Clc10G04030 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G04030
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	C2H2-type domain-containing protein
Location	ClcChr10: 4410780 .. 4413041 (+)
RNA-Seq Expression	Clc10G04030
Synteny	Clc10G04030

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTCTCGATGAAGGTTTCTAAAGCTATGGGTATCCATGATGAATTGAATGGTATTTTGTCTATTAATGTGCAAAATATCTTAGTTGAATATGATGAGTTGTCTAAGGTATTTTTTTTTATCGATGAGGTAAAGTTCTTGGCAAGTGAGTGAGTTTTGTCTCATTCTCTCATGTGAGGCGTTCCCATTCTCTGGCTAGTAGGGCTAGAGGAGCAAAGCTTCCACTGTTCATCTTTCTCCTTACTCTGAATGGTTTTCTTTATTATTATCTTCTGATGTTATCCTGTAGTTATATATTTATGTTTTTTAAAAAAAAAAAAAAAAAACATTGAGATGAACATATTTGAATCTCTTAATCGAAGACATATTTTTAACCGGATAAGTTAAGCTCAGTTTCTCTGTCTTCCATGGGGAGGCAGCTCAATGAGATCAAAATTCAAGACCCTCCTATTTTGACCTAATAACTTCACGGTAGTTTGAGTGATAGTGAGGTTGTTTATTTATGTTTTTATCAGCTAAACATTTATACTTATTTGATTTATCGAATGAAATTAGAGTTCGGATGTGATGAAGTTGCTAGGACAATGCAAACAGAATTCTCCGATGGACCTAGTGACGTACATCCGTGGTTTATTTTCTCAAAAAGAAAAATAAAATCCATCATCCCATTGGCCAGTAGGACACTTTTGATATTCAAAGAGAAAATCTAGCTACAAAGATCATCTTTTTTTTCTTTTCCCTTAAAAAAAAGGGGGAAGTCTAGAGAGAGAATGATGTATTTGGGCGGTTTAATCGTCCTCTCCAACAGAATCTCAAAGGGTTTTATTTAAAATGAATGAGATTATGGAAAAAGAGTACAAATATTTATATTCCTTCTAAATTCCAATAACCATTATTCTACCATTTCCATTCTCTCTCATTCTATTTTCCATCATTAAAAAATAATAATAATAATAGTTTTGATTTTAAGTTATATTTTCGTCTCAAAGTTACTCACCAAAAGAAAAAAAATTAGTTTTCATTAAAATTTTCATCCCAATTAAAATTAGTTACAAATTTTCAAATTACAATTATTTTGAATTAACAACTCCTAAAGTTCAAAGGTAAAAATATAAAATATTAAAACTTCTGCAAATTAAACTGTAACTTAAAAATTAAAAATTGCATTTTTCCTCTTGTTTATTGTTTCCTTTCTCTTCTAGAATTTATGTACAATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATGGTTGCAGCCCCAACTCGCACTCAATTATTATTCTCGTGTGCATATATATATACACACGATCAAACTATAGTGAAGTCAGCCTGATTATTCCACTTCCCTAATACATCAAACTTTCCCATCCTTTCTCTTCTTTTTCTTCGTATAAACCCTAACCCTATTAATATTATATTCTCCACGTAATAAAATCTCTACAAGTACACCCAAGTTTCGATTTTTCTTTTTGGGTTCTTCAGTTTTTTTTTTTTTTTTTTTGGTACTGAATCCAAAAAAGAAAACTCAATTTTTGTATAATGTAGATGGATCACGAAGGCAACGGACTCCGGATCAAGATCAAGGTCAGAAACGGCAGCAACGATGACGGTAAGAAGCAGTTTTGTTCCATTGGCCATATGAGGATTCATTCTGAAACAACAATGGAGAAGGGATTATTATTCCAACCCTCAACTCCGGCCGCCGCCACCCGACGAAGCTCTCCCTCTTCCTCTTTCTCTTCCTCTTCATCCGCCGTCGTTGATTGCTCTATATCTCTTCCCTCATGGTCTCTCACTGGCCGGAGAGGGCGAAAGAGCACCTCCACCACTGCCGCCGCCGCCGCCACCACCACCGTTCTTATCTCTGATGTTCTACCCGGCGCGAAGAGAATGAAGATTGAGACTCATTCGGATAACGAGAAGTTACCGAAAAAGAAAGCGCACTCCGAAGAGAATAAAAATGAGGTTATGGAGAAAGAATACAAATGCAATATATGCAGTAAAGTATTCTCAAGTCCAAGAGCATTTGGAGGCCATAAGTCCAGCCACTACAAAGCCAATAAAACAGATACTGCTACTACAAACAAAACTACTGCCAATACTACCGTTGGAACAACCTTCGAACCGCTGTCGTTAGATTCGTCGACCGATCAAACCGCAGGTCCGAAGAGGGTGATGGATTTTGATCTCAATCAGCTGCCAACCGTCGACAAAGAAGCCATTCTTGAATCTTGCATTTTGCATCTTTGA

mRNA sequence

ATGTTGCTCTCGATGAAGGTTTCTAAAGCTATGGGTATCCATGATGAATTGAATGGTATTTTGTCTATTAATGTGCAAAATATCTTAGTTGAATATGATGAGTTGTCTAAGATGGATCACGAAGGCAACGGACTCCGGATCAAGATCAAGGTCAGAAACGGCAGCAACGATGACGGTAAGAAGCAGTTTTGTTCCATTGGCCATATGAGGATTCATTCTGAAACAACAATGGAGAAGGGATTATTATTCCAACCCTCAACTCCGGCCGCCGCCACCCGACGAAGCTCTCCCTCTTCCTCTTTCTCTTCCTCTTCATCCGCCGTCGTTGATTGCTCTATATCTCTTCCCTCATGGTCTCTCACTGGCCGGAGAGGGCGAAAGAGCACCTCCACCACTGCCGCCGCCGCCGCCACCACCACCGTTCTTATCTCTGATGTTCTACCCGGCGCGAAGAGAATGAAGATTGAGACTCATTCGGATAACGAGAAGTTACCGAAAAAGAAAGCGCACTCCGAAGAGAATAAAAATGAGGTTATGGAGAAAGAATACAAATGCAATATATGCAGTAAAGTATTCTCAAGTCCAAGAGCATTTGGAGGCCATAAGTCCAGCCACTACAAAGCCAATAAAACAGATACTGCTACTACAAACAAAACTACTGCCAATACTACCGTTGGAACAACCTTCGAACCGCTGTCGTTAGATTCGTCGACCGATCAAACCGCAGGTCCGAAGAGGGTGATGGATTTTGATCTCAATCAGCTGCCAACCGTCGACAAAGAAGCCATTCTTGAATCTTGCATTTTGCATCTTTGA

Coding sequence (CDS)

ATGTTGCTCTCGATGAAGGTTTCTAAAGCTATGGGTATCCATGATGAATTGAATGGTATTTTGTCTATTAATGTGCAAAATATCTTAGTTGAATATGATGAGTTGTCTAAGATGGATCACGAAGGCAACGGACTCCGGATCAAGATCAAGGTCAGAAACGGCAGCAACGATGACGGTAAGAAGCAGTTTTGTTCCATTGGCCATATGAGGATTCATTCTGAAACAACAATGGAGAAGGGATTATTATTCCAACCCTCAACTCCGGCCGCCGCCACCCGACGAAGCTCTCCCTCTTCCTCTTTCTCTTCCTCTTCATCCGCCGTCGTTGATTGCTCTATATCTCTTCCCTCATGGTCTCTCACTGGCCGGAGAGGGCGAAAGAGCACCTCCACCACTGCCGCCGCCGCCGCCACCACCACCGTTCTTATCTCTGATGTTCTACCCGGCGCGAAGAGAATGAAGATTGAGACTCATTCGGATAACGAGAAGTTACCGAAAAAGAAAGCGCACTCCGAAGAGAATAAAAATGAGGTTATGGAGAAAGAATACAAATGCAATATATGCAGTAAAGTATTCTCAAGTCCAAGAGCATTTGGAGGCCATAAGTCCAGCCACTACAAAGCCAATAAAACAGATACTGCTACTACAAACAAAACTACTGCCAATACTACCGTTGGAACAACCTTCGAACCGCTGTCGTTAGATTCGTCGACCGATCAAACCGCAGGTCCGAAGAGGGTGATGGATTTTGATCTCAATCAGCTGCCAACCGTCGACAAAGAAGCCATTCTTGAATCTTGCATTTTGCATCTTTGA

