Clc10G01720 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G01720
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich cell wall structural protein 1.8-like
LocationClcChr10: 1607755 .. 1608697 (+)
RNA-Seq ExpressionClc10G01720
SyntenyClc10G01720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TGCATTTTCCAGGCATTCTACACATTCTCAAATTCTCTCTCCATGGCTATCCTTAGAGGGTTGTGCCTTTCCTTTCTTCTCTTTGTTGGGTTAGGTCTAGCTTCGGCTGCCAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTAGTCCAAGAGTAGGCTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCAAGCAGAGGACATGGAATTGGAGACTCTGCTCTTGGAGGTTCCGGACGATATGAAGGTGGTAGAGGACGTGATTCTGGATATGGAGGTCGAAACGATGATCGTGGTGTTGGATATGGAAATGGTGGTGGATATGGAGGTGCAGTAGGACATGGTGATGGTTATGGTAACAATGGTGATGGAGGCTATGGAAATCGTTATGGCCCTTCCCTTGGAGGCTCGGGATATGGAAGTGGTAATGGATATGACCAAGGAAGAGATCATGGTGTGGGTTATGGAAGTAAAGGAGGTGCTGAATCAAGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACATGACAATGGTTATGGGAGTGGTGGAGGAGCTAGTGGTGGGTATGGAGTAGGCAGCCATGGTGTTGGTTATGGTAATGGAGGTGTGCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGGAAATTGAGAAACCCTTTTTTCTAATGTAATGAGCCCAATATTCATATTATGTCAACAAAAATAAAGAAATTGGGTAGGAGTGAATGTTGTTTTCTAAATCTATATCGAAGTTGCTATCTAATGAATGTGGAATTCGATGTGTTTCAATGATAAATAAATTTGGATTACATTTATATGAGGAAAATTGCTTGGACCATATA

mRNA sequence

TGCATTTTCCAGGCATTCTACACATTCTCAAATTCTCTCTCCATGGCTATCCTTAGAGGGTTGTGCCTTTCCTTTCTTCTCTTTGTTGGGTTAGGTCTAGCTTCGGCTGCCAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTAGTCCAAGAGTAGGCTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCAAGCAGAGGACATGGAATTGGAGACTCTGCTCTTGGAGGTTCCGGACGATATGAAGGTGGTAGAGGACGTGATTCTGGATATGGAGGTCGAAACGATGATCGTGGTGTTGGATATGGAAATGGTGGTGGATATGGAGGTGCAGTAGGACATGGTGATGGTTATGGTAACAATGGTGATGGAGGCTATGGAAATCGTTATGGCCCTTCCCTTGGAGGCTCGGGATATGGAAGTGGTAATGGATATGACCAAGGAAGAGATCATGGTGTGGGTTATGGAAGTAAAGGAGGTGCTGAATCAAGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACATGACAATGGTTATGGGAGTGGTGGAGGAGCTAGTGGTGGGTATGGAGTAGGCAGCCATGGTGTTGGTTATGGTAATGGAGGTGTGCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGGAAATTGAGAAACCCTTTTTTCTAATGTAATGAGCCCAATATTCATATTATGTCAACAAAAATAAAGAAATTGGGTAGGAGTGAATGTTGTTTTCTAAATCTATATCGAAGTTGCTATCTAATGAATGTGGAATTCGATGTGTTTCAATGATAAATAAATTTGGATTACATTTATATGAGGAAAATTGCTTGGACCATATA

Coding sequence (CDS)

ATGGCTATCCTTAGAGGGTTGTGCCTTTCCTTTCTTCTCTTTGTTGGGTTAGGTCTAGCTTCGGCTGCCAGAACTCTTCTTGATTATGATCCACGTACACGTCACTATGATTATGATCGTCCTAGTCCAAGAGTAGGCTACGATCCTAGCCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCAAGCAGAGGACATGGAATTGGAGACTCTGCTCTTGGAGGTTCCGGACGATATGAAGGTGGTAGAGGACGTGATTCTGGATATGGAGGTCGAAACGATGATCGTGGTGTTGGATATGGAAATGGTGGTGGATATGGAGGTGCAGTAGGACATGGTGATGGTTATGGTAACAATGGTGATGGAGGCTATGGAAATCGTTATGGCCCTTCCCTTGGAGGCTCGGGATATGGAAGTGGTAATGGATATGACCAAGGAAGAGATCATGGTGTGGGTTATGGAAGTAAAGGAGGTGCTGAATCAAGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACATGACAATGGTTATGGGAGTGGTGGAGGAGCTAGTGGTGGGTATGGAGTAGGCAGCCATGGTGTTGGTTATGGTAATGGAGGTGTGCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGTTATGATGGTGGATATGCCGTCAAAAACTCCATCTCAAAGGGAAATTGA

Protein sequence

MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAYGGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGNNGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGAHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN
Homology
BLAST of Clc10G01720 vs. NCBI nr
Match: XP_038903421.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 332.0 bits (850), Expect = 4.1e-87
Identity = 199/247 (80.57%), Postives = 209/247 (84.62%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MA  R LC  FL+FV  GLASAARTLLDYDPRTRHYDYDRP+PRVGYDPSHRD SYDNAY
Sbjct: 12  MATTRVLCFGFLVFVCFGLASAARTLLDYDPRTRHYDYDRPTPRVGYDPSHRDGSYDNAY 71

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
           G SS RG+GIGDSALGGSG+YEG RG DSGYGGRNDDRGVGYGNGGGYGG  GHG+GYG 
Sbjct: 72  GRSSGRGYGIGDSALGGSGQYEGDRGHDSGYGGRNDDRGVGYGNGGGYGGIEGHGNGYGR 131

Query: 121 NGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSR-------GY 180
           NG G Y NR GPSLGGSGYGSG+GYDQGRDHGVGYGS+GGA+SSNGYGDSR       GY
Sbjct: 132 NGGGSYENRDGPSLGGSGYGSGDGYDQGRDHGVGYGSRGGADSSNGYGDSRGYQARDNGY 191

Query: 181 GAHDNGYGSGGGASGGYGVGSHG-----VGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVK 236
           GAHDN YGSGGGA GGYGVG HG      GYGNGGVHGGEYDN+KGSG EGGYDGGYAVK
Sbjct: 192 GAHDNVYGSGGGAGGGYGVGGHGGGIGSGGYGNGGVHGGEYDNNKGSG-EGGYDGGYAVK 251

BLAST of Clc10G01720 vs. NCBI nr
Match: XP_038903641.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 323.9 bits (829), Expect = 1.1e-84
Identity = 197/253 (77.87%), Postives = 204/253 (80.63%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAI R LC   LLFV LGLASAAR LLDYDPRTRHYDYDRPSPRVGYDPSHRD SYDN+Y
Sbjct: 1   MAIPRVLCFGLLLFVSLGLASAARILLDYDPRTRHYDYDRPSPRVGYDPSHRDGSYDNSY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
           GG S+RG+GIGDSALGGSGRYEGG   +  Y   NDDRGVGYGNGGGYGG  GHGDGYG+
Sbjct: 61  GGGSNRGYGIGDSALGGSGRYEGGGEHNPRYRDGNDDRGVGYGNGGGYGGVGGHGDGYGS 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESS-------------NGY 180
           NG GGY  RYGPSLGGSGYG+GNGYDQ RDHGVGYGSKGG ESS             NGY
Sbjct: 121 NGGGGY--RYGPSLGGSGYGNGNGYDQRRDHGVGYGSKGGPESSNAYGDSRGYGARDNGY 180

Query: 181 GDSRGYGAHDNGYGSGGGASGGYGVGSHG-----VGYGNGGVHGGEYDNSKGSGEEGGYD 236
           GDSRGYGA DNGYGSGGG  GGYGVG HG      GYGNGGVHGGEYDNSKGSGEEGGYD
Sbjct: 181 GDSRGYGARDNGYGSGGGVGGGYGVGGHGGSSGSGGYGNGGVHGGEYDNSKGSGEEGGYD 240

