Clc10G03770 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G03770
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	replication factor C subunit 2
Location	ClcChr10: 4046026 .. 4054726 (-)
RNA-Seq Expression	Clc10G03770
Synteny	Clc10G03770

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAAAAAAGAAAAAAAGAAAAGAAAATTCTATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGTACTTCTCCTTCTCTAATCCCTTCCGAAAATGCATCCATTGATGACATAGTTTAGTTATGTTTCATGGGTTTAACTTAATTTCTAGTCTAACTGTTAACTTGTTTACGATGTGGTACTGAAAATGGACTTTATATTTAGTTATGGGAAGTAGAAAATCATGCAGCTTGAACGTCTTTTCTTTCTCTTCTTTGAGCTTTTTAGTGGCCTTTGGGGAATTTGGGAACTAGTAAGGGGTTCGAATTTATCCTTTTCGTTTTTTTTTGGGGGGGGGGGGGGGGGGTTATGTTCTGCAAACACATATACAAATTTGTTCTACCAAAATGGGTTGGGGAAAGTGAAAAGTAAAAGGTTCTGTAAGTGCTCATTTACTTTGTTAATGAGTATTTTAATGTACTGCAACTTGAATGTTGTTGCTATGATGAGGTTTTTGATGAACAAATGTTGTAAGTTTTTCCTTCTGTCTTGCTATCAGTTCTAATCTACGTTGTTGCTATATATTTGTTTTCTAGGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGTGAGATTTCTGTGCTTTCTGAACTTCAAATATTTCAAATGTTGTTGGATCTGTATGTTTTTCTAATCTGCGTTCTTGTGTAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGGTAGATTTCAATGGATATAATGCTAGGGAAGCACAGGCGCTCTCTTCTTGATAGAATGTCCATGTCAGACACGTGTCTGGCACACAAAAAAAGTGTCCTATTTTATACTTTTTTTCTTTTCAATTTCGATCACTCATGGGACACATAAACCTAAAAAATTGATTGAGAATTTGAAAATAAGAAACAGTTAATCCAGCTCATTACTCCATGTCCATTGCTTACCTTATTATGATCAGCCTAAAATTTAACTCAACCTTAAAAATCCGTCCAAAAGACAAGAAGAAATTGAGTGTGTGTGTGTGTTGGGGGGGGGGGGGGGGGTTACTCACTGTTTCAAGCACATGCAATGTTGAATTCATGTATCTTATCTATTTTGAAGTATCAATATGTTAGTATATACACATCTTCTATAAAGTAATGATATTCTCATTGTGTCCATGTCCTACATTTCTATAAATTGACGTGTCATCTCTGTATCATATTTGTGTCTTGTGTCAGTGTTTGTGCTTATGACACATCTCATATTCATAGGGCTATATGAATTGATGCAACAATATCTAGAAATATCTCATGGTTATAAGCTATATGATGCAATCATCATATAGCTTATGATAATGAAAGCGTAGTTTCATACAAAAAGGAAAAAAAGAAAAAAGAAGAAAACAACTTATATGATGCATTAACCCATAATATCTAAAAGTATGAAATATCTCATAGTCATAGGCTATATGATGCAACAATATGAAATTTCATTTTGATGTGCTAGTTCCACTGTCGTGACACTATATGGTTCTAAATGGAACTTGAAGTTCTTTCTTAGGAGTTTTCATTGTTTCCTTCCCATTATTTTCACAATCCTATCCCTCACCTCAAATTTTTTGTTTTCTTTTGCTTTGCTCTTCAGTTTCTTACTTTAGGTTCCATTGTTTATTTATTACTTTTGGTGATGGTTATGATTGTGAAAATAATCCAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAGTTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTATCATTTATTTTTTATAATGCTTTGAGCTGCATTCCAGACTACATTTCTGTTGTTACAAATAAAATCACTCTGCTAATTTTAATTGTTATTGAAAACTTCATACTACTTAATTATCTTCTGAAGAAAGTGTTACTTTATTGAAAGGCTGAAAGCAGCAGTACGTTAGATTTCACATGTCATTGATTTATTATGTGTTGGTCTCATTGTTCTTTTGTGGAATTTATGGGAATGGCTAGCTTGTTGAGTAATCACTGTCATATTCTTAAGCTTTATTGTTCAAAAGGATAAAAAGTCTTGTTCCTCTCAAAACATCTTTTGTGAGGACAGAATTTCTCATAGATATGTTTCTTAGAATTGCACCTAAACAAAAGTATTATGTTAATATCACTGATTGGTCAGGTAAGGATCTTGAGGAAGGGAAGGCCCGCAAAGTGCCACTAAAAGAAAACTATTTTTTGGTCTTATTGGGCGTCCTTTTTTTTAACTCTTTGGTCTTCTGGGGATTTCTCATCTCCCCTCTTTTGTTTCTATTATCACCAATTATATGGTCTCTTAGGGTTTTTTTTTTAAATTTTTTTTTGGAACACGAGACCAAAATGTTCATTGATGAAATGAAAAGAGAGACTAATGCTCAATAGATGCAAAACTTTACAGATGAGAGAATAAAGTAAATAAAAAAGTAAATAAGGGACAATTCAACAATCAACACTTAATTAGAATTACTCCAGAAACAGAAAATACATAGATATAAAGAGAAGGAGAACAAAAGTTGAACTAATAAGGAAAAAGGAAGGCTGGCCAATTGAGACTGATGTCCTGAGAAGAGTATCCAACAAAGGTTATAGTAAGAGAGCACCATAGAGAGGCATTGAGACAAGCTAAGACACAAATATCTGAACCAGAATACACTTTTCTTAAAAAATTCCTAGGTTCCTTTCCATCCATAGATCTGATAGAAAAAGCTTTTACGACATTAATCCAAATAAGGTGTGGACTCACTGAAAGAGGACCCTCAAGTAGCTGAAGCACATTGTTTTTGACACTTGAGTGAAAAAAAAACCCCATGAAAATCTGAAGCAATGTAGAAGCTTGCTCCAATAATTGTAAGAGAAAGGACAGGTAAAAAACTTATGGTAGTAGCTCTCCACACTCAAATGACATAGGAAACAAAATGGGGGTTGAAGGCACGAAGCAGCTAATTTCTTCTGAAGAATTCGGCTGTGTTGAGGCTACTATTCAAAAGAATCCAGGATAAAATGGAAACCCTCAAAGGACTACCAGATTGCCATAATGCCATGTAAATCCCTTTTGACAAAGAGAAAAGGATCTTAATTTGCAAGAGAGGGATTTAACTATGAATGAACATGATGCTTTCAAACTCTAAAATCTGGAATCAGCCCCAACACTAACCGTAACCATGGCGAGAGCTTCCATGAGAGCAGCAAAATTTGAAATTTCATCATCTTTTAAAAGTTTCTTTGGAGACTATTTGCCAAGGTGAACAAGTAGCATCCAAAAAATCATTGACAGCCCCATACGGCAAAGGGGAGAGTTGGAAAAGTCGAGGAAATTTATCTTTTAAAACCTTTGAACAAACCCAAAAATGATGCCAAAATAGGATTCTTGAACCAGATCTTAAGGAGAATGGAGCAAACGAATCCACATATTTTCAAGTTCGAGATATATTGATCCCTGGCTTTGAAGATTGGAATGATGTTTTCCAAGTGTATGCCAATCAAATGTATCAGTGCCGTGAATGCTAGAAACCACCAATTCCAATTAGAGAGAGGTTCCATAAAATAACACCAACCCCATTTTGCAACCAAAGCCGAGTTTTGAATGGATAAACCACCAATACCCAAACCTCCATCCAGCTGTGAATTTATAACTGTATTCCAGCCCACAAAATGAGAAATCTTACCTCCATTGTTTCCTTCCCAAAAGAAGTTATGTTAGATACATTCTAATTCCATTCTAATTCCATTCCAACACGTAAAGGCAGTTGAAAGATAGACATGTAATTAGTGGGGAGATGAACCATCATGGGCTAGCCTAGTGGTAAATATGGGGGCATAACCTTGAAAAAGGGCTAAGAGGTCATGGGTTCAATCCACGGTGGCCACCTATCTAGGATTTAATATTCTACAAATTTCCTTGACACCTAAATATTGTAGGGTCCGGCGGGTTGTCTTGTGAGTTTGGTCGAGGTGCGCGTAAGCTAGCCTAGACACTCACAGATATCAAAAAAAAAAAAAAAAAGTGGGGAGATGAGACAACACTGATTTGCAACGTCTGAGCTGCACACCCCTTGAAAGATGGAATCTCTTCTAACAGTTAAGCTTTTTGTAAACTTTATCCAGAATGGGCTGCCAAAAAGATGCATTCTTCGGGTGACCACCCAAGGGTAATCCGAGATAAATAAAAGGTGGAACCTCCAGCTTGCAGTTAAACTTTGATGCCATGGCCAAAAGTTTGGAGTCGTCATCATTAATACCACAACGGGTGGATTTCTGCCTATTAACTTTTAGTCCTGAAATTCTTTCAAAAACTTTCACTGTCTTCATGAGAATTCCAATATTGAATCATCATATATATATATATATATGATGAAAACCACAGCTTTCACTGTCTTCATGCGTGTGTATTCTTTACAAAAATGGTAAAGTTTCATGATCGCGTTGAAGTATTGACACATGTACCTTGGTTGTCCCAACTGTGAATCCTTCAAACAATCCTTTAGAATGAATGTTTGCCACTAAAACAGTAAAAACTTCACTGACCAAGAGAAAAAGAAAGAGTCACCTTGACGGATACCTCTTGGTCGCCCATATATGAAAGATAGAGAATTTAGGATTGTGAATGGATCCATTTATCCATTTGATCCAAAGAGGATCAAACCGCTTTGCCTTCAAAATTTATCCCAAAAGATCCCGATCCACCGAATCATAGGCTTTCTTGATGTCTAGTTTGAGGATCTAGCCTTGTCTTCTTTTAAATTTATAGTCTTCCACAATTTCATTTGTAATCAAAACGGGATACAGAATGCGTCTTCCTTCAATAAATGCACTTTGTGAAAAGAAAACTATTCTTTGGTCCATTTGGATTGAAAAGAAAAATATGTTATTCAAAGATAGTGTAAAAGTACTCATACAATTAAAGTTACTAGCTTTTTGGTTGATTGGAAATTTAACATAGTATTGGTCTTGCATTTGAACCCCGTAATGTTATTTCCTTCCTAATTATTATTGATTTTCAAGGGTTTTTACAAATTTTCAAGTCCACGAGTGAGGGATGTGTTGAAGTTGAAGTATTGATATAATTAAATTTACCATAACCCCTTAGCTTAAGCTTTTGGGTTGTTTGGGTCACTAATGTAAATCTAAATGCCTTGTCATTTGGCCTTCCTTTCAATACTCACTTTTTGCTAGGAACACTTCTTGTGTCATATCTATATGTATATGTTTGTATATGTATGTATATGAAAACAGACTAATGCTAAGGATACAATAAGTTTCAATAGGATAGAGAAATTGCGACAAGACAAAAGGAGAAGAAATACTATTGAGATACAAAGATGAGAAGACATATAAAAGCAAATACTTAAAACCTAACGAACCAGCTCCAAAATGGAAACCAAAACTAGAGAACACATAAACTATATGTATGTATGTATATGGATAGTATATGTATATGTATGTATATATGTAACATCAATTTCTTTTCAACATTTAGGAATTGATGCATATGCATACTTTCCTAGCATTTCTTTTTTATCTAACACTGAAGGTATGATTTTTTTTTTTTTAAATTAATTTTTTTTTTTAATTTTTAAATACTAGTGTTGGAGATCATGGCATCTATCGAATGCTAAGTCTATCAACACCTTTGGAAGCTGGATCTAATGCTCAAGCATCTATTGGTATGCCCTTGAAAATGAAGTGCACATTAGGGATCTTTTTTAGTTGGAAACAAACTAGACTAGCATGTAAACAATGTTTTATATTTGAAAAGTATGAAAGGCTTGTGATGGAAGCGATAGTCTTTCACAACATTGTTAAAGAGTGCTAAATTATGAAAGGCTAACTTGGAAAATTGGGATTCTTAAGAGTGCTTAATGCTCACATTTTATAATAAGTCTTTATTCTCTTCATTTGAAAAACCATAAACATTTAGATCATTTTACCAGATGAATACATGAACAATCTATGGGTAGAAAGGTTATAACTGTGTACTAAAATCATCAGGGAGTTAAGCTCGTTGATCTCCTTTAGCAATGATTGAGGCACTTGTCTAATTTTTTCTTGTTACTTTATGACTGAATTAATTTCTCTCAATTGAATTTCTTCCTTCAAAATTTTAGTCTCTACAATGTCACATGCCTGATCATTGTCCCCTCCTAGTGGAGACCAGTTTCTGCCTGTTGAGTTATTGTCCATTTTAATTAACAATAATTTGAGAAAGAAGTGGCTCAACTACTTGAAACTTTAATGGGAAGTTGTTGGGGAAATGTGGAAGTCTATGCAGGTTTTGGTTGAATTTCTCTAGAAAGCGCAAGTTTTATTAATGAAAAAAATCTTATTTCGTGGAACAAAGAGGTAAATGGCATAATAGTCCTCTTTCATGTATGCATCATACAACTTTTCTTATCCCATGGATATAGTAATCTAAATAATCTTCAGCGGTTTTTAATAACGAAAAGCAAAAAGTTCGCTCTTTGGAGGGAAGAGTTGGCTCTTGCCAATCTTTTATGGAATGCGAGGGGCTTCAAGTCTCTGGCCAGAAGAATCAATGCTAAAGTTACTTTACTCATATTTCCGACTTTGTCATTCTCATTTCTCACTAAAAAGACAAAGCCCATTAGTACGAGGGTTATCAACCCCATTTGGGGTTCTAGAGGTGTTGAATGGACTTCTTAAGATGACGTAGGTTCCTTTTGGTAGCATTGAATTCTTTTTTCTTTGGCAGTACTTACCTAAATAGATAAAAGGTATGCTCTTTCTCTATTTTAGTGGTTATCTTAGGCGAATGAAGTTTGTTGGTGCCTTGGTGGGTCTTAGGCATCTGTCTTAGGCTAGCTAACAAAGAGGAGACACATTTTGAAGGGAATTATATGACTTTCAACTTATATCACTTGATGAAAGCCGGTTTCTTTTACAACAAAACTAATGTGTCTTTTAGCAGTTCATTGAGTTGATTAAAGCATGATCTTGGGTGAATAGATCTCTGACTGTATTTTTACTACTCGGGTTGATAAGTTCTCCCTTTCTTTTTTCCAAATACAAAAGGAACGTGCTCAGGTAGTTTAGAAATGATTATTGTTGAAAATATGAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTCCTATCATGCGTTTTTATCTTTCCTTGTCTTTTATAAACTCAGAAAATTTCATCTTGACATGCTTGTTGATCCCCCAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGTATGTTAAAACCTGATTCATCATTTGATCATACCAGATCAAGCAAGTACTCACTCTTTTGATGCATTGCAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGAGTAGTCAACATGTAGAGGCTGCTCAAAATTTGGCTCAAAGGGGAGGTAGTATGAATGTAAACATCTATGTTCCTTAGGATATTAGCTTTATATTTTCGTAAGATGTAGTCAGATTGAGCACAAAATTGGGTATGTTACTATCATCTTGCTAATGTTTTAGGCCAATAGCAGTCTTATCAAGGTGTCTCTCCCCCGCCCCACAGGAGCCAGATACAACCCTTGACATGTCCATGATTCACAATTGTTAAAAGCTTTTGGTTTCAAATGTCTAGATCTAATGACACAACCTCGAGTATTTGTCGATATCTCAGTACATTGACACAAAGAGCACGAGCGCAAATACAGACCTAGTGATATGTATTTTGATGTCTTGTTAATTCCGCATCAGTTTCATACAAAAGCATATCTAAAGTCAATAATAGTCTGGATTAGTTACAATTTGCTTACTCACTGCATTGAATACATCTCTCACAAGTGCTGGATTCGTATTCAATTTGTATGCAAGTGTGCGATATATGTTGGACATGGACACGTTATTGAAACTGAAGTGTCCATAACTTTGAAGGGTCTTTTTTGAGTATTCTGCTGAACTTTATGGTTACAACTGGGGGGAAATG