Protein sequence

MLLSMKVSKAMGIHDELNGILSINVQNILVEYDELSKMDHEGNGLRIKIKVRNGSNDDGKKQFCSIGHMRIHSETTMEKGLLFQPSTPAAATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISDVLPGAKRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGHKSSHYKANKTDTATTNKTTANTTVGTTFEPLSLDSSTDQTAGPKRVMDFDLNQLPTVDKEAILESCILHL

Homology

[Close]

BLAST of Clc10G04030 vs. NCBI nr
Match: TYK19398.1 (TPRXL protein [Cucumis melo var. makuwa])

HSP 1 Score: 217.2 bits (552), Expect = 1.7e-52
Identity = 141/254 (55.51%), Postives = 167/254 (65.75%), Query Frame = 0


Query: 38  MDHEGNGLRIKIKVRNG----------SNDDGKKQFCSIGHMRIHSETTMEKGLLFQPST 97
           MDH GN LRIKIK+RN           +++D KKQFCSI HM   SET M+KGLLFQ ST
Sbjct: 1   MDHNGNSLRIKIKIRNSDVPAAKVDDCNDNDCKKQFCSIDHMGFDSETPMDKGLLFQAST 60

Query: 98  P--AAATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISD 157
           P   AATR SSPS    S +  +VDCS  L SW LTGRRGRKS S+   ++ TTT  + D
Sbjct: 61  PMIIAATRGSSPS---PSPTCDIVDCSKFLHSWPLTGRRGRKSISSATTSSTTTTDTVVD 120

Query: 158 VLP----GAKRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGH 217
           V+       KR+K ETHSD+EK  + K   E   N V+EK+YKCN+CSKVF+SP+A GGH
Sbjct: 121 VISSDRLNTKRVKTETHSDHEKSVRAK---ENKNNGVLEKKYKCNMCSKVFASPKALGGH 180

Query: 218 KSSHYKANKTDTATTNKTTANTTVGTTFEP----LSLDSSTDQTAGPKRVMDFDLNQLPT 272
           KS HYKANKT  A   K  AN T+GTT EP     ++ SSTD+T     +MDFDLN+LP 
Sbjct: 181 KSGHYKANKTVIA-IKKENANATIGTTIEPKIMVSTVASSTDRTDQKSLMMDFDLNRLP- 240

[Close]

BLAST of Clc10G04030 vs. NCBI nr
Match: KGN55980.1 (hypothetical protein Csa_011357 [Cucumis sativus])

HSP 1 Score: 198.7 bits (504), Expect = 6.2e-47
Identity = 137/252 (54.37%), Postives = 168/252 (66.67%), Query Frame = 0


Query: 38  MDHEGNGLRIKIKVRNGS------NDDGKKQFCSIGHMRIHSETTMEKGLLFQPSTP--A 97
           MDH GN LRIKIK+R+ +      ++D K QF S       +ET MEKGLLFQPSTP  A
Sbjct: 1   MDHNGNSLRIKIKIRSTNAAPKVDDNDCKNQFSS-------TETPMEKGLLFQPSTPVTA 60

Query: 98  AATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISDVLP- 157
           AATRR+SPS  F      VVDCS  L SW LTGRRGRKST +  ++  TT  ++ +V+P 
Sbjct: 61  AATRRTSPSPIF-----GVVDCSKFLHSWLLTGRRGRKSTFSPTSSTTTTDTVV-NVIPS 120

Query: 158 ---GAKRMKIETHSDNEKLPK-KKAHSEENKNE-VMEKEYKCNICSKVFSSPRAFGGHKS 217
                KR+K ETHSD E+     K H +ENKN   +EKEYKCN+C KVF++P+A GGHKS
Sbjct: 121 DRLNKKRVKTETHSDYEESSTIGKVHVKENKNNGALEKEYKCNMCRKVFTNPKALGGHKS 180

Query: 218 SHYKANKTDTATTNKTTANTTVGTTFEP---LSL-DSSTDQTAGPKRVMDFDLNQLPTVD 272
            H KANKTD A   K TA+ T+GT+FEP   +S+ DSSTD T   + V+DFDLN+LP   
Sbjct: 181 GHNKANKTD-AAIKKETASATIGTSFEPKPTMSMADSSTDPTDWKRPVLDFDLNKLP--P 236

[Close]

BLAST of Clc10G04030 vs. NCBI nr
Match: XP_011652725.1 (putative protein TPRXL [Cucumis sativus])