BLAST of Clc10G01720 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 309.7 bits (792), Expect = 2.2e-80
Identity = 190/240 (79.17%), Postives = 196/240 (81.67%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFVGLGLASA RTLLDYDPRTRHY YDRPSPRVGYDP HRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
           GGSSSRGHGIGDSALGGSG YEGG  RD GYG RND+RGVGYGNGGGYGG  GHGDGYGN
Sbjct: 61  GGSSSRGHGIGDSALGGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGN 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSG-----NGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGA 180
           NG GGYG+RYGPSLGGSGYGSG     NGYD    H  GYG +      NGYGDS G+  
Sbjct: 121 NGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSH--GYGGR-----DNGYGDSHGHEG 180

Query: 181 HDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 236
            D+GYGSGGG SG         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN
Sbjct: 181 RDSGYGSGGGVSG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01720 vs. NCBI nr
Match: KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-72
Identity = 181/241 (75.10%), Postives = 189/241 (78.42%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFV LGLASA RTLLDYDPRT  Y YDRPSPRVGYDP H DESYD AY
Sbjct: 16  MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 75

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGN-GGGYGGAVGHGDGYG 120
           GGSSSRGHGIGDSALGGSG YEGG   D GYG R++DRGVGYGN GGGYGG  GHGDGYG
Sbjct: 76  GGSSSRGHGIGDSALGGSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYG 135

Query: 121 NNGDGGYGNRYGPSLGGSGY-----GSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYG 180
           NNG G YG+RYGPSLGGSGY     GSGNGYD   DH     S+G     N YGDS G+G
Sbjct: 136 NNGGGSYGDRYGPSLGGSGYGSGGKGSGNGYD---DH-----SRGNGARDNSYGDSHGHG 195

Query: 181 AHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 236
             D+GYGSGGG +G         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG
Sbjct: 196 GRDSGYGSGGGVTG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 238

BLAST of Clc10G01720 vs. NCBI nr
Match: XP_011652712.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 283.9 bits (725), Expect = 1.3e-72
Identity = 181/241 (75.10%), Postives = 189/241 (78.42%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFV LGLASA RTLLDYDPRT  Y YDRPSPRVGYDP H DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGN-GGGYGGAVGHGDGYG 120
           GGSSSRGHGIGDSALGGSG YEGG   D GYG R++DRGVGYGN GGGYGG  GHGDGYG
Sbjct: 61  GGSSSRGHGIGDSALGGSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYG 120

Query: 121 NNGDGGYGNRYGPSLGGSGY-----GSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYG 180
           NNG G YG+RYGPSLGGSGY     GSGNGYD   DH     S+G     N YGDS G+G
Sbjct: 121 NNGGGSYGDRYGPSLGGSGYGSGGKGSGNGYD---DH-----SRGNGARDNSYGDSHGHG 180

Query: 181 AHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 236
             D+GYGSGGG +G         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG
Sbjct: 181 GRDSGYGSGGGVTG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 223

BLAST of Clc10G01720 vs. ExPASy Swiss-Prot
Match: P10496 (Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 62.4 bits (150), Expect = 7.9e-09
Identity = 96/232 (41.38%), Postives = 111/232 (47.84%), Query Frame = 0

Query: 9   LSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAYGGSSSRGH 68
           L FL+ + LG+ SA R LL  D               GY   H        YGG++    
Sbjct: 10  LVFLVLLALGVCSARRALLTLD--------------AGYGLGH---GTGGGYGGAAGSYG 69

Query: 69  GIGDSALGGSGRYE-------------GGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHG 128
           G G    GG G Y              GG+G   GYGG   D+G GYG GGG GG  G G
Sbjct: 70  GGGGGGSGGGGGYAGEHGVVGYGGGSGGGQGGGVGYGG---DQGAGYGGGGGSGG--GGG 129

Query: 129 DGYGNNGD-GGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYG 188
             YG  G+ GGYG       GG G G+G GY  G +HG+GYG  GG+ +  G G + G G
Sbjct: 130 VAYGGGGERGGYG-------GGQGGGAGGGYGAGGEHGIGYGGGGGSGAGGGGGYNAG-G 189

