Clc10G02370 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G02370
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionE3 ubiquitin-protein ligase RNF34
LocationClcChr10: 2311141 .. 2315528 (+)
RNA-Seq ExpressionClc10G02370
SyntenyClc10G02370
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACAAGAATAAGCATTGGTATTTTTCTTCTTGTTGAAATTTTCTCTTTTGCTCCCTCAAGTCTAAAAGTTCTTCTATTATCTTTTGCTAGCTTGAGAATAAAGTGGCCCTTTTTTTTAATTCAAATGAAATGGGTGAAGGGAGATTCAATAGTAGCTCATGTTAGTGGAGAAAATTTTTTTAATGATAAATTTAATCATTACAGATTTGATAACCATTTTATAATTTAAAAAAAAATAATAAATTAAATTTTTTAACACTACTTTCATTTTGTTTTGATATCAACTTTTTAAATATATTTTTTAAAGCCAAGTTTCTTTACCTCGCTTTTTAATTTTAAGAAAAAGTCCAAGTTTCTTTCTCTCTTTTTAATTTTAAGAATCTGACTAAAAATTAAAATTTTTCTATTAAAAAAGGAATATTATTTTAAAGGAAAAATATCAAACTATTTAAAAAAAAAAAAAAATTACTGCAACCTATTGTCAAATATTGTGGCAAAATAAGCATTATTTTAAAAATATAAAATAAAAGCCAGAAAGGCATATACTTTGAAAGAAGCTTGTACAATTTGAAGAAGAATCTACTTCAATCTATATGCAGGTTCTCCGTAATAATTATAACTCATACCCTTAGCCAATTTAGCTCTTAATATAGGATTATTCAAATATGGTTTTTTTGTTATTAGTATAGGCGAATTATTATGGATCCATCCCCCGAAGATTCCTCACTGGTGCCCCCCTCCCCGTGGGAGTCTGGGTTGTGTCTCAATCCCAATGTGGTTGATCATCTGAAAAGACCAAAAGTTTTGAACTTTGATATTTAATGGAAAAAAACAACAATAGCTAGTGACATTACCTAAATTTTTAAAATTTAATGAACGTATATAAACAAAAATTGGACATTTAAAAATATAGGGTCCCATTGGTACAAACGTAAAAGTAAGCTACTAATATTTCATCCAAAAAAAATTATTTAAAAAATAAGAATCATTCAATTGAATTTTTTTTTTTAAAAAAAAAAAAAAAAACTCCTTTTTTTTCCTTAAACCCTATTTCACCATCAGCTACTCCCTCCCTCCACTTCCCAGCCGCCGCACGCCGTCTCAGCGTGTGCCGCAATCTCAACCTTCCGGCGACATCGCCGCCGCTGCCTCCCTCCTTCCAAATTCAAGGGTTCCAACTTCCTACACGGGGGATAAAACGAAAAACCATTCCCATTGGAACGATTTTTGGTCCCCAAACCAATTTCTCGGCTCTACTGAAGGCGAACGCCGGTCGGCAAACAGTTTCTCGGCGACGCCTCTTCAGCTCTTTCTTCCTTCCTTACAGTCGTCGGAAAGTGCTTCCGGCCGACGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTCGGACAAAACGCAGGTTCATCCGACTTTCTCTGCCCCTCAATCTCTCAATTTCTTTCTTTCCCTCTCTAGCCGTATTGTGATTTCTTCTAATCAATGGATGGAGGGCTTCTTTTTTCTTTGCAGCTAGAAGAGGGGGAAAGATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGGTATTTTTTTTATGGTCAAATTTTCTTCGTTTTAGCCTATATTGAATGTTAGGATTAGTAATTGTTTATCAACTAAACTTTGCCTATATCAGAGTCCTCATTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAACCCTGTACAGAACCAGCTTCAAAAAGCCTAGGTACAACATACTTTCGTTTCGACCTTTTTTTCTTAGTTTTTTAATTTCTATTATTTGCTGCTTCTTTTAGTTTGAAATATGGACACGAGCATAGAATCTTTACTGCATTGACATTTAAGAGGTTAATTGCGGACATGGGTACACCCGTTAAATCATAATTTCAACTGTCTTCCCTAGTTTTTTGTTTAATGTTGGCTAGATTGTAAGTTTAGGAAATGGTGCTTGTTGCAAAAGCTATCCATGGACATGTATGCTTGATGAACCATCATGGATTTGCTTAGTGGTAGTGGAAACATTAAAAAAAAAAAATACATGTATCATGATGGATGGTTAGGAAATACTCACTGGTTGATACCCTTATCTTGGTTTTCTCGTCATATGGAGATATATTGGTTTTTTTTAGTGCCAATTTTTTTAGCTTTTGCAAATTATGTTTTGTTTTCTCTTATGCAAGTGATGAATTTTCGGTTGCTGGTGTTTAAAACTTTGAGTATTGTGCAGTTTGAAGTAACATATAGTGGTTGGAAATTTCTTGACTATATAACATTGTAGTGTTGTTGGGTTACTACCTATTGCTAACTTTATGGCACTGTTATGAGAAGTAATGTAGAGGTTGTTTGTAGCGGTGTTTCCAACTATAGAACATCTTCACTTCAGCTGGAAACTTACCTCCCTCTTTCATGTCATTTGAGTACTACAATTGGAACATAGAACATTCAGCATCAAATTTGAAAATATTATGGTGCTTGTTTCTTCTTAGGAGTTGCAAACTTTGCTCACTTCCTTTTCACTTATTGTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGTTTGCATATTGACCAATGACTACTTAAATTTGAATCTATGTTTTCATTGTTCCTGATCTATACATGATTGTCAATTGTCATAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGTAAGTCACTTTTCCTTGTATTGTTGCATCGTGGATGTTGTAGCTTGATTTTTCATCGTTCATAATGTCGTGATTTGATCTTAAACAGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGGTAAATTGAAAAAGCGACCTAAGATTCTAGAGCTCTCTTAAGAGTCATCTGTCGATCACGCCTGTTGTGTCAATATGGATGCATCGTTATGGTTTTAAAGTTTCGTTCACAATCGGTGTCATTGGGGGAGTATATGAAGTTTCTGAAACTTGCACTGACAAAATCTCCAAGGTTGATAGGGAGCCTAGTCCTTTGAGCGTGGAGGGCAGGAAGCAATTTTGCTCGACCTTATGATTTCAGGTTATTCTCTATCGCTTCGACCTTATGGTTTCAGGTTATTTCTCTATTCGCCTCTATCATGATTTCAAGTGCAGGGAAAGGGAAGGTGCTGTCTTTATGCATTTCTATTAGGAACTCTAATATAATTTAAGTTGTAATTATAATTGGTCAGTTTGCCAATTTTGGTTTGTATACTTGATGACGCACTTTGACTTCAGAAATGGTTTTTTTTTTTTTTTTTTTTTTTCACTTGAGTGTGAATCATCTCTTTTTTATATGTTGTAGCTTCAGAGTGAGAAGTTAAGTAGTTTTGGCTTAAAATCATGTGCATGAATAATTCTTAGTTAGAAGTGTTTTTCATGGTAATAACGGTATATCTATAGAAAGAAGAGTGATTTTGAAATAAAAATCACTTTTTCATGTTTAAAATTAATTTAATATTTAATTTTACACTTTTTGATGCATTTTTATACTAATAAAATTGATTATGAATTATTAAAAAAAATATATTTTTAAATGATTTTGACAGTGACAAAATGATTTTGACCTTTTTAGAATCACTCGGGAACGTACTACATACTATTTGATATGTTTCCTTGCAATTTTTTGCATCATAATCACATCTTTTGCATTTTGATTTTTTTTTTTTTTTTTTTGAAACAAATGCATTAGCCGAAACATCACCAACAAACATGGAAACCATCAACCCCTTCAAGAACAAAGGGAAGAACAAAAGTTGGAAAGTCATCTTTCTAAACCTAAGCTGACTCAGAAGAGGAAGCCAACGAAGCTAAAATGTGCACAATTTTGTTCTCCTCTCTAGGGATCTTACAAAAATGATAGATATTTACAAAAGTAGTGGGGTAAGAGCATCCTTCAAAAAAAAGAAAAAAAAATTGACTTCAAACATATTAGAATTCATATGGTTCAACAATCTAACCACCTCCAAAGTATCACAATCTTTCTAACTTAGTAAGACCAACCAGCACATCTTTAACTTCCAAAACAAAACAAG