HSP 1 Score: 177.2 bits (448), Expect = 1.9e-40
Identity = 132/250 (52.80%), Postives = 156/250 (62.40%), Query Frame = 0


Query: 46  RIKIKVRNGSN---DDGKKQFCSIG-HMRIHSETTMEKGLLFQPSTPAAATRRSSPSS-- 105
           +IK + RN  +   +D  KQ CSIG HMR   ETTMEKGL  QP T A  T  SS SS  
Sbjct: 120 QIKFRKRNVDSMDKNDDNKQLCSIGDHMRFDCETTMEKGLSIQPPT-ATTTPSSSLSSCP 179

Query: 106 SFSSSSSAVVDCSISLP-SWSLTGRRGRKSTSTTAAAAATTT--VLISDV---------- 165
           S ++S++ VVDC  SLP SWSLTGRRGRK TS++  ++ TTT  V+ SD           
Sbjct: 180 SPAASNNIVVDCLKSLPTSWSLTGRRGRKGTSSSTTSSTTTTDDVIASDQRLHTKSSTST 239

Query: 166 ----------LPGAKRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPR 225
                         KR+KIETHSD+E+L KKK HS E KN  +EKEYKC++CSKVF++ R
Sbjct: 240 STSTATTVDDQHKMKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSR 299

Query: 226 AFGGHKSSHYKANKTDTATTNKTTANTTVGTTFEP----LSLDSSTDQTAGPKRVMDFDL 262
           A GGHKSSHYK  KT+ A   K T      TT EP    +SLDSSTDQT   KRVMDFDL
Sbjct: 300 ALGGHKSSHYKPKKTNDAPIKKET------TTSEPKIITMSLDSSTDQT-NQKRVMDFDL 359

[Close]

BLAST of Clc10G04030 vs. NCBI nr
Match: KGN56002.2 (hypothetical protein Csa_011010 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-23
Identity = 73/116 (62.93%), Postives = 84/116 (72.41%), Query Frame = 0


Query: 151 KRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGHKSSHYKANK 210
           KR+KIETHSD+E+L KKK HS E KN  +EKEYKC++CSKVF++ RA GGHKSSHYK  K
Sbjct: 2   KRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTSRALGGHKSSHYKPKK 61

Query: 211 TDTATTNKTTANTTVGTTFEP----LSLDSSTDQTAGPKRVMDFDLN-QLPTVDKE 262
           T+ A   K T      TT EP    +SLDSSTDQT   KRVMDFDLN QLP  D+E
Sbjct: 62  TNDAPIKKET------TTSEPKIITMSLDSSTDQT-NQKRVMDFDLNMQLPPDDEE 110

[Close]

BLAST of Clc10G04030 vs. NCBI nr
Match: XP_022143488.1 (zinc finger protein ZAT3-like [Momordica charantia])

HSP 1 Score: 80.1 bits (196), Expect = 3.2e-11
Identity = 71/227 (31.28%), Postives = 99/227 (43.61%), Query Frame = 0


Query: 39  DHEGNGLRIKIKVRNGSNDDG------KKQFCSIGHMRIHSETTMEKGLLFQPSTPAAAT 98
           D   NG+ I++K+   S+  G      +      GHMR H + T                
Sbjct: 3   DGGNNGVVIEVKLSINSSKCGLCGKLFRTMKALYGHMRSHPDRTW--------------- 62

Query: 99  RRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISDVLPGAKR 158
           R   P+ S SSSS+A    S  LP+WS+TGRRGRK TS+ AA+ +               
Sbjct: 63  RGMHPTPSSSSSSAA---ASTPLPTWSVTGRRGRKRTSSAAASTS--------------- 122

Query: 159 MKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGHKSSHYKANKTD 218
               ++ +++   KKK H            Y+CN+C K F SP+A GGHKSSHYK  KTD
Sbjct: 123 ---NSNDEHDSSSKKKVH-----------VYRCNVCGKEFWSPQALGGHKSSHYKPEKTD 159

Query: 219 TATTNKTTANTTVGTTFEPLSLDSSTDQTAGPKRVMDFDLNQLPTVD 260
                 ++                        +R +DFDLN+LP +D
Sbjct: 183 FVVQTSSSG-----------------------RRTVDFDLNELPPMD 159

[Close]

BLAST of Clc10G04030 vs. ExPASy TrEMBL
Match: A0A5D3D748 (TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00310 PE=4 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 8.2e-53
Identity = 141/254 (55.51%), Postives = 167/254 (65.75%), Query Frame = 0