Query: 189 AHDNGYGSGGGA-SGGYGVGSHGVGYGNG-GVHGGEYDNSKGSGEEGGYDGG 225
           A   GYG+GGGA  GG G G HG GYG G G  GG      G GE GG  GG
Sbjct: 190 AQGGGYGTGGGAGGGGGGGGDHGGGYGGGQGAGGGAGGGYGGGGEHGGGGGG 211

BLAST of Clc10G01720 vs. ExPASy Swiss-Prot
Match: P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.3e-06
Identity = 97/253 (38.34%), Postives = 108/253 (42.69%), Query Frame = 0

Query: 13  LFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAYGGSSSRGHGIGD 72
           +FV  G+ SAARTLL  +        DR +  VG        +    YGG    G G G 
Sbjct: 14  VFVCFGICSAARTLLTLE--------DRVNLHVG--------TVVGGYGGGGGSGGGGGG 73

Query: 73  SA--LGGSGRYE---GGRGRDSGYGGRNDDRGVGYGN---------GGGYGGAVGHGDGY 132
           +A  LGG G  E   GG G  +GYG      G G GN         GGGYGG  G G G 
Sbjct: 74  AAVELGGGGYGEGAGGGEGAGAGYGAAGGGHGGGGGNGGGGGGGADGGGYGGGAGKGGGE 133

Query: 133 GNNGDGGYGNRYGPSLG------------GSGYGSGNGYDQGRDHGVGYGSKGGAESSNG 192
           G  G G  G  YG   G            GSGYG G G   G  +G   G  GG     G
Sbjct: 134 GYGGGGANGGGYGGGGGSGGGGGGGAGGAGSGYGGGEGSGAGGGYGGANGGGGGGNGGGG 193

Query: 193 YGDS---RGYGAHDNGYGSGGGASGGYGVGS-----------HGVGYGNGGVHGGEYDNS 226
            G S    G GA   G G+G GA GGYG G+            G GYG GG  G  Y   
Sbjct: 194 GGGSGGAHGGGAAGGGEGAGQGAGGGYGGGAAGGGGRGSGGGGGGGYGGGGARGSGYGGG 250

BLAST of Clc10G01720 vs. ExPASy Swiss-Prot
Match: P0C5C7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=39946 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 84/227 (37.00%), Postives = 101/227 (44.49%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MA  + L L+ L+ + +G+ ++ARTLL Y P                             
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPG---------------------------- 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
                          GG G   GG G   GYGG     G GYG GGG GGA G G G G 
Sbjct: 61  ---------------GGGGGGGGGEGGGGGYGGSGYGSGSGYGEGGGSGGAAGGGYGRGG 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGAHDNGY 180
            G GG         GG G GSG+GY  G+  G GYG+        G G + GYG+   G 
Sbjct: 121 GGGGG---------GGEGGGSGSGYGSGQ--GSGYGA--------GVGGAGGYGSGGGGG 165

Query: 181 GSGGGASGGYGVGS-HGVGYGN--GGVHGGEYDNSKGSGEEGGYDGG 225
           G  GG +GGYG GS +G GYG+  GG HGG Y +  G G  GG  GG
Sbjct: 181 GGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGGGGGGQGGG 165

BLAST of Clc10G01720 vs. ExPASy Swiss-Prot
Match: A3C5A7 (Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=GRP0.9 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 84/227 (37.00%), Postives = 101/227 (44.49%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MA  + L L+ L+ + +G+ ++ARTLL Y P                             
Sbjct: 1   MATTKHLALAILVLLSIGMTTSARTLLGYGPG---------------------------- 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
                          GG G   GG G   GYGG     G GYG GGG GGA G G G G 
Sbjct: 61  ---------------GGGGGGGGGEGGGGGYGGSGYGSGSGYGEGGGSGGAAGGGYGRGG 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGAHDNGY 180
            G GG         GG G GSG+GY  G+  G GYG+        G G + GYG+   G 
Sbjct: 121 GGGGG---------GGEGGGSGSGYGSGQ--GSGYGA--------GVGGAGGYGSGGGGG 165

Query: 181 GSGGGASGGYGVGS-HGVGYGN--GGVHGGEYDNSKGSGEEGGYDGG 225
           G  GG +GGYG GS +G GYG+  GG HGG Y +  G G  GG  GG
Sbjct: 181 GGQGGGAGGYGQGSGYGSGYGSGAGGAHGGGYGSGGGGGGGGGQGGG 165

BLAST of Clc10G01720 vs. ExPASy Swiss-Prot
Match: Q9SIH2 (Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 95/245 (38.78%), Postives = 111/245 (45.31%), Query Frame = 0

Query: 9   LSFLLF-VGLGLASAARTLL---DYDPRTRHYDYDRP-----SPRVGYDPSHRDESYDNA 68
           L FL F +GLGL SA R LL   + +     Y  +          +G  P         +
Sbjct: 7   LFFLCFLIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGS 66

Query: 69  YGGSSSRGHGIGDSALGGSGRYEGGRGRDSG-------YGGRNDDRGVGYGNG--GGYGG 128
             G  + GHG G    GG G + GG G   G        GG  +  G GYG G  GG+GG
Sbjct: 67  GEGGGAGGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGEAGGHGG 126

Query: 129 AVGHGDGYGNNGDGG-YGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGD 188
             G G G G  G GG +G  YG   GG G G+G GY  G   G G G  GG     G G 
Sbjct: 127 GGGGGAGGGGGGGGGAHGGGYG---GGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGS 186

Query: 189 SRGYGAHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKN 235
             G GAH  GYG+GGGA  GYG G+   G+G GG  GG      GSG  GG  GGYA  +
Sbjct: 187 GEG-GAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGG------GSGGGGGGGGGYAAAS 241

BLAST of Clc10G01720 vs. ExPASy TrEMBL
Match: A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.1e-80
Identity = 190/240 (79.17%), Postives = 196/240 (81.67%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFVGLGLASA RTLLDYDPRTRHY YDRPSPRVGYDP HRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
           GGSSSRGHGIGDSALGGSG YEGG  RD GYG RND+RGVGYGNGGGYGG  GHGDGYGN
Sbjct: 61  GGSSSRGHGIGDSALGGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGN 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSG-----NGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGA 180
           NG GGYG+RYGPSLGGSGYGSG     NGYD    H  GYG +      NGYGDS G+  
Sbjct: 121 NGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSH--GYGGR-----DNGYGDSHGHEG 180

Query: 181 HDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 236
            D+GYGSGGG SG         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN
Sbjct: 181 RDSGYGSGGGVSG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01720 vs. ExPASy TrEMBL
Match: A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 309.7 bits (792), Expect = 1.1e-80
Identity = 190/240 (79.17%), Postives = 196/240 (81.67%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFVGLGLASA RTLLDYDPRTRHY YDRPSPRVGYDP HRDESYDNAY
Sbjct: 1   MAILRALCLAFLLFVGLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGNGGGYGGAVGHGDGYGN 120
           GGSSSRGHGIGDSALGGSG YEGG  RD GYG RND+RGVGYGNGGGYGG  GHGDGYGN
Sbjct: 61  GGSSSRGHGIGDSALGGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGN 120

Query: 121 NGDGGYGNRYGPSLGGSGYGSG-----NGYDQGRDHGVGYGSKGGAESSNGYGDSRGYGA 180
           NG GGYG+RYGPSLGGSGYGSG     NGYD    H  GYG +      NGYGDS G+  
Sbjct: 121 NGGGGYGDRYGPSLGGSGYGSGGKGSDNGYDDRHSH--GYGGR-----DNGYGDSHGHEG 180

Query: 181 HDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 236
            D+GYGSGGG SG         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN
Sbjct: 181 RDSGYGSGGGVSG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01720 vs. ExPASy TrEMBL
Match: A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 283.9 bits (725), Expect = 6.2e-73
Identity = 181/241 (75.10%), Postives = 189/241 (78.42%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAILR LCL+FLLFV LGLASA RTLLDYDPRT  Y YDRPSPRVGYDP H DESYD AY
Sbjct: 1   MAILRALCLAFLLFVRLGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVGYGN-GGGYGGAVGHGDGYG 120
           GGSSSRGHGIGDSALGGSG YEGG   D GYG R++DRGVGYGN GGGYGG  GHGDGYG
Sbjct: 61  GGSSSRGHGIGDSALGGSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYG 120

Query: 121 NNGDGGYGNRYGPSLGGSGY-----GSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYG 180
           NNG G YG+RYGPSLGGSGY     GSGNGYD   DH     S+G     N YGDS G+G
Sbjct: 121 NNGGGSYGDRYGPSLGGSGYGSGGKGSGNGYD---DH-----SRGNGARDNSYGDSHGHG 180

Query: 181 AHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 236
             D+GYGSGGG +G         GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG
Sbjct: 181 GRDSGYGSGGGVTG---------GYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKG 223

BLAST of Clc10G01720 vs. ExPASy TrEMBL
Match: A0A5A7UEU3 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001560 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.2e-68
Identity = 184/310 (59.35%), Postives = 194/310 (62.58%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAI R LC+SFLLFV LGLASAARTLLDYDPRTR YDYD P+PRVGYDPSHRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRD-------------------------------- 120
           GGSS+RG+G+GDSALGGSGRYEGG G D                                
Sbjct: 61  GGSSNRGYGVGDSALGGSGRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGGR 120

Query: 121 --------------------------------------SGYGGRNDDRGVGYGNGGGYGG 180
                                                 +GYGGRNDDRGVGYGNGGGYGG
Sbjct: 121 NDDRGAGYGGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYGG 180

Query: 181 AVGHGDGYGNNGDGGYGNRYGPSLGGSGY-----GSGNGYDQGRDHGVGYGSKGGAESSN 236
             GHGDGYGNN  GGYG+RY PSLGGSGY     GSGNGYD   DH  GYG        N
Sbjct: 181 VGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYD---DHSRGYGG-----HDN 240

BLAST of Clc10G01720 vs. ExPASy TrEMBL
Match: A0A1S3BM26 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)

HSP 1 Score: 269.6 bits (688), Expect = 1.2e-68
Identity = 184/310 (59.35%), Postives = 194/310 (62.58%), Query Frame = 0

Query: 1   MAILRGLCLSFLLFVGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPSHRDESYDNAY 60
           MAI R LC+SFLLFV LGLASAARTLLDYDPRTR YDYD P+PRVGYDPSHRD+SYDNAY
Sbjct: 1   MAISRALCISFLLFVCLGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAY 60

Query: 61  GGSSSRGHGIGDSALGGSGRYEGGRGRD-------------------------------- 120
           GGSS+RG+G+GDSALGGSGRYEGG G D                                
Sbjct: 61  GGSSNRGYGVGDSALGGSGRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGGR 120

Query: 121 --------------------------------------SGYGGRNDDRGVGYGNGGGYGG 180
                                                 +GYGGRNDDRGVGYGNGGGYGG
Sbjct: 121 NDDRGAGYGGRNDDRGAGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYGG 180

Query: 181 AVGHGDGYGNNGDGGYGNRYGPSLGGSGY-----GSGNGYDQGRDHGVGYGSKGGAESSN 236
             GHGDGYGNN  GGYG+RY PSLGGSGY     GSGNGYD   DH  GYG        N
Sbjct: 181 VGGHGDGYGNNVGGGYGDRYSPSLGGSGYGNGGKGSGNGYD---DHSRGYGG-----HDN 240

BLAST of Clc10G01720 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 48.1 bits (113), Expect = 1.1e-05
Identity = 95/245 (38.78%), Postives = 111/245 (45.31%), Query Frame = 0

Query: 9   LSFLLF-VGLGLASAARTLL---DYDPRTRHYDYDRP-----SPRVGYDPSHRDESYDNA 68
           L FL F +GLGL SA R LL   + +     Y  +          +G  P         +
Sbjct: 7   LFFLCFLIGLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGS 66

Query: 69  YGGSSSRGHGIGDSALGGSGRYEGGRGRDSG-------YGGRNDDRGVGYGNG--GGYGG 128
             G  + GHG G    GG G + GG G   G        GG  +  G GYG G  GG+GG
Sbjct: 67  GEGGGAGGHGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGGGSGEGGGAGYGGGEAGGHGG 126

Query: 129 AVGHGDGYGNNGDGG-YGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGD 188
             G G G G  G GG +G  YG   GG G G+G GY  G   G G G  GG     G G 
Sbjct: 127 GGGGGAGGGGGGGGGAHGGGYG---GGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGS 186

Query: 189 SRGYGAHDNGYGSGGGASGGYGVGSHGVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKN 235
             G GAH  GYG+GGGA  GYG G+   G+G GG  GG      GSG  GG  GGYA  +
Sbjct: 187 GEG-GAHGGGYGAGGGAGEGYGGGAGAGGHGGGGGGGG------GSGGGGGGGGGYAAAS 241

BLAST of Clc10G01720 vs. TAIR 10
Match: AT5G46730.1 (glycine-rich protein )

HSP 1 Score: 46.6 bits (109), Expect = 3.2e-05
Identity = 76/174 (43.68%), Postives = 85/174 (48.85%), Query Frame = 0

Query: 58  NAYGGSSSRGHGIGDSALGGSGRYEGGRGRDSGYGGRNDDRGVG---YGNGGGYGGAVGH 117
           +A GG    G G G SA G  G +  G G  +G GG     G G   YG GGG+GG  G 
Sbjct: 119 HAGGGGGGSGGG-GGSAYGAGGEHASGYGNGAGEGGGAGASGYGGGAYGGGGGHGGGGGG 178

Query: 118 GDGYGNNGDGGYGNRYGPSLGGSGYGSGNGYDQGRDHGVGYGSKGGAESSNGYGDSRGYG 177
           G   G +G  GYG       GG G G+G G   G   G G G  GG+     YG   G G
Sbjct: 179 GSAGGAHGGSGYG-------GGEGGGAGGGGSHGGAGGYGGGGGGGSGGGGAYG---GGG 238

Query: 178 AHDNGYGSGGGASGGYGVGSHGVGYGNGG----VHGGEYDNSKGSGEEGGYDGG 225
           AH  GYGSGGG  GGYG G+ G GYG GG      GG Y    G G  GG+ GG
Sbjct: 239 AHGGGYGSGGGEGGGYGGGAAG-GYGGGGGGGEGGGGSYGGEHGGGSGGGHGGG 280

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903421.14.1e-8780.57glycine-rich cell wall structural protein 1.8-like [Benincasa hispida][more]
XP_038903641.11.1e-8477.87glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
XP_008449165.12.2e-8079.17PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA... [more]
KAE8650024.11.3e-7275.10hypothetical protein Csa_011560 [Cucumis sativus][more]
XP_011652712.11.3e-7275.10glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
P104967.9e-0941.38Glycine-rich cell wall structural protein 1.8 OS=Phaseolus vulgaris OX=3885 PE=2... [more]
P104951.3e-0638.34Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2... [more]
P0C5C72.2e-0637.00Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. indica OX=399... [more]
A3C5A72.2e-0637.00Glycine-rich cell wall structural protein 2 OS=Oryza sativa subsp. japonica OX=3... [more]
Q9SIH21.5e-0438.78Glycine-rich protein DOT1 OS=Arabidopsis thaliana OX=3702 GN=DOT1 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5A7UHU21.1e-8079.17Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BMC41.1e-8079.17glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0L1V36.2e-7375.10Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1[more]
A0A5A7UEU31.2e-6859.35Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BM261.2e-6859.35glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT2G36120.11.1e-0538.78Glycine-rich protein family [more]
AT5G46730.13.2e-0543.68glycine-rich protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01228EGGSHELLcoord: 106..121
score: 42.97
coord: 134..144
score: 45.45
coord: 4..20
score: 35.29
coord: 177..195
score: 30.26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 141..187
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 200..235
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..55
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 33..98

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G01720.1Clc10G01720.1mRNA