mRNA sequence

AAAAAAAAAAAGAAAAAAAGAAAAGAAAATTCTATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAGTTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGAGTAGTCAACATGTAGAGGCTGCTCAAAATTTGGCTCAAAGGGGAGGCCAATAGCAGTCTTATCAAGGTGTCTCTCCCCCGCCCCACAGGAGCCAGATACAACCCTTGACATGTCCATGATTCACAATTGTTAAAAGCTTTTGGTTTCAAATGTCTAGATCTAATGACACAACCTCGAGTATTTGTCGATATCTCAGTACATTGACACAAAGAGCACGAGCGCAAATACAGACCTAGTGATATGTATTTTGATGTCTTGTTAATTCCGCATCAGTTTCATACAAAAGCATATCTAAAGTCAATAATAGTCTGGATTAGTTACAATTTGCTTACTCACTGCATTGAATACATCTCTCACAAGTGCTGGATTCGTATTCAATTTGTATGCAAGTGTGCGATATATGTTGGACATGGACACGTTATTGAAACTGAAGTGTCCATAACTTTGAAGGGTCTTTTTTGAGTATTCTGCTGAACTTTATGGTTACAACTGGGGGGAAATG

Coding sequence (CDS)

ATGGCGTCTTCTTCGGGCAGCAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTACAGGCCCAGCAGGGTCGTTGATATTGTGGGCAATGAAGATGCAGTTCGTCGCCTCCAAGTCATTGCTCGCGACGGCAACATGCCCAATCTCATATTATCTGGTCCTCCAGGAACGGGGAAGACAACCAGTATTTTAGCTCTTGCTCATGAGCTCTTGGGACCAAATTACAAGGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACCTTGCCTCCTGGTCGACACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCTTTGAGGCGTACAATGGAAATATATTCAAACACAACACGTTTTGCCCTTGCATGTAATACCTCCTCAAAAGTTATTGAGCCTATTCAGAGTAGATGTGCAATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTTGCGCGCCTTATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTTGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCACTGAATAATTTGCAAGCTACATTTAGTGGATTCCGCTTTGTAAACCAGGACAATGTTTTCAAGGTTTGTGATCAACCGCATCCCCTGCATGTGAAGAATGTGGTGCGAAATGTGCTTGAAGGTAAATTTGACGACGCTTGTGCAGGTCTGAAGCAACTCTATGACTTAGGCTATTCGCCCACTGACATAATAACCACTCTTTTCCGTATCATTAAGAACTACGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATTTGTGATGGAGTTGGTTCTTACCTTCAGCTGTGCGGTCTTTTGGCCAAACTTTCCATTGTTCGTGAGACTGCAAAAGCGCCATGA

Protein sequence

MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP

Homology

[Close]

BLAST of Clc10G03770 vs. NCBI nr
Match: XP_038905731.1 (replication factor C subunit 2 [Benincasa hispida])

HSP 1 Score: 649.0 bits (1673), Expect = 2.1e-182
Identity = 324/331 (97.89%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSSSYDMPWVEKYRPS VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSSYDMPWVEKYRPSTVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHK+VILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKMVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Clc10G03770 vs. NCBI nr
Match: XP_008448956.1 (PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo])

HSP 1 Score: 645.2 bits (1663), Expect = 3.1e-181
Identity = 320/331 (96.68%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Clc10G03770 vs. NCBI nr
Match: XP_022152824.1 (replication factor C subunit 2 [Momordica charantia])

HSP 1 Score: 642.9 bits (1657), Expect = 1.5e-180
Identity = 319/330 (96.67%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SSSYDMPWVEK+RP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Clc10G03770 vs. NCBI nr
Match: XP_004147970.1 (replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protein Csa_010919 [Cucumis sativus])

HSP 1 Score: 641.0 bits (1652), Expect = 5.8e-180
Identity = 318/331 (96.07%), Postives = 326/331 (98.49%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Clc10G03770 vs. NCBI nr
Match: KAG6577570.1 (Replication factor C subunit 2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 636.3 bits (1640), Expect = 1.4e-178
Identity = 318/332 (95.78%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MASSSG-SSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGK 60
           MASSSG SSSSYDMPWVEKYRPS+V DIVGNE+AV RLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot
Match: Q9CAM7 (Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1)

HSP 1 Score: 606.3 bits (1562), Expect = 2.1e-172
Identity = 303/333 (90.99%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MASSSGSSS--SYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRPS+VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILAR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+K+IEPIQSRCA+VRFSRL+DQ+IL R
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot
Match: Q7XRX1 (Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 PE=2 SV=2)

HSP 1 Score: 582.0 bits (1499), Expect = 4.2e-165
Identity = 286/332 (86.14%), Postives = 313/332 (94.28%), Query Frame = 0