Query: 38  MDHEGNGLRIKIKVRNG----------SNDDGKKQFCSIGHMRIHSETTMEKGLLFQPST 97
           MDH GN LRIKIK+RN           +++D KKQFCSI HM   SET M+KGLLFQ ST
Sbjct: 1   MDHNGNSLRIKIKIRNSDVPAAKVDDCNDNDCKKQFCSIDHMGFDSETPMDKGLLFQAST 60

Query: 98  P--AAATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISD 157
           P   AATR SSPS    S +  +VDCS  L SW LTGRRGRKS S+   ++ TTT  + D
Sbjct: 61  PMIIAATRGSSPS---PSPTCDIVDCSKFLHSWPLTGRRGRKSISSATTSSTTTTDTVVD 120

Query: 158 VLP----GAKRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGH 217
           V+       KR+K ETHSD+EK  + K   E   N V+EK+YKCN+CSKVF+SP+A GGH
Sbjct: 121 VISSDRLNTKRVKTETHSDHEKSVRAK---ENKNNGVLEKKYKCNMCSKVFASPKALGGH 180

Query: 218 KSSHYKANKTDTATTNKTTANTTVGTTFEP----LSLDSSTDQTAGPKRVMDFDLNQLPT 272
           KS HYKANKT  A   K  AN T+GTT EP     ++ SSTD+T     +MDFDLN+LP 
Sbjct: 181 KSGHYKANKTVIA-IKKENANATIGTTIEPKIMVSTVASSTDRTDQKSLMMDFDLNRLP- 240

[Close]

BLAST of Clc10G04030 vs. ExPASy TrEMBL
Match: A0A0A0L1Z9 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043960 PE=4 SV=1)

HSP 1 Score: 198.7 bits (504), Expect = 3.0e-47
Identity = 137/252 (54.37%), Postives = 168/252 (66.67%), Query Frame = 0


Query: 38  MDHEGNGLRIKIKVRNGS------NDDGKKQFCSIGHMRIHSETTMEKGLLFQPSTP--A 97
           MDH GN LRIKIK+R+ +      ++D K QF S       +ET MEKGLLFQPSTP  A
Sbjct: 1   MDHNGNSLRIKIKIRSTNAAPKVDDNDCKNQFSS-------TETPMEKGLLFQPSTPVTA 60

Query: 98  AATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISDVLP- 157
           AATRR+SPS  F      VVDCS  L SW LTGRRGRKST +  ++  TT  ++ +V+P 
Sbjct: 61  AATRRTSPSPIF-----GVVDCSKFLHSWLLTGRRGRKSTFSPTSSTTTTDTVV-NVIPS 120

Query: 158 ---GAKRMKIETHSDNEKLPK-KKAHSEENKNE-VMEKEYKCNICSKVFSSPRAFGGHKS 217
                KR+K ETHSD E+     K H +ENKN   +EKEYKCN+C KVF++P+A GGHKS
Sbjct: 121 DRLNKKRVKTETHSDYEESSTIGKVHVKENKNNGALEKEYKCNMCRKVFTNPKALGGHKS 180

Query: 218 SHYKANKTDTATTNKTTANTTVGTTFEP---LSL-DSSTDQTAGPKRVMDFDLNQLPTVD 272
            H KANKTD A   K TA+ T+GT+FEP   +S+ DSSTD T   + V+DFDLN+LP   
Sbjct: 181 GHNKANKTD-AAIKKETASATIGTSFEPKPTMSMADSSTDPTDWKRPVLDFDLNKLP--P 236

[Close]

BLAST of Clc10G04030 vs. ExPASy TrEMBL
Match: A0A0A0L4M3 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043950 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 4.2e-41
Identity = 132/251 (52.59%), Postives = 157/251 (62.55%), Query Frame = 0


Query: 45  LRIKIKVRNGSN---DDGKKQFCSIG-HMRIHSETTMEKGLLFQPSTPAAATRRSSPSS- 104
           ++IK + RN  +   +D  KQ CSIG HMR   ETTMEKGL  QP T A  T  SS SS 
Sbjct: 1   MKIKFRKRNVDSMDKNDDNKQLCSIGDHMRFDCETTMEKGLSIQPPT-ATTTPSSSLSSC 60

