Clc10G04460 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G04460
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionRPM1-interacting protein 4-like
LocationClcChr10: 4944304 .. 4945834 (-)
RNA-Seq ExpressionClc10G04460
SyntenyClc10G04460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GAAGACGAAATAAAAAGGCGTTGTCCGTTGTGTAATAAGCACGATTTGGCCGAAACAAAACTTTCTTCTTCTTCTTGTCTCTCTCGCTCGCTCCTCTCCTGCTTCTGGTGTGGCCATCCTCTTTCTTCCCTTCTTCGATTCTTCGTTTATTGGCAAACCAACTTTCTCGAATTCATGTCGGTATGTCATTCCTCTTCCTCCCATCCAATTCCTGTTTTTTCCCTTCTCGATTTATCGCGATCCCTTTTTTTTTTCTTGATTCGATTTACTTCCTCTGATGATTTTTTCTTTCCTCAATTGGGTTTTTTCTATATGTTGATCGTTGATTTTCCCATTCCATGATACCCCTTTTCTTTGATCCTCTTAGATTCACTGCTTTGATTGTTTCCCCCCTTTTGGGAGATTTGCTGATGTTTGTCATGGCTGGATTTTCTCCCTCATTGTTATAATTTTTGTACTCCTTCGTTCAATTCGAAGGATTTGTTCTTAATTTTTGTGAATCCTACGTTTCTCCTCTTGGTTGATTTGTTTCGAAATGTTTCCTCTTCACTCTGATCTTATATCATTTTTGTTTGTTTGAATTGAGTTTCCATTATCATGGTTCTTGGGTGATTTTCTTTTTTTTTTTTCTTTTTTTTTTTTTGTTAATGGAACTTGATCGGCCAAGTTTTGTACTTGACAGAGTTCTGATAAATAAAGGTTATTTCAAATTTTAATCAACTGTTAACAAACATTGGCAATTCTTTCCATTATCTTCTCATCTTTTTATCTCGCACGTTTTTCTTCTAATTTCTGATTTCTGCTATTAATCATGGATTATCTTGTTTTTAGCTCATTAATAGCAGAAAGAGCAGTTTCGTTCAACTTTTTACTTTCAAATCCATGATCTACATATTTTAGGAGAGTAAAGGTTCAAAAATTGAATCCTGATTTTCATTACAGTGTATGACTGGTTTAGATTAACACAACTATTACTTGTAGCATAGCAAGGAAGATACTTTTTTTGGGCTAAATTATAAATTTGGTTTATGAACTTTAGCTCTGTTTTGTCCTTTCAGCTTTTAAAGTTTTCTATATGGTCTTAAACTTTGGTCTATGCTTTTGTCTAATCCTTGCCATTGCATTATTTATAGAAACTGAATGGGCATGCTATCTAAGCATTCCTTTAATAGTGTTAATTGTTAATAGTAGGGACTAGATTGAAGCATAATCAAAGTTTAGAGACATAATTGTTTTAATGTTTAGAATCAAATATGCATTAAGCTTCAAGTATAGGGACTGAATGTATGTATTCTAACAGGAGAAGGGTCAGCCACTTCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTGGAAAGGCACCTCAGGCCAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATAAATGCAATTTTATTCCTAGCCTTTTCTATCATGCCTGA

mRNA sequence

GAAGACGAAATAAAAAGGCGTTGTCCGTTGTGTAATAAGCACGATTTGGCCGAAACAAAACTTTCTTCTTCTTCTTGTCTCTCTCGCTCGCTCCTCTCCTGCTTCTGGTGTGGCCATCCTCTTTCTTCCCTTCTTCGATTCTTCGTTTATTGGCAAACCAACTTTCTCGAATTCATGTCGGAGAAGGGTCAGCCACTTCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTGGAAAGGCACCTCAGGCCAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATAAATGCAATTTTATTCCTAGCCTTTTCTATCATGCCTGA

Coding sequence (CDS)

ATGTCGGAGAAGGGTCAGCCACTTCCGAAGTTTGGTGAATGGGATGTTAATAATCCTGCTTCTGCAGAGGGCTTCACTGTGATCTTTAATAAGGCAAGAGATGAGAAGAAAACCGGTGGCCAACCCGAATCACCTGGAAAGGCACCTCAGGCCAAAAATGTAGCAGATCCTGGCAAACCTCAGGCTGTAAGATGCTATAAATGCAATTTTATTCCTAGCCTTTTCTATCATGCCTGA

Protein sequence

MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQAVRCYKCNFIPSLFYHA
Homology
BLAST of Clc10G04460 vs. NCBI nr
Match: XP_008449047.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 134.0 bits (336), Expect = 5.4e-28
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 61 QAKKWFCC 68

BLAST of Clc10G04460 vs. NCBI nr
Match: XP_004148258.1 (protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 1.6e-27
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKP 60

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 61 QAKKWFCC 68

BLAST of Clc10G04460 vs. NCBI nr
Match: XP_038905925.1 (protein NOI4-like [Benincasa hispida])

HSP 1 Score: 130.6 bits (327), Expect = 6.0e-27
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAK+ ADPGKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKHAADPGKP 60

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 61 QAKKWFCC 68

BLAST of Clc10G04460 vs. NCBI nr
Match: KAG7028294.1 (RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 60/71 (84.51%), Postives = 65/71 (91.55%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKP 60

Query: 61 QAVRCYKCNFI 72
          QAVRC++  F+
Sbjct: 61 QAVRCFERIFM 71

BLAST of Clc10G04460 vs. NCBI nr
Match: KAA0065744.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 3.0e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 62
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA
Sbjct: 2  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 61

Query: 63 VR 65
           R
Sbjct: 62 DR 63

BLAST of Clc10G04460 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 1.1e-20
Identity = 49/77 (63.64%), Postives = 58/77 (75.32%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQA---KNVADP 60
          MS+KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+ +        DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 GKPQAVRCYKCNFIPSL 75
           KPQ  +   C   P++
Sbjct: 61 SKPQPKKWLCCMQAPAV 77

BLAST of Clc10G04460 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 2.9e-08
Identity = 25/64 (39.06%), Postives = 39/64 (60.94%), Query Frame = 0

Query: 3   EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 62
           EK   +PKFG+WD NNP+SA+G+T IFNK R+E+ +G       + P  ++  +P    +
Sbjct: 143 EKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANVSGSSRTPTHQSSRNPNNTSS 202

Query: 63  VRCY 67
             C+
Sbjct: 203 CCCF 206

BLAST of Clc10G04460 vs. ExPASy TrEMBL
Match: A0A1S3BL66 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 2.6e-28
Identity = 63/68 (92.65%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 61 QAKKWFCC 68

BLAST of Clc10G04460 vs. ExPASy TrEMBL
Match: A0A0A0L7F7 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G047910 PE=4 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 7.7e-28
Identity = 62/68 (91.18%), Postives = 65/68 (95.59%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAP+AKNVADPGKP
Sbjct: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPRAKNVADPGKP 60

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 61 QAKKWFCC 68

BLAST of Clc10G04460 vs. ExPASy TrEMBL
Match: A0A5D3CRF8 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00290 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.4e-26
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 0

Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 62
          EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA
Sbjct: 2  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKPQA 61

Query: 63 VR 65
           R
Sbjct: 62 DR 63

BLAST of Clc10G04460 vs. ExPASy TrEMBL
Match: A0A6J1GG65 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111453626 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.0e-24
Identity = 57/68 (83.82%), Postives = 61/68 (89.71%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQAKNVADPGKP 60
          MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKK+GGQPESPG AP+AK  ADP KP
Sbjct: 24 MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKSGGQPESPGNAPKAKPAADPAKP 83

Query: 61 QAVRCYKC 69
          QA + + C
Sbjct: 84 QAKKWFCC 91

BLAST of Clc10G04460 vs. ExPASy TrEMBL
Match: A0A059BWK0 (AvrRpt-cleavage domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGRSUZ_F03683 PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 1.1e-21
Identity = 54/69 (78.26%), Postives = 58/69 (84.06%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKA-PQAKNVADPGK 60
          MSEKGQPLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+PESP KA PQ KN  DP K
Sbjct: 1  MSEKGQPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPESPAKANPQVKNSVDPSK 60

Query: 61 PQAVRCYKC 69
          P   + + C
Sbjct: 61 PPTKKWFCC 69

BLAST of Clc10G04460 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 99.8 bits (247), Expect = 1.1e-21
Identity = 48/67 (71.64%), Postives = 55/67 (82.09%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQA---KNVADP 60
          MS+KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+ +        DP
Sbjct: 1  MSDKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDP 60