Query: 2   ASSSGS---SSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 61
           ASSS +   + +YD+PWVEKYRP+RV D+ GN DAV RLQ IARDGNMPNLILSGPPGTG
Sbjct: 3   ASSSSAPDLADAYDIPWVEKYRPTRVADVGGNSDAVARLQDIARDGNMPNLILSGPPGTG 62

Query: 62  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 121
           KTTSIL+LAHELLGP+Y+E VLELNASDDRG+DVVRNKIKMFAQKKVTL PGRHK+VILD
Sbjct: 63  KTTSILSLAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKIVILD 122

Query: 122 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILAR 181
           EADSMT+GAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRL+DQEIL R
Sbjct: 123 EADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGR 182

Query: 182 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 241
           LM+V+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQ+NVFKVCDQPHPL
Sbjct: 183 LMIVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQPHPL 242

Query: 242 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 301
           HVKN+V+NVL+GKFD+AC+ LKQLYDLGYSPTDIITTLFR+IKNYDMAEYLKLE +KETG
Sbjct: 243 HVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLKETG 302

Query: 302 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKA 331
           FAHMRICDGVGS+LQL GLLAK ++VRETAKA
Sbjct: 303 FAHMRICDGVGSFLQLSGLLAKFALVRETAKA 334

[Close]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot
Match: P35250 (Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3)

HSP 1 Score: 452.6 bits (1163), Expect = 3.8e-126
Identity = 215/320 (67.19%), Postives = 266/320 (83.12%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 25  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 84

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ +LELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 85  SILCLARALLGPALKDAMLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 144

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S K+IEPIQSRCA++R+++LTD +IL RLM 
Sbjct: 145 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMN 204

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           V++ E+VPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF F+N +NVFKVCD+PHPL VK
Sbjct: 205 VIEKERVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGFINSENVFKVCDEPHPLLVK 264

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 265 EMIQHCVNANIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 324

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 325 MKIAEGVNSLLQMAGLLARL 344

[Close]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot
Match: Q05B83 (Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1)

HSP 1 Score: 451.4 bits (1160), Expect = 8.6e-126
Identity = 215/320 (67.19%), Postives = 266/320 (83.12%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           + + GS+  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTT
Sbjct: 23  SKAPGSAGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTT 82

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SIL LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEAD
Sbjct: 83  SILCLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEAD 142

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMT GAQQALRRTMEIYS TTRFALACN S K+IEPIQSRCA++R+++LTD +ILARL+ 
Sbjct: 143 SMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLS 202

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           V++ EKV Y  +GLEAIIFTA GDMRQALNNLQ+T+SGF F+N +NVFKVCD+PHPL VK
Sbjct: 203 VIEKEKVQYTDDGLEAIIFTAQGDMRQALNNLQSTYSGFGFINSENVFKVCDEPHPLLVK 262

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
            ++++ +    D+A   L  L+ LGYSP DII  +FR+ K + MAEYLKLEF+KE G+ H
Sbjct: 263 EMIQHCVSADIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTH 322

Query: 302 MRICDGVGSYLQLCGLLAKL 322
           M+I +GV S LQ+ GLLA+L
Sbjct: 323 MKIAEGVNSLLQMAGLLARL 342

[Close]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot
Match: Q641W4 (Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 1.1e-125
Identity = 212/317 (66.88%), Postives = 266/317 (83.91%), Query Frame = 0


Query: 5   SGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSIL 64
           S ++  Y++PWVEKYRP ++ +IVGNED V RL+V AR+GN+PN+I++GPPGTGKTTSIL
Sbjct: 23  SKTTGHYELPWVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSIL 82

Query: 65  ALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMT 124
            LA  LLGP  K+ VLELNAS+DRGIDVVRNKIKMFAQ+KVTLP GRHK++ILDEADSMT
Sbjct: 83  CLARALLGPALKDAVLELNASNDRGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMT 142

Query: 125 TGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQ 184
            GAQQALRRTMEIYS TTRFALACN S K+IEPIQSRCA++R+++LTD ++L+RLM V++
Sbjct: 143 DGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIE 202

Query: 185 AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVV 244
            EKVPY  +GLEAIIFTA GDMRQALNNLQ+TFSGF ++N +NVFKVCD+PHPL VK ++
Sbjct: 203 KEKVPYTDDGLEAIIFTAQGDMRQALNNLQSTFSGFGYINSENVFKVCDEPHPLLVKEMI 262

Query: 245 RNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRI 304
           ++ ++   D+A   L  L+ LGYSP D+I  +FR+ K + MAEYLKLEF+KE G+ HM++
Sbjct: 263 QHCVDANIDEAYKILAHLWHLGYSPEDVIGNIFRVCKTFPMAEYLKLEFIKEIGYTHMKV 322

Query: 305 CDGVGSYLQLCGLLAKL 322
            +GV S LQ+ GLLA+L
Sbjct: 323 AEGVNSLLQMAGLLARL 339

[Close]

BLAST of Clc10G03770 vs. ExPASy TrEMBL
Match: A0A1S3BLV0 (replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490969 PE=3 SV=1)

HSP 1 Score: 645.2 bits (1663), Expect = 1.5e-181
Identity = 320/331 (96.68%), Postives = 328/331 (99.09%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Clc10G03770 vs. ExPASy TrEMBL
Match: A0A6J1DH57 (replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE=3 SV=1)

HSP 1 Score: 642.9 bits (1657), Expect = 7.4e-181
Identity = 319/330 (96.67%), Postives = 327/330 (99.09%), Query Frame = 0