Query: 105 -SFSSSSSAVVDCSISLP-SWSLTGRRGRKSTSTTAAAAATTT--VLISDV--------- 164
            S ++S++ VVDC  SLP SWSLTGRRGRK TS++  ++ TTT  V+ SD          
Sbjct: 61  PSPAASNNIVVDCLKSLPTSWSLTGRRGRKGTSSSTTSSTTTTDDVIASDQRLHTKSSTS 120

Query: 165 -----------LPGAKRMKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSP 224
                          KR+KIETHSD+E+L KKK HS E KN  +EKEYKC++CSKVF++ 
Sbjct: 121 TSTSTATTVDDQHKMKRVKIETHSDHERLLKKKVHSNEKKNGALEKEYKCDVCSKVFTTS 180

Query: 225 RAFGGHKSSHYKANKTDTATTNKTTANTTVGTTFEP----LSLDSSTDQTAGPKRVMDFD 262
           RA GGHKSSHYK  KT+ A   K T      TT EP    +SLDSSTDQT   KRVMDFD
Sbjct: 181 RALGGHKSSHYKPKKTNDAPIKKET------TTSEPKIITMSLDSSTDQT-NQKRVMDFD 240

[Close]

BLAST of Clc10G04030 vs. ExPASy TrEMBL
Match: A0A6J1CQU4 (zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-11
Identity = 71/227 (31.28%), Postives = 99/227 (43.61%), Query Frame = 0


Query: 39  DHEGNGLRIKIKVRNGSNDDG------KKQFCSIGHMRIHSETTMEKGLLFQPSTPAAAT 98
           D   NG+ I++K+   S+  G      +      GHMR H + T                
Sbjct: 3   DGGNNGVVIEVKLSINSSKCGLCGKLFRTMKALYGHMRSHPDRTW--------------- 62

Query: 99  RRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGRKSTSTTAAAAATTTVLISDVLPGAKR 158
           R   P+ S SSSS+A    S  LP+WS+TGRRGRK TS+ AA+ +               
Sbjct: 63  RGMHPTPSSSSSSAA---ASTPLPTWSVTGRRGRKRTSSAAASTS--------------- 122

Query: 159 MKIETHSDNEKLPKKKAHSEENKNEVMEKEYKCNICSKVFSSPRAFGGHKSSHYKANKTD 218
               ++ +++   KKK H            Y+CN+C K F SP+A GGHKSSHYK  KTD
Sbjct: 123 ---NSNDEHDSSSKKKVH-----------VYRCNVCGKEFWSPQALGGHKSSHYKPEKTD 159

Query: 219 TATTNKTTANTTVGTTFEPLSLDSSTDQTAGPKRVMDFDLNQLPTVD 260
                 ++                        +R +DFDLN+LP +D
Sbjct: 183 FVVQTSSSG-----------------------RRTVDFDLNELPPMD 159

[Close]

BLAST of Clc10G04030 vs. ExPASy TrEMBL
Match: A0A1S3BLH2 (LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 OS=Cucumis melo OX=3656 GN=LOC103491133 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-07
Identity = 65/196 (33.16%), Postives = 98/196 (50.00%), Query Frame = 0


Query: 67  GHMRIHSETTMEKGLLFQPSTPAAATRRSSPSSSFSSSSSAVVDCSISLPSWSLTGRRGR 126
           GHMR H + +  KG+  QP    A       SSS SSSSS        LPSWSLT +RG 
Sbjct: 33  GHMRSHPDRSW-KGI--QPPISIA-------SSSSSSSSS-------PLPSWSLTAKRGC 92

Query: 127 KSTSTTAAAAATTTVLISDVLPGAKRMKIETHSDNEKLPKKKAHSEENKNEV-MEKEYKC 186
           K  S   AA ++++   S     AK   + ++ D  +  ++K    +  NE+ ++K YKC
Sbjct: 93  KGISCVTAAPSSSSSRSSSSETEAKLESLYSNPDVVE-DQRKVKKMKKINEIELKKVYKC 152

Query: 187 NICSKVFSSPRAFGGHKSSHYKANKTDTATTNKTTANTTVGTTFEPLSLDSSTDQTAGPK 246
           N C K + S +A GGHKS H K+      ++N TT                   +T   +
Sbjct: 153 NSCEKEYLSHQALGGHKSRHRKSKILLRTSSNLTT-------------------RTHQER 191

