
Clc10G01350 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGTAAGTAGTTTCCTTATCTCTATTTAGCAAATGAAGATTGATTTTTATATGCTTCAACTATTTCGAATTTGTGTATTGCTATGAGTCTTTCGTTTTTTGTTAGCCCTTTTGAGGTTTTGAATTGATGGGTTGTCGATGGATTGTTATATATCTTACGATTGAGATTGTTGGTTCAAATTATTTTCTGAAGAATTTGAACTTATTTGTCGAAAGGTTCAAATAATTTTCATTTCCTGGGTTTTTCATGGCTGCTAGATTGGTTGACTTTTGATAAATTGGAATCTTACTTGCCTTGTTGTGGTGGAGAATATGATTCTTTTGGGCCATTTTGTAGAATTCTTTGACTTGGGTCATCTGAAACTCGAATCTAGTGCTAATTTTGGTCTTCTTTTTTTAAAATAAAATTAATAATAGTAAACGTTGTTGATTCCATAGTAGTGGACCAGTTGAGCTTTTATGCTTCTGATTTCCATGGCTGTTTCTGAGATCTTATCATATTTGCTATTTTACCTGTCCTGTTTTACTTTGAAACTTTGATGGAGGTAAGGAAATTACCATCTGGGTCAATGTTTTCTTTTACCTTTTGAGATTTGTTAAACATTTAGTTGGATATTTTGGGTAGTTTTGATGTCAATAAAGTTTGTTCATATGATGCAGGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGTAAGCTGCAGAATTGATCTTCTTATACAATTTTGTTCAGTTTAATGCCCATCTGATCAATTATATATCTAGTTGATTTATTGCATATATTGACAATATATGGTCGAAGGCTGAAAGAGGCCAGTGTTTGATGGGTCTCAATTTCGGAAGTCGTTTATTCATAGATTCCTTTTGGGAAGTCTGTTCATGATTTTAGAGATGAGATTTATAACTGTACAAGAAGCCTGATATGGTAAGCATCATAAAGTAGAGATGTCCCTTATACTAAAGAGCAAAGGCAAACTTATTGCACAAAATCATGAGTTCCACCTGAAGTAACCATTTCTTAGCCCCCCCTCCCCCAATTATATGTACAAATGACGACACGGTCTCGAATTATACTGGTTACTGAATCAGAACAGATAGTTGTGATTTTGTAAATATGAAAAATGTGAAAGATTCAAATTTTATTGTCCCTCCCTTAAGCTAATGAAAACTTTGGTTGAATATAACATTTATGATAGATGAAATTTGAAAGCCATGAAGCTGATTTTGGTTGAACTAATTGTTAGAGAATCATGATGTTGTTGGTTTCCTTATTGATGTACCAAACCTATCAGTGAAAGTTGTAGGTTGTGATATATCTTGAGATCTGATTTTGAACTCCTAAACCACTAGGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG ATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG ATGGTGGGCATTTTTTCAAGGTTTTCTTCTAGCAAAACAGGGCATCGACGAGCGCAAAGTGCCCTTGATGGGAGAGAAGGACTGCCTCCAAATCCAGAGAGCACTGGTGTCAGTGCTACCTCTGCTGCTGCTTCTCATGGAATTGAAGTAGCAGTGGAGTTCAAGCCTGTTGAACATCCAATTGAGCCTCTCGACAACGATAGGCCAATTCAGTGTCCATTGCCCGAACCGTCTATTCTGAATGATGGAAGAATATGGAAGGAACGTGTATCGAGTATACGAAAACTGCCAGATTTGCCTGTTATGAAAGAAGCTGAAGTCGGTGAGACAAGACCGCGGGCAACACGCACAATCTTACCATCTATCAGTGCTCCTGAACATAACATCCTAAACCTACTCGAGGAATCCGGGATATAG MVGIFSRFSSSKTGHRRAQSALDGREGLPPNPESTGVSATSAAASHGIEVAVEFKPVEHPIEPLDNDRPIQCPLPEPSILNDGRIWKERVSSIRKLPDLPVMKEAEVGETRPRATRTILPSISAPEHNILNLLEESGI Homology
BLAST of Clc10G01350 vs. NCBI nr
Match: XP_038891759.1 (uncharacterized protein LOC120081150 isoform X1 [Benincasa hispida]) HSP 1 Score: 273.1 bits (697), Expect = 1.3e-69 Identity = 136/138 (98.55%), Postives = 138/138 (100.00%), Query Frame = 0
BLAST of Clc10G01350 vs. NCBI nr
Match: XP_008448622.1 (PREDICTED: uncharacterized protein LOC103490741 isoform X2 [Cucumis melo]) HSP 1 Score: 269.6 bits (688), Expect = 1.5e-68 Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Clc10G01350 vs. NCBI nr
Match: XP_004146112.1 (uncharacterized protein LOC101208810 isoform X1 [Cucumis sativus]) HSP 1 Score: 268.1 bits (684), Expect = 4.3e-68 Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0
BLAST of Clc10G01350 vs. NCBI nr
Match: KAG7015778.1 (hypothetical protein SDJN02_23416 [Cucurbita argyrosperma subsp. argyrosperma]) HSP 1 Score: 255.8 bits (652), Expect = 2.2e-64 Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0
BLAST of Clc10G01350 vs. NCBI nr
Match: XP_022965310.1 (uncharacterized protein LOC111465213 isoform X1 [Cucurbita maxima] >XP_023552125.1 uncharacterized protein LOC111809886 isoform X1 [Cucurbita pepo subsp. pepo]) HSP 1 Score: 255.4 bits (651), Expect = 2.9e-64 Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0
BLAST of Clc10G01350 vs. ExPASy TrEMBL
Match: A0A1S3BL03 (uncharacterized protein LOC103490741 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490741 PE=4 SV=1) HSP 1 Score: 269.6 bits (688), Expect = 7.1e-69 Identity = 134/138 (97.10%), Postives = 137/138 (99.28%), Query Frame = 0
BLAST of Clc10G01350 vs. ExPASy TrEMBL
Match: A0A0A0L159 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006710 PE=4 SV=1) HSP 1 Score: 268.1 bits (684), Expect = 2.1e-68 Identity = 133/138 (96.38%), Postives = 136/138 (98.55%), Query Frame = 0
BLAST of Clc10G01350 vs. ExPASy TrEMBL
Match: A0A6J1HNC4 (uncharacterized protein LOC111465213 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111465213 PE=4 SV=1) HSP 1 Score: 255.4 bits (651), Expect = 1.4e-64 Identity = 128/138 (92.75%), Postives = 134/138 (97.10%), Query Frame = 0
BLAST of Clc10G01350 vs. ExPASy TrEMBL
Match: A0A6J1E782 (uncharacterized protein LOC111431237 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111431237 PE=4 SV=1) HSP 1 Score: 254.2 bits (648), Expect = 3.1e-64 Identity = 127/138 (92.03%), Postives = 134/138 (97.10%), Query Frame = 0
BLAST of Clc10G01350 vs. ExPASy TrEMBL
Match: A0A6J1FXM9 (uncharacterized protein LOC111448107 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111448107 PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 5.3e-64 Identity = 126/139 (90.65%), Postives = 134/139 (96.40%), Query Frame = 0
BLAST of Clc10G01350 vs. TAIR 10
Match: AT1G31940.1 (unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G35585.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 171.8 bits (434), Expect = 3.9e-43 Identity = 90/146 (61.64%), Postives = 109/146 (74.66%), Query Frame = 0
BLAST of Clc10G01350 vs. TAIR 10
Match: AT2G35585.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G31940.1); Has 67 Blast hits to 67 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 161.8 bits (408), Expect = 4.0e-40 Identity = 86/149 (57.72%), Postives = 107/149 (71.81%), Query Frame = 0
BLAST of Clc10G01350 vs. TAIR 10
Match: AT2G01913.1 (unknown protein; Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). ) HSP 1 Score: 45.8 bits (107), Expect = 3.2e-05 Identity = 28/81 (34.57%), Postives = 42/81 (51.85%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
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