mRNA sequence

ATGAACAAGAATAAGCATTGCTACTCCCTCCCTCCACTTCCCAGCCGCCGCACGCCGTCTCAGCGTGTGCCGCAATCTCAACCTTCCGGCGACATCGCCGCCGCTGCCTCCCTCCTTCCAAATTCAAGGGTTCCAACTTCCTACACGGGGGATAAAACGAAAAACCATTCCCATTGGAACGATTTTTGGTCCCCAAACCAATTTCTCGGCTCTACTGAAGGCGAACGCCGGTCGGCAAACAGTTTCTCGGCGACGCCTCTTCAGCTCTTTCTTCCTTCCTTACAGTCGTCGGAAAGTGCTTCCGGCCGACGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTCGGACAAAACGCAGAAGAGGGGGAAAGATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGAGTCCTCATTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAACCCTGTACAGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGTTTCGTTCACAATCGGTGTCATTGGGGGAGTATATGAAGTTTCTGAAACTTGCACTGACAAAATCTCCAAGGTTGATAGGGAGCCTAGTCCTTTGAGCGTGGAGGGCAGGAAGCAATTTTGCTCGACCTTATGATTTCAGCCGAAACATCACCAACAAACATGGAAACCATCAACCCCTTCAAGAACAAAGGGAAGAACAAAAGTTGGAAAGTCATCTTTCTAAACCTAAGCTGACTCAGAAGAGGAAGCCAACGAAGCTAAAATGTGCACAATTTTGTTCTCCTCTCTAGGGATCTTACAAAAATGATAGATATTTACAAAAGTAGTGGGGTAAGAGCATCCTTCAAAAAAAAGAAAAAAAAATTGACTTCAAACATATTAGAATTCATATGGTTCAACAATCTAACCACCTCCAAAGTATCACAATCTTTCTAACTTAGTAAGACCAACCAGCACATCTTTAACTTCCAAAACAAAACAAG

Coding sequence (CDS)

ATGAACAAGAATAAGCATTGCTACTCCCTCCCTCCACTTCCCAGCCGCCGCACGCCGTCTCAGCGTGTGCCGCAATCTCAACCTTCCGGCGACATCGCCGCCGCTGCCTCCCTCCTTCCAAATTCAAGGGTTCCAACTTCCTACACGGGGGATAAAACGAAAAACCATTCCCATTGGAACGATTTTTGGTCCCCAAACCAATTTCTCGGCTCTACTGAAGGCGAACGCCGGTCGGCAAACAGTTTCTCGGCGACGCCTCTTCAGCTCTTTCTTCCTTCCTTACAGTCGTCGGAAAGTGCTTCCGGCCGACGCCCGGCCTTTGCAGTTGTGACTATCTCTATTTCTCGGACAAAACGCAGAAGAGGGGGAAAGATGCGGCATGCTAGCAAAGATCTTTTGTATTTGGAGCGGAAGGATTTATCCTCTTCGTCTTTAGAGTCCTCATTGCTAGTTTGTAAAAAGAACTCGGAGCCCTGCCGGAATGAAAAACCCTGTACAGAACCAGCTTCAAAAAGCCTAGTATTGGGAAGAGTCAAAGACTTTTTAGGAGTAATATCAGAAGCTAATAAAAAGCTGCAAATGGATGCAAAGGAAAATGCTGAAAAATATGATATCGAAACCCTCGATGGCAATGAATCAGAAGTGATTGAATTGGACCTGATGCTGGGTATTGCGGATCTTCATACTCCTGAAGCTGTGGCTGCTGCTGAATCTGCAATAATCGGTAATCAGCCTGTAATTCCATTGACTTGTAGTAGTAGTGAGTCGGATTCTGAAGAGAGTAGCGATGATAGTATTACCGGTGACAACAATAATGATGACAATGAAAAGAGTGACAATCAGTATACTGACCACAGTAACAAATCGTCATTCAAACTCAAAAGATCGAATTCTAGGAAAACCAGCTGTAGAAGTAAAAGCAAAGGAAAAGTTTCGTTCACAATCGGTGTCATTGGGGGAGTATATGAAGTTTCTGAAACTTGCACTGACAAAATCTCCAAGGTTGATAGGGAGCCTAGTCCTTTGAGCGTGGAGGGCAGGAAGCAATTTTGCTCGACCTTATGA

Protein sequence

MNKNKHCYSLPPLPSRRTPSQRVPQSQPSGDIAAAASLLPNSRVPTSYTGDKTKNHSHWNDFWSPNQFLGSTEGERRSANSFSATPLQLFLPSLQSSESASGRRPAFAVVTISISRTKRRRGGKMRHASKDLLYLERKDLSSSSLESSLLVCKKNSEPCRNEKPCTEPASKSLVLGRVKDFLGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIGNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKTSCRSKSKGKVSFTIGVIGGVYEVSETCTDKISKVDREPSPLSVEGRKQFCSTL
Homology
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BLAST of Clc10G02370 vs. NCBI nr
Match: XP_038903017.1 (uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 uncharacterized protein LOC120089721 [Benincasa hispida])

HSP 1 Score: 295.4 bits (755), Expect = 6.4e-76
Identity = 172/190 (90.53%), Postives = 179/190 (94.21%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   EP RNEKP TEPASKSLVLGRVKDF
Sbjct: 1   MRH-SKDLLYLERKDLSSSSLESSLLVCKKNSTSKEPRRNEKPITEPASKSLVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMDAK+NAEKYDIE LDGNES+VIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDAKDNAEKYDIEALDGNESKVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTC-SSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRK 304
           GNQPVIPLTC SSSES+SEESSDDSIT ++NNDDNEKSD+Q TDHSN+SS KLKRSNSRK
Sbjct: 121 GNQPVIPLTCSSSSESESEESSDDSITSNDNNDDNEKSDDQNTDHSNRSSVKLKRSNSRK 180

Query: 305 TSCRSKSKGK 311
           TSCRSKSKGK
Sbjct: 181 TSCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. NCBI nr
Match: XP_004147238.2 (uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.4e-75
Identity = 167/189 (88.36%), Postives = 175/189 (92.59%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   +P RNEKP TEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 245 GNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKT 304
           GN PVIPLTCSSSES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 305 SCRSKSKGK 311
           SCRSKSKGK
Sbjct: 181 SCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. NCBI nr
Match: XP_008448773.1 (PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa] >TYK12053.1 E3 ubiquitin-protein ligase RNF34 [Cucumis melo var. makuwa])

HSP 1 Score: 293.1 bits (749), Expect = 3.2e-75
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKP TEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKT 304
           GN PVIPLTCSSSES+SEESSDDSIT D++N+DNEKSD+Q TD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 305 SCRSKSKGK 311
           SCRSKSKGK
Sbjct: 181 SCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. NCBI nr
Match: XP_011650372.1 (uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hypothetical protein Csa_010190 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 7.8e-74
Identity = 167/193 (86.53%), Postives = 175/193 (90.67%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSL----ESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGR 184
           MRH SKDLLYLERKDLSSSSL    ESSLLVCKKNS   +P RNEKP TEPASKSLVLGR
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLGVFNESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGR 60

Query: 185 VKDFLGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAE 244
           VKDFLGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAE
Sbjct: 61  VKDFLGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAE 120

Query: 245 SAIIGNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSN 304
           SAIIGN PVIPLTCSSSES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSN
Sbjct: 121 SAIIGNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSN 180

Query: 305 SRKTSCRSKSKGK 311
           SRKTSCRSKSKGK
Sbjct: 181 SRKTSCRSKSKGK 193

[Close]
BLAST of Clc10G02370 vs. NCBI nr
Match: KAG6596894.1 (hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 271.9 bits (694), Expect = 7.6e-69
Identity = 157/192 (81.77%), Postives = 171/192 (89.06%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL LERKDL SSSLESSLLVCKKNS   EPCRNEKP TEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGV+SEANKKLQ+DAK++AEKYDIE L+G+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTC---SSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNS 304
           GNQPVIPL C   SSSES+SEESSDDSIT DNN++DNEKSDNQ +D  N+ S KLKRS S
Sbjct: 121 GNQPVIPLNCSSSSSSESESEESSDDSITSDNNDNDNEKSDNQNSDRGNRLSVKLKRSKS 180

Query: 305 RKTSCRSKSKGK 311
           R+T+CRS+SK K
Sbjct: 181 RRTNCRSESKEK 192

[Close]
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match: A0A0A0L448 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 6.9e-76
Identity = 167/189 (88.36%), Postives = 175/189 (92.59%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRH SKDLLYLERKDLSSSSLESSLLVCKKNS   +P RNEKP TEPASKSLVLGRVKDF
Sbjct: 1   MRHPSKDLLYLERKDLSSSSLESSLLVCKKNSTSKDPTRNEKPITEPASKSLVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMD+KENAEKYDIE LDGNESEVI+LDLMLGIADLHTPEAV AAESAII
Sbjct: 61  LGVISEANKKLQMDSKENAEKYDIEALDGNESEVIQLDLMLGIADLHTPEAVTAAESAII 120

Query: 245 GNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKT 304
           GN PVIPLTCSSSES+SEESSDDSIT D++NDDNEKSD+Q TD SN+ S KLKRSNSRKT
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNDDNEKSDDQKTDCSNRLSVKLKRSNSRKT 180

Query: 305 SCRSKSKGK 311
           SCRSKSKGK
Sbjct: 181 SCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match: A0A5D3CJH5 (E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1017G00670 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKP TEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKT 304
           GN PVIPLTCSSSES+SEESSDDSIT D++N+DNEKSD+Q TD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 305 SCRSKSKGK 311
           SCRSKSKGK
Sbjct: 181 SCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match: A0A1S3BJW4 (uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=4 SV=1)

HSP 1 Score: 293.1 bits (749), Expect = 1.5e-75
Identity = 165/189 (87.30%), Postives = 177/189 (93.65%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL+LERKDLS+SSLESSLLVCKKNS   EPCRNEKP TEPASKSLVLGRV+DF
Sbjct: 1   MRHASKDLLHLERKDLSTSSLESSLLVCKKNSTSKEPCRNEKPITEPASKSLVLGRVQDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGVISEANKKLQMD+KENA+KYDIE LDGNESEVI+LDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVISEANKKLQMDSKENADKYDIEALDGNESEVIQLDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTCSSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNSRKT 304
           GN PVIPLTCSSSES+SEESSDDSIT D++N+DNEKSD+Q TD SN+ S KLKRSNSRK 
Sbjct: 121 GNHPVIPLTCSSSESESEESSDDSITSDHDNNDNEKSDDQNTDCSNRLSVKLKRSNSRKA 180

Query: 305 SCRSKSKGK 311
           SCRSKSKGK
Sbjct: 181 SCRSKSKGK 189

[Close]
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match: A0A6J1KZJ8 (uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111498503 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 156/193 (80.83%), Postives = 169/193 (87.56%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL LERKDL SSSLESSLLVCKKNS   EPCRNEKP TEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSLESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGV+SEANKKLQ+DAK++AEKYDIE L+GNESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGNESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTC----SSSESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSN 304
           GNQPVIPL C    SSSES+SEESSDDSIT DNN++DNEKSD Q TD  N+ S KLKRS 
Sbjct: 121 GNQPVIPLNCSSSSSSSESESEESSDDSITSDNNDNDNEKSDTQNTDRGNRLSVKLKRSK 180

Query: 305 SRKTSCRSKSKGK 311
           SR+ +CRS+S+ K
Sbjct: 181 SRRANCRSESREK 193

[Close]
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match: A0A6J1F913 (uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111443185 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-68
Identity = 157/192 (81.77%), Postives = 168/192 (87.50%), Query Frame = 0 

Query: 125 MRHASKDLLYLERKDLSSSSLESSLLVCKKNS---EPCRNEKPCTEPASKSLVLGRVKDF 184
           MRHASKDLL LERKDL SSS ESSLLVCKKNS   EPCRNEKP TEPA KS VLGRVKDF
Sbjct: 1   MRHASKDLLCLERKDLPSSSFESSLLVCKKNSTSKEPCRNEKPITEPAPKSQVLGRVKDF 60

