Clc10G02405 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G02405
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	Photosystem II CP47 reaction center protein
Location	ClcChr10: 2385732 .. 2386169 (+)
RNA-Seq Expression	Clc10G02405
Synteny	Clc10G02405

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTCATACTTGCCCGACTGCCATCATACTATGATCATAGTATGAATAGTTTTTTGAAATTGTCAATATAAATATAATGGACTAATATGATGCAATTCTGTAGCATATTTCTATGTGAGTCTTAGCAAAATAGGATTAAGTTATTTCAGTAAATACATTCAACCAACTCCAATCCTTTTACCCATTAACATCTTAGAAGATTTCACAAAACCCTTATTAGTTTTCGACTTTTCGGAAATATATTAGCTGATGAATTAGTAGTTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

mRNA sequence

ATGGGGTCATACTTGCCCGACTGCCATCATACTATGATCATATTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Coding sequence (CDS)

ATGGGGTCATACTTGCCCGACTGCCATCATACTATGATCATATTGTTGTTCTTGTGGCATGCTTCATTTGCTTTGCTCTTCTTCTTCGGACACATTTGGCATGGTGCTAGAACCTTGTTCAGAGATGTCTTTGCTGGGATTGACCCAGATTTGGACGCTCAAGTAGAATTTGGGGCATTCCAAAAACTTGGAGATCCAACTACAAAAAGAGTCTAG

Protein sequence

MGSYLPDCHHTMIILLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV

Homology

[Close]

BLAST of Clc10G02405 vs. NCBI nr
Match: OMP12453.1 (Photosystem antenna protein-like protein [Corchorus olitorius])

HSP 1 Score: 115.9 bits (289), Expect = 1.4e-22
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 15  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Sbjct: 130 LVYFWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRR 185

[Close]

BLAST of Clc10G02405 vs. NCBI nr
Match: ALO21850.1 (PsbB [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. NCBI nr
Match: YP_009752607.1 (photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem II 47 kDa protein [Trichosanthes kirilowii] >QJD26496.1 PsbB [Trichosanthes kirilowii var. japonica] >QJD26670.1 PsbB [Trichosanthes rosthornii] >QIT05003.1 photosystem II 47 kDa protein [Trichosanthes homophylla] >QJD26321.1 PsbB [Trichosanthes kirilowii])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. NCBI nr
Match: YP_009751764.1 (photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QJR52983.1 photosystem II CP47 chlorophyll apoprotein [Herpetospermum pedunculosum])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. NCBI nr
Match: ADM63359.1 (photosystem II cp47 protein, partial [Scaevola auriculata])

HSP 1 Score: 112.5 bits (280), Expect = 1.5e-21
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 445 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 496

[Close]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot
Match: A4QJE1 (Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot
Match: A4QJM5 (Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot
Match: A4QK44 (Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot
Match: P56777 (Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=psbB PE=1 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot
Match: Q7FNS4 (Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psbB PE=3 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 5.9e-24
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

[Close]

BLAST of Clc10G02405 vs. ExPASy TrEMBL
Match: A0A1R3KZB8 (Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO4_03185 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 6.7e-23
Identity = 52/56 (92.86%), Postives = 55/56 (98.21%), Query Frame = 0


Query: 15  LLFLWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           L++ WHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTT+R
Sbjct: 130 LVYFWHASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTRR 185

[Close]

BLAST of Clc10G02405 vs. ExPASy TrEMBL
Match: A0A6H0ERV3 (Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. ExPASy TrEMBL
Match: G3ETS3 (Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=412675 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. ExPASy TrEMBL
Match: A0A1S4EU40 (Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. ExPASy TrEMBL
Match: A0A249RZY7 (Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis OX=3658 GN=psbB PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 7.5e-22
Identity = 52/52 (100.00%), Postives = 52/52 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 72
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKRV 506

[Close]

BLAST of Clc10G02405 vs. TAIR 10
Match: ATCG00680.1 (photosystem II reaction center protein B )

HSP 1 Score: 110.9 bits (276), Expect = 4.2e-25
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 0


Query: 20  HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 71
           HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR
Sbjct: 455 HASFALLFFFGHIWHGARTLFRDVFAGIDPDLDAQVEFGAFQKLGDPTTKR 505

The following BLAST results are available for this feature:

BLAST of Clc10G02405 vs. NCBI nr


Match Name	E-value	Identity	Description
OMP12453.1	1.4e-22	92.86	Photosystem antenna protein-like protein [Corchorus olitorius]	[more]
ALO21850.1	1.5e-21	100.00	PsbB [Cucurbita argyrosperma subsp. sororia]	[more]
YP_009752607.1	1.5e-21	100.00	photosystem II 47 kDa protein [Trichosanthes homophylla] >QIT05088.1 photosystem...	[more]
YP_009751764.1	1.5e-21	100.00	photosystem II 47 kDa protein [Herpetospermum pedunculosum] >QIT04497.1 photosys...	[more]
ADM63359.1	1.5e-21	100.00	photosystem II cp47 protein, partial [Scaevola auriculata]	[more]

BLAST of Clc10G02405 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
A4QJE1	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Aethionema cordifolium OX=434059 ...	[more]
A4QJM5	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Aethionema grandiflorum OX=72657 ...	[more]
A4QK44	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Arabis hirsuta OX=78191 GN=psbB P...	[more]
P56777	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Arabidopsis thaliana OX=3702 GN=p...	[more]
Q7FNS4	5.9e-24	100.00	Photosystem II CP47 reaction center protein OS=Atropa belladonna OX=33113 GN=psb...	[more]

BLAST of Clc10G02405 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1R3KZB8	6.7e-23	92.86	Photosystem antenna protein-like protein OS=Corchorus olitorius OX=93759 GN=COLO...	[more]
A0A6H0ERV3	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Trichosanthes kirilowii OX=3677 G...	[more]
G3ETS3	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo subsp. melo OX=41267...	[more]
A0A1S4EU40	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo OX=3656 GN=psbB PE=3...	[more]
A0A249RZY7	7.5e-22	100.00	Photosystem II CP47 reaction center protein OS=Cucumis melo var. cantalupensis O...	[more]

BLAST of Clc10G02405 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG00680.1	4.2e-25	100.00	photosystem II reaction center protein B	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000932	Photosystem antenna protein-like	PFAM	PF00421	PSII	coord: 18..65 e-value: 2.6E-19 score: 69.3
IPR000932	Photosystem antenna protein-like	PANTHER	PTHR33180	PHOTOSYSTEM II CP43 REACTION CENTER PROTEIN	coord: 18..70
None	No IPR available	PANTHER	PTHR33180:SF14	PHOTOSYSTEM II CP47 REACTION CENTER PROTEIN	coord: 18..70
IPR036408	Photosystem I PsaA/PsaB superfamily	SUPERFAMILY	81558	Photosystem I subunits PsaA/PsaB	coord: 4..71

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G02405.1	Clc10G02405.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009772	photosynthetic electron transport in photosystem II
biological_process	GO:0018298	protein-chromophore linkage
biological_process	GO:0019684	photosynthesis, light reaction
biological_process	GO:0009767	photosynthetic electron transport chain
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009523	photosystem II
cellular_component	GO:0016020	membrane
cellular_component	GO:0009521	photosystem
molecular_function	GO:0016168	chlorophyll binding
molecular_function	GO:0045156	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity