Clc10G01700 (gene) Watermelon (cordophanus) v2

Overview
NameClc10G01700
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Descriptionglycine-rich cell wall structural protein 1.8-like
LocationClcChr10: 1592484 .. 1593850 (+)
RNA-Seq ExpressionClc10G01700
SyntenyClc10G01700
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCACCAGCTCTCCACCCAACAGAACCTTTTCTCCACCTTAAACAGGATCCTTAACATCAATCCCAACTCCAAGAAAAATACTCTTCCAAGTAACATCGCAAGAGCCACTCTTTCGTGTACCTGGTTGGAGAGAAATAATAGAACTTTCCATGGCAAAGATAAATCACAATGGAAGATATCATCAGCCTTGCCTCCTTGTGGTATGCTAAATCCAAAATCTTTTGAAATTACTCTACTTCTTGTATTGCTTTAAATTGGGAGGTCTTCCTATAATTGTAACACCTCCCTTTCGAGCTTTTCTCTAGCTCGCTTTTGTACTCAATCTTTTAACGTCAATGCATTTTGGTATTAGGATGTGATGAGGGTGCTAAAGGGTTGTCAACCTAGTTGAGTTGCCTCGGTACACCTACTAACCCTCTTGTCGTGTGAATATTTTCAAAAGAATAATTTAAAAAAAAATGAAAAAGTTATCAAAAAGAATCTTGCATAATGATACAAATGGAAGATGGAATTAAATAATAATCTAATTTTTTAGCCAAATGACATAGGCAAAAGCCACATTATAGTGCTTGCCGCTTGAACATCGGTTGAGGTGTATATCCAAATTAATCATCTTTGTTGCACGTGCACCCTCTTTACCACTAAGCTACCACACTATTGAGAAGCTATGGATCCTCGTTTCCTTTTCTATATAAGGAGATGATGGATGCATTCTAGGCATTCCTATCCATGGCTATCCCCAGGGTTGTGTGCTTTGGCTTTCTTTTCCTTGCAGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGACTATGATCCTCGTACACGTCACTATGATTATGATCGTCCTAGTCCTAGAGTAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGTTCCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATACGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATTCTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGATATGATGGTGGGTATGCTGTTAAAAATTCCATCTCAAAGGAGAATTGA

mRNA sequence

ATGCACCAGCTCTCCACCCAACAGAACCTTTTCTCCACCTTAAACAGGATCCTTAACATCAATCCCAACTCCAAGAAAAATACTCTTCCAAGTAACATCGCAAGAGCCACTCTTTCGTGTACCTGGTTGGAGAGAAATAATAGAACTTTCCATGGCAAAGATAAATCACAATGGAAGATATCATCAGCCTTGCCTCCTTGTGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGACTATGATCCTCGTACACGTCACTATGATTATGATCGTCCTAGTCCTAGAGTAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGTTCCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATACGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATTCTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGATATGATGGTGGGTATGCTGTTAAAAATTCCATCTCAAAGGAGAATTGA

Coding sequence (CDS)

ATGCACCAGCTCTCCACCCAACAGAACCTTTTCTCCACCTTAAACAGGATCCTTAACATCAATCCCAACTCCAAGAAAAATACTCTTCCAAGTAACATCGCAAGAGCCACTCTTTCGTGTACCTGGTTGGAGAGAAATAATAGAACTTTCCATGGCAAAGATAAATCACAATGGAAGATATCATCAGCCTTGCCTCCTTGTGGGTTAGGTTTAGCTTCGGCTGCCAGAACCCTTCTTGACTATGATCCTCGTACACGTCACTATGATTATGATCGTCCTAGTCCTAGAGTAGGTTACGATCCTGGTCATCGTGATGAATCCTATGATAATGCATATGGTGGAAGCTCTAGTAGAGGACATGGAATTGGAGACTCGTCTCTTGGAGGTTCCGGACGATATGAAGGTGGTGGAGGACGTGATTCTGGATATGGAGGTCGAAATGATGATCGTGGGGTTGGATACGGTAATGGTGGTGGGTATGGAGGTGTAGGAGGACATGGTGATGGTTATGGTAGCAATTCTGGTGGAGGCTATGGAAATCGCTATGGCCCTTCCCTTGGAGGTAGAGGAAGTGGCAATGGCTATGGAGATTCTCGTGGATATGGAGCACGTGACAATGGGTATGGGAGTGGTGGAGGAGTTGGTAGTGGCTATGGTGGTGGTAGTGGAAGTGTTGGTTATGGCAATGGTGGTGTTCATGGAGGAGAATATGATAATAGCAAAGGAAGTGGAGAAGAAGGAGGATATGATGGTGGGTATGCTGTTAAAAATTCCATCTCAAAGGAGAATTGA

Protein sequence

MHQLSTQQNLFSTLNRILNINPNSKKNTLPSNIARATLSCTWLERNNRTFHGKDKSQWKISSALPPCGLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGARDNGYGSGGGVGSGYGGGSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN
Homology
BLAST of Clc10G01700 vs. NCBI nr
Match: XP_038903414.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 278.1 bits (710), Expect = 7.9e-71
Identity = 174/244 (71.31%), Postives = 181/244 (74.18%), Query Frame = 0

Query: 68  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSL 127
           G GLAS ARTLLDYDPRTR Y+YDRP+PRVGYDPGHRDESYDNAYGGSS+RGHGIGDS+ 
Sbjct: 16  GFGLASTARTLLDYDPRTRQYNYDRPTPRVGYDPGHRDESYDNAYGGSSNRGHGIGDSTF 75

Query: 128 GG-SGRYEGGGGRDSGYGGRNDD------------------------------------- 187
           GG SGRYEGGGGRDSGYG RNDD                                     
Sbjct: 76  GGYSGRYEGGGGRDSGYGSRNDDRGTGYGNGGGYKDVVGHDDGYGSNGGRGRDYGYGGQN 135

Query: 188 --RGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL--------GGRGSGNGYGDSR 247
             RGVGYGNGGGYG VG HGDGYGSN GGGYGN YGPSL        GGRGSGNGYGDS 
Sbjct: 136 GNRGVGYGNGGGYGSVGEHGDGYGSNGGGGYGNGYGPSLRGSTYGNGGGRGSGNGYGDSH 195

Query: 248 GYGARDNGYGSGGGVGSGYGGGSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSI 264
           GYGARDNGYGSGGG G GYGGG+GS GYGNGGVH GEYDN+KGSGEEGGYDG YA+KNSI
Sbjct: 196 GYGARDNGYGSGGGAGGGYGGGNGSAGYGNGGVHRGEYDNNKGSGEEGGYDGRYALKNSI 255

BLAST of Clc10G01700 vs. NCBI nr
Match: XP_008449165.1 (PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KAA0053039.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa] >TYK11494.1 glycine-rich cell wall structural protein 1.8-like [Cucumis melo var. makuwa])

HSP 1 Score: 270.4 bits (690), Expect = 1.6e-68
Identity = 171/209 (81.82%), Postives = 176/209 (84.21%), Query Frame = 0

Query: 68  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSL 127
           GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+L
Sbjct: 16  GLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSAL 75

Query: 128 GGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 187
           GGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG+N GGGYG+RYGPSL 
Sbjct: 76  GGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNNGGGGYGDRYGPSLG 135

Query: 188 ------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHG 247
                 GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHG
Sbjct: 136 GSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSGGGVSGGYGNGGVHG 195

Query: 248 GEYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           GEYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 196 GEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01700 vs. NCBI nr
Match: XP_038903641.1 (glycine-rich cell wall structural protein 2-like [Benincasa hispida])

HSP 1 Score: 263.1 bits (671), Expect = 2.6e-66
Identity = 168/237 (70.89%), Postives = 175/237 (73.84%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASAAR LLDYDPRTRHYDYDRPSPRVGYDP HRD SYDN+YGG S+RG+GIGDS+LG
Sbjct: 17  LGLASAARILLDYDPRTRHYDYDRPSPRVGYDPSHRDGSYDNSYGGGSNRGYGIGDSALG 76

Query: 129 GSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSLGG 188
           GSGRYEGGG  +  Y   NDDRGVGYGNGGGYGGVGGHGDGYGSN GGGY  RYGPSLGG
Sbjct: 77  GSGRYEGGGEHNPRYRDGNDDRGVGYGNGGGYGGVGGHGDGYGSNGGGGY--RYGPSLGG 136

Query: 189 RGSG-------------------------------------NGYGDSRGYGARDNGYGSG 248
            G G                                     NGYGDSRGYGARDNGYGSG
Sbjct: 137 SGYGNGNGYDQRRDHGVGYGSKGGPESSNAYGDSRGYGARDNGYGDSRGYGARDNGYGSG 196

Query: 249 GGVGSGY-----GGGSGSVGYGNGGVHGGEYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           GGVG GY     GG SGS GYGNGGVHGGEYDNSKGSGEEGGYDGGYA+KNSIS +N
Sbjct: 197 GGVGGGYGVGGHGGSSGSGGYGNGGVHGGEYDNSKGSGEEGGYDGGYALKNSISNKN 251

BLAST of Clc10G01700 vs. NCBI nr
Match: KAE8650024.1 (hypothetical protein Csa_011560 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-62
Identity = 164/208 (78.85%), Postives = 171/208 (82.21%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LG
Sbjct: 32  LGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAYGGSSSRGHGIGDSALG 91

Query: 129 GSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 188
           GSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHGDGYG+N GG YG+RYGPSL 
Sbjct: 92  GSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGNNGGGSYGDRYGPSLG 151

Query: 189 ------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGG 248
                 GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGG
Sbjct: 152 GSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSGGGVTGGYGNGGVHGG 211

Query: 249 EYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           EYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 212 EYDNSKGSGEEGGYDGGYAVKNSISKGN 238

BLAST of Clc10G01700 vs. NCBI nr
Match: XP_011652712.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.1e-62
Identity = 164/208 (78.85%), Postives = 171/208 (82.21%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LG
Sbjct: 17  LGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAYGGSSSRGHGIGDSALG 76

Query: 129 GSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 188
           GSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHGDGYG+N GG YG+RYGPSL 
Sbjct: 77  GSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGNNGGGSYGDRYGPSLG 136

Query: 189 ------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGG 248
                 GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGG
Sbjct: 137 GSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSGGGVTGGYGNGGVHGG 196

Query: 249 EYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           EYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 197 EYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01700 vs. ExPASy Swiss-Prot
Match: P10495 (Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 6.0e-05
Identity = 72/155 (46.45%), Postives = 80/155 (51.61%), Query Frame = 0

Query: 113 GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVG-GHGDGYG 172
           GG+   G+G G    GG G Y GGG    GYGG     G G G GGG GG G G+G G G
Sbjct: 100 GGADGGGYGGGAGKGGGEG-YGGGGANGGGYGGGG---GSGGGGGGGAGGAGSGYGGGEG 159

Query: 173 SNSGGGYGNRYGPSLGGR--GSGNGYGDSRGYGARDNGYGSGGGVGSGYGGGS------- 232
           S +GGGYG   G   GG   G G G G + G GA   G G+G G G GYGGG+       
Sbjct: 160 SGAGGGYGGANGGGGGGNGGGGGGGSGGAHGGGAAGGGEGAGQGAGGGYGGGAAGGGGRG 219

Query: 233 ----GSVGYGNGGVHGGEYDNSKGSGEEGGYDGGY 254
               G  GYG GG  G  Y    GSGE GG+ GGY
Sbjct: 220 SGGGGGGGYGGGGARGSGYGGGGGSGEGGGHGGGY 250

BLAST of Clc10G01700 vs. ExPASy Swiss-Prot
Match: P35527 (Keratin, type I cytoskeletal 9 OS=Homo sapiens OX=9606 GN=KRT9 PE=1 SV=3)

HSP 1 Score: 47.4 bits (111), Expect = 3.0e-04
Identity = 77/152 (50.66%), Postives = 81/152 (53.29%), Query Frame = 0

Query: 113 GGSSSRGHGIGDSSLGGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGS 172
           GG    G   G  S GGSG   GGGG   GYGG +  RG   G+GG YGG    G G G 
Sbjct: 476 GGRGGSGGSYGRGSRGGSGGSYGGGGSGGGYGGGSGSRG---GSGGSYGG----GSGSGG 535

Query: 173 NSGGGYGNRYGPSLGGRGSGNGYGDSRGYGAR-DNGYGSGGGVGSGYGGGSGSVGYGNGG 232
            SGGGYG   G S GG   G+G G S G G     G GSGGG G GYGGGSGS G G+GG
Sbjct: 536 GSGGGYG---GGSGGGHSGGSGGGHSGGSGGNYGGGSGSGGGSGGGYGGGSGSRG-GSGG 595

Query: 233 VH------GGEYDNSKGSGEE-----GGYDGG 253
            H      GGE   S G GEE     GGY GG
Sbjct: 596 SHGGGSGFGGESGGSYGGGEEASGSGGGYGGG 616

BLAST of Clc10G01700 vs. ExPASy TrEMBL
Match: A0A5A7UHU2 (Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001580 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.9e-69
Identity = 171/209 (81.82%), Postives = 176/209 (84.21%), Query Frame = 0

Query: 68  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSL 127
           GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+L
Sbjct: 16  GLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSAL 75

Query: 128 GGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 187
           GGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG+N GGGYG+RYGPSL 
Sbjct: 76  GGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNNGGGGYGDRYGPSLG 135

Query: 188 ------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHG 247
                 GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHG
Sbjct: 136 GSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSGGGVSGGYGNGGVHG 195

Query: 248 GEYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           GEYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 196 GEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01700 vs. ExPASy TrEMBL
Match: A0A1S3BMC4 (glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LOC103491115 PE=4 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 7.9e-69
Identity = 171/209 (81.82%), Postives = 176/209 (84.21%), Query Frame = 0

Query: 68  GLGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSL 127
           GLGLASA RTLLDYDPRTRHY YDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDS+L
Sbjct: 16  GLGLASATRTLLDYDPRTRHYGYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSAL 75

Query: 128 GGSGRYEGGGGRDSGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 187
           GGSG YEGGG RD GYG RND+RGVGYGNGGGYGGVGGHGDGYG+N GGGYG+RYGPSL 
Sbjct: 76  GGSG-YEGGGRRDYGYGDRNDNRGVGYGNGGGYGGVGGHGDGYGNNGGGGYGDRYGPSLG 135

Query: 188 ------GGRGSGNGYGD--SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHG 247
                 GG+GS NGY D  S GYG RDNGYG      G  SGYG G G S GYGNGGVHG
Sbjct: 136 GSGYGSGGKGSDNGYDDRHSHGYGGRDNGYGDSHGHEGRDSGYGSGGGVSGGYGNGGVHG 195

Query: 248 GEYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           GEYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 196 GEYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01700 vs. ExPASy TrEMBL
Match: A0A0A0L1V3 (Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 2.5e-62
Identity = 164/208 (78.85%), Postives = 171/208 (82.21%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASA RTLLDYDPRT  Y YDRPSPRVGYDPGH DESYD AYGGSSSRGHGIGDS+LG
Sbjct: 17  LGLASATRTLLDYDPRTLQYGYDRPSPRVGYDPGHGDESYDKAYGGSSSRGHGIGDSALG 76

Query: 129 GSGRYEGGGGRDSGYGGRNDDRGVGYGN-GGGYGGVGGHGDGYGSNSGGGYGNRYGPSL- 188
           GSG YEGGG  D GYG R++DRGVGYGN GGGYGGVGGHGDGYG+N GG YG+RYGPSL 
Sbjct: 77  GSG-YEGGGRHDYGYGDRHNDRGVGYGNYGGGYGGVGGHGDGYGNNGGGSYGDRYGPSLG 136

Query: 189 ------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVGYGNGGVHGG 248
                 GG+GSGNGY D SRG GARDN YG     GG  SGYG G G + GYGNGGVHGG
Sbjct: 137 GSGYGSGGKGSGNGYDDHSRGNGARDNSYGDSHGHGGRDSGYGSGGGVTGGYGNGGVHGG 196

Query: 249 EYDNSKGSGEEGGYDGGYAVKNSISKEN 264
           EYDNSKGSGEEGGYDGGYAVKNSISK N
Sbjct: 197 EYDNSKGSGEEGGYDGGYAVKNSISKGN 223

BLAST of Clc10G01700 vs. ExPASy TrEMBL
Match: A0A5A7UEU3 (Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001560 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-60
Identity = 167/277 (60.29%), Postives = 177/277 (63.90%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASAARTLLDYDPRTR YDYD P+PRVGYDP HRD+SYDNAYGGSS+RG+G+GDS+LG
Sbjct: 17  LGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAYGGSSNRGYGVGDSALG 76

Query: 129 GSGRYEGGGGRD------------------------------------------------ 188
           GSGRYEGGGG D                                                
Sbjct: 77  GSGRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGGRNDDRGAGYGGRNDDRG 136

Query: 189 ----------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGY 248
                                 +GYGGRNDDRGVGYGNGGGYGGVGGHGDGYG+N GGGY
Sbjct: 137 AGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGNNVGGGY 196

Query: 249 GNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVG 264
           G+RY PSL       GG+GSGNGY D SRGYG  DNGYG     GG  SGYG G G S G
Sbjct: 197 GDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDNGYGDSHGHGGRDSGYGSGGGVSGG 256

BLAST of Clc10G01700 vs. ExPASy TrEMBL
Match: A0A1S3BM26 (glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LOC103491114 PE=4 SV=1)

HSP 1 Score: 240.7 bits (613), Expect = 6.7e-60
Identity = 167/277 (60.29%), Postives = 177/277 (63.90%), Query Frame = 0

Query: 69  LGLASAARTLLDYDPRTRHYDYDRPSPRVGYDPGHRDESYDNAYGGSSSRGHGIGDSSLG 128
           LGLASAARTLLDYDPRTR YDYD P+PRVGYDP HRD+SYDNAYGGSS+RG+G+GDS+LG
Sbjct: 17  LGLASAARTLLDYDPRTRRYDYDHPTPRVGYDPSHRDQSYDNAYGGSSNRGYGVGDSALG 76

Query: 129 GSGRYEGGGGRD------------------------------------------------ 188
           GSGRYEGGGG D                                                
Sbjct: 77  GSGRYEGGGGHDYGYGGRNDDRGVGYGGRNDDHGAGYGAGYGGRNDDRGAGYGGRNDDRG 136

Query: 189 ----------------------SGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGSNSGGGY 248
                                 +GYGGRNDDRGVGYGNGGGYGGVGGHGDGYG+N GGGY
Sbjct: 137 AGYGRRNDDHGAGYGGRNDDRGAGYGGRNDDRGVGYGNGGGYGGVGGHGDGYGNNVGGGY 196

Query: 249 GNRYGPSL-------GGRGSGNGYGD-SRGYGARDNGYGSG---GGVGSGYGGGSG-SVG 264
           G+RY PSL       GG+GSGNGY D SRGYG  DNGYG     GG  SGYG G G S G
Sbjct: 197 GDRYSPSLGGSGYGNGGKGSGNGYDDHSRGYGGHDNGYGDSHGHGGRDSGYGSGGGVSGG 256

BLAST of Clc10G01700 vs. TAIR 10
Match: AT2G36120.1 (Glycine-rich protein family )

HSP 1 Score: 42.7 bits (99), Expect = 5.2e-04
Identity = 83/202 (41.09%), Postives = 94/202 (46.53%), Query Frame = 0

Query: 68  GLGLASAARTLL---DYDPRTRHYDYDRP-----SPRVGYDPGHRDESYDNAYGGSSSRG 127
           GLGL SA R LL   + +     Y  +          +G  PG        +  G  + G
Sbjct: 15  GLGLCSARRALLSSSESEAEVAAYGVNSGLSAGLGVGIGGGPGGGSGYGGGSGEGGGAGG 74

Query: 128 HGIGDSSLGGSGRY------EGGGGRDSGYGGRNDDRGVGYGNGGGYGG--VGGHGDGYG 187
           HG G    GG G +       GGGG   GYGG     G G G G GYGG   GGHG G G
Sbjct: 75  HGEGHIGGGGGGGHGGGAGGGGGGGPGGGYGG-----GSGEGGGAGYGGGEAGGHGGGGG 134

Query: 188 SNSGGGYGNRYGPSLGGRGSGNGYGDSRGYGARD-NGYGSGGGVGSGYGGGSGSVGYGNG 247
             +GGG G   G   GG G G G G   GYG     G+G GGG G+G GGG GS   G G
Sbjct: 135 GGAGGGGGGGGGAHGGGYGGGQGAGAGGGYGGGGAGGHGGGGGGGNGGGGGGGS---GEG 194

Query: 248 GVHGGEYDNSKGSGEEGGYDGG 253
           G HGG Y    G+GE  GY GG
Sbjct: 195 GAHGGGYGAGGGAGE--GYGGG 206

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_038903414.17.9e-7171.31glycine-rich cell wall structural protein 1.8-like [Benincasa hispida][more]
XP_008449165.11.6e-6881.82PREDICTED: glycine-rich cell wall structural protein 1.8-like [Cucumis melo] >KA... [more]
XP_038903641.12.6e-6670.89glycine-rich cell wall structural protein 2-like [Benincasa hispida][more]
KAE8650024.15.1e-6278.85hypothetical protein Csa_011560 [Cucumis sativus][more]
XP_011652712.15.1e-6278.85glycine-rich cell wall structural protein 2 [Cucumis sativus][more]
Match NameE-valueIdentityDescription
P104956.0e-0546.45Glycine-rich cell wall structural protein 1.0 OS=Phaseolus vulgaris OX=3885 PE=2... [more]
P355273.0e-0450.66Keratin, type I cytoskeletal 9 OS=Homo sapiens OX=9606 GN=KRT9 PE=1 SV=3[more]
Match NameE-valueIdentityDescription
A0A5A7UHU27.9e-6981.82Glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BMC47.9e-6981.82glycine-rich cell wall structural protein 1.8-like OS=Cucumis melo OX=3656 GN=LO... [more]
A0A0A0L1V32.5e-6278.85Glycine-rich protein-1 OS=Cucumis sativus OX=3659 GN=Csa_3G011070 PE=4 SV=1[more]
A0A5A7UEU36.7e-6060.29Glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo var. makuwa O... [more]
A0A1S3BM266.7e-6060.29glycine-rich cell wall structural protein 1.0-like OS=Cucumis melo OX=3656 GN=LO... [more]
Match NameE-valueIdentityDescription
AT2G36120.15.2e-0441.09Glycine-rich protein family [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 172..263
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..107
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 85..150

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc10G01700.1Clc10G01700.1mRNA