Query: 247 RVMDFDLNQLPTVDKE 262
           ++++FDLN+LPT++ +
Sbjct: 213 KILNFDLNELPTMEHD 191

[Close]

BLAST of Clc10G04030 vs. TAIR 10
Match: AT5G56200.1 (C2H2 type zinc finger transcription factor family )

HSP 1 Score: 50.8 bits (120), Expect = 2.0e-06
Identity = 31/81 (38.27%), Postives = 45/81 (55.56%), Query Frame = 0


Query: 182 EYKCNICSKVFSSPRAFGGHKSSHYKANKTDTATTNKTTANTTVGTTFEPLSLDSSTDQT 241
           ++ CNIC K FS+ +A GGHK  H+ A  +  A T   TA  TV  T     +  +  + 
Sbjct: 410 DHVCNICHKSFSTGQALGGHKRCHWTAPVSTVAPTTVPTAAPTVPATASSSQVTETVQEV 469

Query: 242 AGPK-RVMDFDLNQLPTVDKE 262
              K RV++FDLN+LP  ++E
Sbjct: 470 KKLKRRVLEFDLNELPPNEEE 490

[Close]

BLAST of Clc10G04030 vs. TAIR 10
Match: AT3G49930.1 (C2H2 and C2HC zinc fingers superfamily protein )

HSP 1 Score: 43.5 bits (101), Expect = 3.1e-04
Identity = 20/43 (46.51%), Postives = 27/43 (62.79%), Query Frame = 0


Query: 180 EKEYKCNICSKVFSSPRAFGGHKSSHYKANKTDTATTNKTTAN 223
           +K+YKC++C K F S +A GGHK+SH K    D   +N T  N
Sbjct: 91  QKDYKCSVCGKSFPSYQALGGHKTSHRKPVSVDVNNSNGTVTN 133

The following BLAST results are available for this feature:

BLAST of Clc10G04030 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK19398.1	1.7e-52	55.51	TPRXL protein [Cucumis melo var. makuwa]	[more]
KGN55980.1	6.2e-47	54.37	hypothetical protein Csa_011357 [Cucumis sativus]	[more]
XP_011652725.1	1.9e-40	52.80	putative protein TPRXL [Cucumis sativus]	[more]
KGN56002.2	1.7e-23	62.93	hypothetical protein Csa_011010 [Cucumis sativus]	[more]
XP_022143488.1	3.2e-11	31.28	zinc finger protein ZAT3-like [Momordica charantia]	[more]

BLAST of Clc10G04030 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of Clc10G04030 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D748	8.2e-53	55.51	TPRXL protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold443G00310 ...	[more]
A0A0A0L1Z9	3.0e-47	54.37	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043960 P...	[more]
A0A0A0L4M3	4.2e-41	52.59	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G043950 P...	[more]
A0A6J1CQU4	1.6e-11	31.28	zinc finger protein ZAT3-like OS=Momordica charantia OX=3673 GN=LOC111013364 PE=...	[more]
A0A1S3BLH2	8.9e-07	33.16	LOW QUALITY PROTEIN: uncharacterized protein LOC103491133 OS=Cucumis melo OX=365...	[more]

BLAST of Clc10G04030 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G56200.1	2.0e-06	38.27	C2H2 type zinc finger transcription factor family	[more]
AT3G49930.1	3.1e-04	46.51	C2H2 and C2HC zinc fingers superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	3.30.160.60	Classic Zinc Finger	coord: 156..235 e-value: 4.7E-5 score: 25.1
None	No IPR available	PFAM	PF13912	zf-C2H2_6	coord: 183..207 e-value: 7.9E-7 score: 28.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..105
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 86..105
None	No IPR available	PANTHER	PTHR45988:SF18	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY	coord: 67..257
IPR044653	C2H2-type zinc-finger protein AZF1/2/3-like	PANTHER	PTHR45988	C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED	coord: 67..257
IPR013087	Zinc finger C2H2-type	PROSITE	PS00028	ZINC_FINGER_C2H2_1	coord: 185..205
IPR013087	Zinc finger C2H2-type	PROSITE	PS50157	ZINC_FINGER_C2H2_2	coord: 183..210 score: 9.618734
IPR036236	Zinc finger C2H2 superfamily	SUPERFAMILY	57667	beta-beta-alpha zinc fingers	coord: 180..208

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G04030.1	Clc10G04030.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity
molecular_function	GO:0008236	serine-type peptidase activity