Query: 2   ASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTT 61
           +SSSG+SSSYDMPWVEK+RP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKTT
Sbjct: 3   SSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTT 62

Query: 62  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 121
           SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD
Sbjct: 63  SILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEAD 122

Query: 122 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMV 181
           SMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLMV
Sbjct: 123 SMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMV 182

Query: 182 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVK 241
           VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLHVK
Sbjct: 183 VLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVK 242

Query: 242 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 301
           NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH
Sbjct: 243 NVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAH 302

Query: 302 MRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           MRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 303 MRICDGVGSYLQLCGLLAKLSMVRETAKAP 332

[Close]

BLAST of Clc10G03770 vs. ExPASy TrEMBL
Match: A0A0A0L763 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV=1)

HSP 1 Score: 641.0 bits (1652), Expect = 2.8e-180
Identity = 318/331 (96.07%), Postives = 326/331 (98.49%), Query Frame = 0


Query: 1   MASSSGSSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKT 60
           MASSSGSSS+YD+PWVEKYRP++V DIVGNEDAV RLQVIARDGNMPNLILSGPPGTGKT
Sbjct: 1   MASSSGSSSNYDIPWVEKYRPNKVTDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKT 60

Query: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120
           TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA
Sbjct: 61  TSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEA 120

Query: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLM 180
           DSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RLM
Sbjct: 121 DSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLM 180

Query: 181 VVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHV 240
           VV+QAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT SGFRFVNQDNVFKVCDQPHPLHV
Sbjct: 181 VVIQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFRFVNQDNVFKVCDQPHPLHV 240

Query: 241 KNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300
           KNVVRNVLEGKFDDAC GL+QLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA
Sbjct: 241 KNVVRNVLEGKFDDACTGLRQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFA 300

Query: 301 HMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           HMRICDGVGSYLQLCGLLAKLS+VRETAKAP
Sbjct: 301 HMRICDGVGSYLQLCGLLAKLSMVRETAKAP 331

[Close]

BLAST of Clc10G03770 vs. ExPASy TrEMBL
Match: A0A6J1E9R2 (replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=3 SV=1)

HSP 1 Score: 634.4 bits (1635), Expect = 2.6e-178
Identity = 317/332 (95.48%), Postives = 326/332 (98.19%), Query Frame = 0


Query: 1   MASSSG-SSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGK 60
           MASSSG SSSSYDMPWVEKYRPS+V DIVGNE+AV RLQVIARDGNMPN ILSGPPGTGK
Sbjct: 1   MASSSGSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTGK 60

Query: 61  TTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120
           TTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE
Sbjct: 61  TTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILDE 120

Query: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARL 180
           ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL RL
Sbjct: 121 ADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRL 180

Query: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLH 240
           MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPLH
Sbjct: 181 MVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLH 240

Query: 241 VKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300
           VKN+VRNVLEGKFDDACA LKQL+D+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF
Sbjct: 241 VKNMVRNVLEGKFDDACAALKQLHDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGF 300

Query: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 AHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332

[Close]

BLAST of Clc10G03770 vs. ExPASy TrEMBL
Match: A0A6J1HQ24 (replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 SV=1)

HSP 1 Score: 633.6 bits (1633), Expect = 4.5e-178
Identity = 317/333 (95.20%), Postives = 325/333 (97.60%), Query Frame = 0


Query: 1   MASSSG--SSSSYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 60
           MASSSG  SSSSYDMPWVEKYRPS+V DIVGNE+AV RLQVIARDGNMPN ILSGPPGTG
Sbjct: 1   MASSSGSSSSSSYDMPWVEKYRPSKVADIVGNEEAVSRLQVIARDGNMPNFILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLGPNYK+GVLELNASD+RGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGPNYKDGVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILAR 180
           EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSK+IEPIQSRCAIVRFSRLTDQEIL R
Sbjct: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQAT+SGFRFVNQDNVFKVCDQPHPL
Sbjct: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLEGKFDDACA LKQLYD+GYSPTDIITTLFRIIKNYDMAEYLKLEFMKE G
Sbjct: 241 HVKNMVRNVLEGKFDDACAALKQLYDMGYSPTDIITTLFRIIKNYDMAEYLKLEFMKEIG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Clc10G03770 vs. TAIR 10
Match: AT1G63160.1 (replication factor C 2 )

HSP 1 Score: 606.3 bits (1562), Expect = 1.5e-173
Identity = 303/333 (90.99%), Postives = 319/333 (95.80%), Query Frame = 0


Query: 1   MASSSGSSS--SYDMPWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTG 60
           MASSS +S+   Y+ PWVEKYRPS+VVDIVGNEDAV RLQVIARDGNMPNLILSGPPGTG
Sbjct: 1   MASSSSTSTGDGYNEPWVEKYRPSKVVDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTG 60

Query: 61  KTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120
           KTTSILALAHELLG NYKE VLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD
Sbjct: 61  KTTSILALAHELLGTNYKEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILD 120

Query: 121 EADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILAR 180
           EADSMT+GAQQALRRT+EIYSN+TRFALACNTS+K+IEPIQSRCA+VRFSRL+DQ+IL R
Sbjct: 121 EADSMTSGAQQALRRTIEIYSNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGR 180

Query: 181 LMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPL 240
           L+VV+ AEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGF FVNQ+NVFKVCDQPHPL
Sbjct: 181 LLVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFSFVNQENVFKVCDQPHPL 240

Query: 241 HVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300
           HVKN+VRNVLE KFD AC GLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG
Sbjct: 241 HVKNIVRNVLESKFDIACDGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETG 300

Query: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 332
           FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP
Sbjct: 301 FAHMRICDGVGSYLQLCGLLAKLSIVRETAKAP 333

[Close]

BLAST of Clc10G03770 vs. TAIR 10
Match: AT1G21690.1 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 210.7 bits (535), Expect = 1.8e-54
Identity = 127/312 (40.71%), Postives = 171/312 (54.81%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQA 193
            AQ ALRRTME YS  TRF   CN  S++IEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHM 313
              + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDK 309

Query: 314 RICDGVGSYLQL 315
           R+ DG   YLQL
Sbjct: 310 RLVDGADEYLQL 321

[Close]

BLAST of Clc10G03770 vs. TAIR 10
Match: AT1G77470.1 (replication factor C subunit 3 )

HSP 1 Score: 203.8 bits (517), Expect = 2.2e-52
Identity = 115/322 (35.71%), Postives = 184/322 (57.14%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP  + D+  + D +  +  +  +  +P+L+L GPPGTGKT++ILA+A +L GP
Sbjct: 40  PWVEKYRPQSLDDVAAHRDIIDTIDRLTNENKLPHLLLYGPPGTGKTSTILAVARKLYGP 99

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFAQ-KKVTLPPGRHKVVILDEADSMTTGAQQALR 133
            Y+  +LELNASDDRGIDVVR +I+ FA  +  +L     K+V+LDEAD+MT  AQ ALR
Sbjct: 100 KYRNMILELNASDDRGIDVVRQQIQDFASTQSFSLGKSSVKLVLLDEADAMTKDAQFALR 159

Query: 134 RTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQAEKVPYVP 193
           R +E Y+ +TRFAL  N  +K+I  +QSRC   RF+ L    +  RL  V++AE++    
Sbjct: 160 RVIEKYTKSTRFALIGNHVNKIIPALQSRCTRFRFAPLDGVHMSQRLKHVIEAERLVVSD 219

Query: 194 EGLEAIIFTADGDMRQALNNLQATFSG--------FRFVNQDNVFKVCDQPHPLHVKNVV 253
            GL A++  ++GDMR+ALN LQ+T            + + +++V+     P P  ++ + 
Sbjct: 220 CGLAALVRLSNGDMRKALNILQSTHMASKEITEEESKQITEEDVYLCTGNPLPKDIEQIS 279

Query: 254 RNVLEGKFDDACAGLKQLYD-LGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMR 313
             +L   FD+    + ++    G +  DI+  +   I    M   ++++ + +      R
Sbjct: 280 HWLLNKPFDECYKDVSEIKTRKGLAIVDIVKEITLFIFKIKMPSAVRVQLINDLADIEYR 339

Query: 314 ICDGVGSYLQLCGLLAKLSIVR 326
           +  G    LQL  +++  +  R
Sbjct: 340 LSFGCNDKLQLGAIISTFTHAR 361

[Close]

BLAST of Clc10G03770 vs. TAIR 10
Match: AT1G21690.4 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 201.8 bits (512), Expect = 8.4e-52
Identity = 124/311 (39.87%), Postives = 168/311 (54.02%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L   
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLF-- 69

Query: 74  NYKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTTG 133
               GVLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT  
Sbjct: 70  ----GVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTED 129

Query: 134 AQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQAE 193
           AQ ALRRTME YS  TRF   CN  S++IEP+ SRCA  RF  L+++ +  R++ +   E
Sbjct: 130 AQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNEE 189

Query: 194 KVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVRN 253
            +    E L  +   + GD+R+A+  LQ+    F                PL V N +  
Sbjct: 190 GLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLFT 249

Query: 254 VLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRII--KNYDMAEYLKLEFMKETGFAHMR 313
             + G FD A   +  +   GY  + II  LF I+   + D+ +  K +  K       R
Sbjct: 250 ACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEADSDITDMQKAKICKCLAETDKR 309

Query: 314 ICDGVGSYLQL 315
           + DG   YLQL
Sbjct: 310 LVDGADEYLQL 314

[Close]

BLAST of Clc10G03770 vs. TAIR 10
Match: AT1G21690.3 (ATPase family associated with various cellular activities (AAA) )

HSP 1 Score: 199.9 bits (507), Expect = 3.2e-51
Identity = 118/280 (42.14%), Postives = 157/280 (56.07%), Query Frame = 0


Query: 14  PWVEKYRPSRVVDIVGNEDAVRRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGP 73
           PWVEKYRP +V D+   E+ VR L    +  + P+++  GPPGTGKTT+ LA+AH+L GP
Sbjct: 10  PWVEKYRPKQVKDVAHQEEVVRVLTNTLQTADCPHMLFYGPPGTGKTTTALAIAHQLFGP 69

Query: 74  N-YKEGVLELNASDDRGIDVVRNKIKMFA-------QKKVTLPPGRHKVVILDEADSMTT 133
             YK  VLELNASDDRGI+VVR KIK FA        ++   P    K++ILDEADSMT 
Sbjct: 70  ELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSNHRQSGYPCPSFKIIILDEADSMTE 129

Query: 134 GAQQALRRTMEIYSNTTRFALACNTSSKVIEPIQSRCAIVRFSRLTDQEILARLMVVLQA 193
            AQ ALRRTME YS  TRF   CN  S++IEP+ SRCA  RF  L+++ +  R++ +   
Sbjct: 130 DAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLSEEVMSNRILHICNE 189

Query: 194 EKVPYVPEGLEAIIFTADGDMRQALNNLQATFSGFRFVNQDNVFKVCDQPHPLHVKNVVR 253
           E +    E L  +   + GD+R+A+  LQ+    F                PL V N + 
Sbjct: 190 EGLSLDGEALSTLSSISQGDLRRAITYLQSATRLFGSTITSTDLLNVSGVVPLEVVNKLF 249

Query: 254 NVLE-GKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYD 285
              + G FD A   +  +   GY  + II  LF I+   D
Sbjct: 250 TACKSGDFDIANKEVDNIVAEGYPASQIINQLFDIVAEAD 289

The following BLAST results are available for this feature:

BLAST of Clc10G03770 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905731.1	2.1e-182	97.89	replication factor C subunit 2 [Benincasa hispida]	[more]
XP_008448956.1	3.1e-181	96.68	PREDICTED: replication factor C subunit 2 isoform X1 [Cucumis melo]	[more]
XP_022152824.1	1.5e-180	96.67	replication factor C subunit 2 [Momordica charantia]	[more]
XP_004147970.1	5.8e-180	96.07	replication factor C subunit 2 [Cucumis sativus] >KGN55951.1 hypothetical protei...	[more]
KAG6577570.1	1.4e-178	95.78	Replication factor C subunit 2, partial [Cucurbita argyrosperma subsp. sororia]	[more]

BLAST of Clc10G03770 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9CAM7	2.1e-172	90.99	Replication factor C subunit 2 OS=Arabidopsis thaliana OX=3702 GN=RFC2 PE=1 SV=1	[more]
Q7XRX1	4.2e-165	86.14	Replication factor C subunit 4 OS=Oryza sativa subsp. japonica OX=39947 GN=RFC4 ...	[more]
P35250	3.8e-126	67.19	Replication factor C subunit 2 OS=Homo sapiens OX=9606 GN=RFC2 PE=1 SV=3	[more]
Q05B83	8.6e-126	67.19	Replication factor C subunit 2 OS=Bos taurus OX=9913 GN=RFC2 PE=2 SV=1	[more]
Q641W4	1.1e-125	66.88	Replication factor C subunit 2 OS=Rattus norvegicus OX=10116 GN=Rfc2 PE=2 SV=1	[more]

BLAST of Clc10G03770 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BLV0	1.5e-181	96.68	replication factor C subunit 2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10349096...	[more]
A0A6J1DH57	7.4e-181	96.67	replication factor C subunit 2 OS=Momordica charantia OX=3673 GN=LOC111020446 PE...	[more]
A0A0A0L763	2.8e-180	96.07	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G038730 PE=3 SV...	[more]
A0A6J1E9R2	2.6e-178	95.48	replication factor C subunit 2 OS=Cucurbita moschata OX=3662 GN=LOC111431154 PE=...	[more]
A0A6J1HQ24	4.5e-178	95.20	replication factor C subunit 2 OS=Cucurbita maxima OX=3661 GN=LOC111465064 PE=3 ...	[more]

BLAST of Clc10G03770 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63160.1	1.5e-173	90.99	replication factor C 2	[more]
AT1G21690.1	1.8e-54	40.71	ATPase family associated with various cellular activities (AAA)	[more]
AT1G77470.1	2.2e-52	35.71	replication factor C subunit 3	[more]
AT1G21690.4	8.4e-52	39.87	ATPase family associated with various cellular activities (AAA)	[more]
AT1G21690.3	3.2e-51	42.14	ATPase family associated with various cellular activities (AAA)	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003593	AAA+ ATPase domain	SMART	SM00382	AAA_5	coord: 45..177 e-value: 1.1E-12 score: 58.2
None	No IPR available	GENE3D	1.20.272.10		coord: 235..327 e-value: 9.3E-30 score: 104.4
None	No IPR available	GENE3D	1.10.8.60		coord: 171..234 e-value: 2.8E-20 score: 73.6
None	No IPR available	PANTHER	PTHR11669:SF5	REPLICATION FACTOR C SUBUNIT 2	coord: 7..329
None	No IPR available	PANTHER	PTHR11669	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	coord: 7..329
None	No IPR available	CDD	cd18140	HLD_clamp_RFC	coord: 170..232 e-value: 3.64924E-19 score: 77.9545
None	No IPR available	CDD	cd00009	AAA	coord: 28..165 e-value: 1.00045E-25 score: 98.7575
IPR003959	ATPase, AAA-type, core	PFAM	PF00004	AAA	coord: 49..167 e-value: 2.8E-14 score: 53.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	GENE3D	3.40.50.300		coord: 7..170 e-value: 7.7E-57 score: 193.7
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 11..233
IPR013748	Replication factor C, C-terminal	PFAM	PF08542	Rep_fac_C	coord: 235..320 e-value: 1.7E-20 score: 73.2
IPR008921	DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal	SUPERFAMILY	48019	post-AAA+ oligomerization domain-like	coord: 234..325

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G03770.1	Clc10G03770.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006261	DNA-dependent DNA replication
biological_process	GO:0006281	DNA repair
biological_process	GO:0006260	DNA replication
cellular_component	GO:0005663	DNA replication factor C complex
cellular_component	GO:0005634	nucleus
cellular_component	GO:0009536	plastid
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003689	DNA clamp loader activity