Query: 185 LGVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAII 244
           LGV+SEANKKLQ+DAK++AEKYDIE L+G+ESEVIELDLMLGIADLHTPEAVAAAESAII
Sbjct: 61  LGVLSEANKKLQLDAKDDAEKYDIEALNGDESEVIELDLMLGIADLHTPEAVAAAESAII 120

Query: 245 GNQPVIPLTCSSS---ESDSEESSDDSITGDNNNDDNEKSDNQYTDHSNKSSFKLKRSNS 304
           GNQPVI L CSSS   ES+SEESSDDSIT DNN+DDNEKSDNQ TD  N+ S KLKR  S
Sbjct: 121 GNQPVIALNCSSSSSGESESEESSDDSITSDNNDDDNEKSDNQNTDRGNRLSVKLKRLKS 180

Query: 305 RKTSCRSKSKGK 311
           RKT+CRS+SK K
Sbjct: 181 RKTNCRSESKEK 192

[Close]
BLAST of Clc10G02370 vs. TAIR 10
Match: AT1G71430.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 64 Blast hits to 64 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 14; Fungi - 6; Plants - 42; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink). )

HSP 1 Score: 112.1 bits (279), Expect = 9.3e-25
Identity = 77/145 (53.10%), Postives = 98/145 (67.59%), Query Frame = 0 

Query: 130 KDLLYLERKDLSSSS-LESSLLVC------KKNSEPCRNEKPCTEPASKSLVLGRVKDFL 189
           KDLL LE K+ SSSS ++S+LL+C      KK  E     KP   P  KS +LG++K FL
Sbjct: 8   KDLLKLELKNPSSSSAMDSALLMCTDKNKKKKKMEAPPPSKPTIAPVPKSQLLGKLKGFL 67

Query: 190 GVISEANKKLQMDAKENAEKYDIETLDGNESEVIELDLMLGIADLHTPEAVAAAESAIIG 249
           GV++EANKK    ++ N E Y+IE L GNESE+IE+DLMLG+ADL+TPEAV+AAE+AI G
Sbjct: 68  GVMAEANKK----SEANPEAYNIEALTGNESELIEMDLMLGVADLNTPEAVSAAEAAIAG 127

Query: 250 NQPVIPLTCSSS--ESDSEESSDDS 266
             P      SSS  ESDSE   ++S
Sbjct: 128 IGPAAESGDSSSDDESDSESEGEES 148

The following BLAST results are available for this feature:
BLAST of Clc10G02370 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_038903017.16.4e-7690.53uncharacterized protein LOC120089721 [Benincasa hispida] >XP_038903019.1 unchara... [more]
XP_004147238.21.4e-7588.36uncharacterized protein LOC101206707 isoform X2 [Cucumis sativus][more]
XP_008448773.13.2e-7587.30PREDICTED: uncharacterized protein LOC103490838 [Cucumis melo] >KAA0041045.1 E3 ... [more]
XP_011650372.17.8e-7486.53uncharacterized protein LOC101206707 isoform X1 [Cucumis sativus] >KGN55834.2 hy... [more]
KAG6596894.17.6e-6981.77hypothetical protein SDJN03_10074, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Clc10G02370 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc10G02370 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L4486.9e-7688.36Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G017130 PE=4 SV=1[more]
A0A5D3CJH51.5e-7587.30E3 ubiquitin-protein ligase RNF34 OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A1S3BJW41.5e-7587.30uncharacterized protein LOC103490838 OS=Cucumis melo OX=3656 GN=LOC103490838 PE=... [more]
A0A6J1KZJ81.8e-6880.83uncharacterized protein LOC111498503 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
A0A6J1F9131.8e-6881.77uncharacterized protein LOC111443185 isoform X1 OS=Cucurbita moschata OX=3662 GN... [more]
BLAST of Clc10G02370 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G71430.19.3e-2553.10unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR027921NOP protein chaperone 1PFAMPF15370DUF4598coord: 175..286
e-value: 1.1E-16
score: 61.2
IPR027921NOP protein chaperone 1PANTHERPTHR28674SIMILAR TO DNA SEGMENT, CHR 10, WAYNE STATE UNIVERSITY 102,-EXPRESSEDcoord: 126..300
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..56
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 292..306
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 14..32
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 250..309
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 270..291

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G02370.1Clc10G02370.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000492 box C/D snoRNP assembly
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0062064 box C/D snoRNP complex binding