Query: 61 GKPQAVR 65
           KPQ V+
Sbjct: 61 SKPQPVK 67

BLAST of Clc10G04460 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 96.7 bits (239), Expect = 9.0e-21
Identity = 47/75 (62.67%), Postives = 56/75 (74.67%), Query Frame = 0

Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQA---KNVADPGK 62
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+ +        DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 PQAVRCYKCNFIPSL 75
          PQ  +   C   P++
Sbjct: 79 PQPKKWLCCMQAPAV 93

BLAST of Clc10G04460 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 95.9 bits (237), Expect = 1.5e-20
Identity = 46/65 (70.77%), Postives = 53/65 (81.54%), Query Frame = 0

Query: 3  EKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGKAPQA---KNVADPGK 62
          +KG+PLPKFGEWDVN+PASAEGFTVIFNKARDEKKTGG+P SPGK+ +        DP K
Sbjct: 19 DKGRPLPKFGEWDVNDPASAEGFTVIFNKARDEKKTGGKPGSPGKSSEGHVKSGGGDPSK 78

Query: 63 PQAVR 65
          PQ V+
Sbjct: 79 PQPVK 83

BLAST of Clc10G04460 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 84.3 bits (207), Expect = 4.6e-17
Identity = 37/47 (78.72%), Postives = 45/47 (95.74%), Query Frame = 0

Query: 1  MSEKGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKTGGQPESPGK 48
          M++KG+PLPKFGEWDVN+P+SAEGFTVIFNKAR+EKK GG+ +SPGK
Sbjct: 1  MADKGRPLPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDSPGK 47

BLAST of Clc10G04460 vs. TAIR 10
Match: AT5G63270.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 72.0 bits (175), Expect = 2.4e-13
Identity = 32/35 (91.43%), Postives = 34/35 (97.14%), Query Frame = 0

Query: 4  KGQPLPKFGEWDVNNPASAEGFTVIFNKARDEKKT 39
          KG+PLPKFGEWDVNNPASAEGFTVIF+KA DEKKT
Sbjct: 5  KGKPLPKFGEWDVNNPASAEGFTVIFSKASDEKKT 39

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008449047.15.4e-2892.65PREDICTED: RPM1-interacting protein 4-like [Cucumis melo][more]
XP_004148258.11.6e-2791.18protein NOI4 [Cucumis sativus] >KGN56031.1 hypothetical protein Csa_009963 [Cucu... [more]
XP_038905925.16.0e-2789.71protein NOI4-like [Benincasa hispida][more]
KAG7028294.13.0e-2684.51RPM1-interacting protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma][more]
KAA0065744.13.0e-2698.39RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK13768.1 RPM1-inte... [more]
Match NameE-valueIdentityDescription
O226331.1e-2063.64Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1[more]
Q8GYN52.9e-0839.06RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A1S3BL662.6e-2892.65RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103491035 PE=4 SV=... [more]
A0A0A0L7F77.7e-2891.18AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G04... [more]
A0A5D3CRF81.4e-2698.39RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_... [more]
A0A6J1GG651.0e-2483.82RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111453626 PE... [more]
A0A059BWK01.1e-2178.26AvrRpt-cleavage domain-containing protein OS=Eucalyptus grandis OX=71139 GN=EUGR... [more]
Match NameE-valueIdentityDescription
AT5G55850.11.1e-2171.64RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.39.0e-2162.67RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G55850.21.5e-2070.77RPM1-interacting protein 4 (RIN4) family protein [more]
AT2G04410.14.6e-1778.72RPM1-interacting protein 4 (RIN4) family protein [more]
AT5G63270.12.4e-1391.43RPM1-interacting protein 4 (RIN4) family protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008700RIN4, pathogenic type III effector avirulence factor Avr cleavage sitePFAMPF05627AvrRpt-cleavagecoord: 3..38
e-value: 1.1E-23
score: 82.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 32..59
NoneNo IPR availablePANTHERPTHR33159:SF59RIN4, PATHOGENIC TYPE III EFFECTOR AVIRULENCE FACTOR AVR CLEAVAGE SITE-RELATEDcoord: 2..67
IPR040387RPM1-interacting protein 4/NOI4PANTHERPTHR33159RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEINcoord: 2..67

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G04460.2Clc10G04460.2mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005886 plasma membrane