ +GY+ + DLW A+Q+LFGV
Sbjct: 21  SSSSIATEAAINPLYESWVTTDQLLLGWLYNSMTPEVATQVMGYENACDLWAAIQELFGV 80

Query: 87  QSKAETDYLKRLFQQTRKDFLKMEEYLTTMKKYS 121
           QS+AE DYL+++FQQTRK  LKM ++L  MK ++
Sbjct: 81  QSQAEEDYLRQVFQQTRKGSLKMTDFLRVMKSHA 114

BLAST of Clc10G05050 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 2.3e-21
Identity = 53/93 (56.99%), Postives = 70/93 (75.27%), Query Frame = 0

Query: 28  TTVLKEKSTPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGVQ 87
           +T  +   T N  YE WI VD+LLLGWLYNSM+ ++A Q +G+ TS++LW AVQ+LFGVQ
Sbjct: 87  STSSQSSPTLNPTYEAWIVVDKLLLGWLYNSMAADVAMQVMGFSTSRELWTAVQELFGVQ 146

Query: 88  SKAETDYLKRLFQQTRKDFLKMEEYLTTMKKYS 121
           S+AE DYLK++FQQT K  L+M EYL  MK ++
Sbjct: 147 SRAEVDYLKQVFQQTCKGSLQMIEYLKLMKSHA 179

BLAST of Clc10G05050 vs. ExPASy TrEMBL
Match: A0A5A7VPY0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold418G001000 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 9.5e-20
Identity = 48/82 (58.54%), Postives = 61/82 (74.39%), Query Frame = 0

Query: 36  TPNTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDAVQQLFGVQSKAETDYL 95
           T N +YE WI  D LLLGWLYNSM+PE+  Q +G+  +KDLW+A Q LFG+QS+A+ D+L
Sbjct: 100 TVNPKYERWITTDLLLLGWLYNSMTPEVTIQLMGFTNAKDLWEATQDLFGIQSRAKEDFL 159

Query: 96  KRLFQQTRKDFLKMEEYLTTMK 118
            + FQ T+K  L MEEYL TMK
Sbjct: 160 HQTFQTTKKGNLNMEEYLRTMK 181

BLAST of Clc10G05050 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 24  EGTSTTVLKEKS-TP---NTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDA 83
           EG   T+    S TP   N+ +E W+  D LLLGWLYNSM+P++A Q +G+   +DLWDA
Sbjct: 84  EGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDA 143

Query: 84  VQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMK 118
            Q  FGVQS+AE D+L+++ Q TRK   KMEEYL  MK
Sbjct: 144 TQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMK 181

BLAST of Clc10G05050 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 1.4e-18
Identity = 51/98 (52.04%), Postives = 66/98 (67.35%), Query Frame = 0

Query: 24  EGTSTTVLKEKS-TP---NTEYETWIAVDQLLLGWLYNSMSPEIATQAIGYQTSKDLWDA 83
           EG   T+    S TP   N+ +E W+  D LLLGWLYNSM+P++A Q +G+   +DLWDA
Sbjct: 84  EGADATIGASSSITPRIVNSLFEQWVTTDLLLLGWLYNSMTPDVAIQLMGFTNVEDLWDA 143

Query: 84  VQQLFGVQSKAETDYLKRLFQQTRKDFLKMEEYLTTMK 118
            Q  FGVQS+AE D+L+++ Q TRK   KMEEYL  MK
Sbjct: 144 TQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLLVMK 181

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038905164.11.3e-2359.60uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida][more]
XP_038905161.11.3e-2359.60uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida][more]
XP_038904321.13.8e-2357.58uncharacterized protein LOC120090675 [Benincasa hispida][more]
XP_022148963.11.9e-2255.32uncharacterized protein LOC111017501 [Momordica charantia][more]
XP_022151683.14.7e-2156.99uncharacterized protein LOC111019598 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1D5J09.2e-2355.32uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DCW42.3e-2156.99uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019... [more]
A0A5A7VPY09.5e-2058.54Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SIT71.4e-1852.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BCH91.4e-1852.04Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G05050.1Clc10G05050.1mRNA