Clc10G00310 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc10G00310
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	High mobility group protein
Location	ClcChr10: 366279 .. 368723 (+)
RNA-Seq Expression	Clc10G00310
Synteny	Clc10G00310

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCCGCTGTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGTTACGAAAATACCCCGGACTAGTGAGATCAATGATTACCTCAACGACGCGTTAATCGTTTTATCACGTTTATGTGATAAGTTCCGCACTAACGAAGGGACGAGTTGAAGGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTTAGAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGTAGCCAATGAGAAGCGAGGACATGGATCGATGACATGGCAAAAGATTTTTGAAATCCCGCCTAAACCCGAACTTTCAATTGATATCGCGATTTCTCTCTCTCTCTCTTTAACGAAACCGACTCCCTTCATATCCCTCTCGCTACGCTCTTCCCTTCAAAGGGCTCTCCACATAACACTCAAAGCCAATCCCAAAACGCATCACACGAACCAAACCAAACCAAGCCAAATTTCTCCTCACATTTCACTCTCACACTCTCCTTTCTTATCTTCTTCCCAAACCCTAGAGTTTTACAGGTAAACTCACAATATCTCCGCCGCTCGCTCGCTTGCTCTTCGTCTCTCCCCCGCCTTTTATCTTTACCTCTTTTTTCTCCTTCGTGTATCTGCAGGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAGTGAGTTCATCGATAACTTTTAATTTTTTTATGTGTATTTTTATCTATATGATAGTATGTTTAGGAGTAGGCAGTTGGATCGGACGCGTTCGTTTTGTTATCTTTGGTTCTGTTCTCAGTTATTTATTATGTATTTTGTTATTTGATTTTTACTAGATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGTACATCTCTCTCTCTTTCTCTCTCAAACTTATCCTTTTCTTTATCGATTTTCAGATCCGTGTAATTATGGATTTTTTACTGGTTCGATTTCTTTGTTGATGAACATATAGGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTAAGTAGTTTTAGATCTGTGCATTGTTTTTCTTTTCGTTGTTCTGTTGGAGATTCTTAGGTTTTTAAAGCGTGCTCGTTCGGTCAAATGAACAGGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTACATGGAACTTGGTGTTTGCTTGCTCTGTGCTGTGGAAATTGCATAAAAGAACTCATTTGCTCGTATGTGTGCTTTGTTTTTCAGGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGTAAGTTCTCTTATGTTATTTCATTTTCTAATAGTATTTATACACATCATTATTCTCAACCGTTCTAATCATGTGCCATACTGTTAGGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGTTCGTTTACAAGTTATGCCTCAAATATGTAATTCTAGCTATAAAACAAAATAATAACCTTTTGACAATCTTTGGTTTTGAATTGCAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGTTCAGTTTTAATGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTCTTGTTCTGGGAGATGGGGTGACTCATCACATTTACTTCGTTGACTCATCACCATGGAAATGGATGCGTTTATTCCTTGAGCTTAATATACAATGTTAG

mRNA sequence

ATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCCGCTGTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTTAGAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTACATGGAACTTGGTGTTTGCTTGCTCTGTGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAAATGTTAGGGACGAGGAATGATTTGGTGGAAGAACAAGCATTTAACTCCTTCATAGTTTGGAGCAAAAAGACTCAGCAATTTAGATTTTTCTTATGTCTCGGATAAATAGCTACTTCTTTTTCCCTTTTTTTTGGGTAATTAGGATAGATGGGAGAAAAGAAATCAAAACAAAGATGGTTCAGTTTTAATGTTAGATTTCTTAAGTTGACATGAATCTGTATTCAAGGAAAATCTGTTAGTAATTGCACAATGATTCAGTTTTAGTTGATTATTCTACTAATCTCCATGAATTTTTTCTGTTCTTCTACTTCTTGTTCTGGGAGATGGGGTGACTCATCACATTTACTTCGTTGACTCATCACCATGGAAATGGATGCGTTTATTCCTTGAGCTTAATATACAATGTTAG

Coding sequence (CDS)

ATGGAGCGGCAATTGAGCTTCGATGCTCTACGATTCCTTCCGCTTCCATTTCCGGAGGATTTTTCTGCCACCACTGTGAATTTAATCAAACCAAAAGACTCCGTTCGGTCGTCGCAATACGACGGAGGTTATTCAGGAAGAAGTTGGGATCGGAATTCCGCTGTGAACATCAACAAATGGGCTTCAGCAGAAGGTCCCAAAATCCAAGGCCTAAAACCCAAGGCCCAGCCCAATTCGTGGAGAAACAAAACGCGGCGTTTTAATCTAACAAGAGAAAATATCTTAGGAAAAGAATCCAAGAAGGGAGGGGCAAATCCGTCATTTCGTGCTCAAACAACGGGCTTTAACTCACGTGTCCGGATCTGTTTAGAGGGAACAATTCACAGCGAAGAAATTGCAAACAACACACAAAGGAAACACAAAAGAGCGGAAAGCAAATGTGAAGAGGCGAAGAGATTCATCATGAAGGGCGGTAAATCCAAGGCGGCGCCTAAAAAGACCGATACTAAATTGAAGAGCAAAAGTGCTGGAGCTAGTAAGAAATCGGCCAAGGCTGCGAAGGATCCCAACAAGCCGAAGAGGCCTGCTAGTGCTTTCTTCGTTTTCATGGAGGAGTTCAGGAAGCAGTACAAGAAGGAGCATCCTAATAACAAATCCGTCGCCGCCGTTGGAAAGGCTGGCGGTGATAAATGGAAGTCAATGTCCGATGCTGTAAGTAATTACATGGAACTTGGTGTTTGCTTGCTCTGTGCTGAGAAAGCACCTTACATAAACAAGGCTGAGAAAAGGAAGACAGAGTACAACAAGAGTATGCAGGCTTATAATAAGAGAATTGCCGAGGGAGGTAATGGAGCTGAAGAAGAAGAATCAGACAAATCCAAATCAGAAGTCAATGATGACGATGAAGATGATGATGAGAGTGGAGAGGAAGACGATGATGAGTAA

Protein sequence

MERQLSFDALRFLPLPFPEDFSATTVNLIKPKDSVRSSQYDGGYSGRSWDRNSAVNINKWASAEGPKIQGLKPKAQPNSWRNKTRRFNLTRENILGKESKKGGANPSFRAQTTGFNSRVRICLEGTIHSEEIANNTQRKHKRAESKCEEAKRFIMKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE

Homology

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BLAST of Clc10G00310 vs. NCBI nr
Match: XP_038904814.1 (HMG1/2-like protein [Benincasa hispida])

HSP 1 Score: 248.8 bits (634), Expect = 6.1e-62
Identity = 146/160 (91.25%), Postives = 146/160 (91.25%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKSMSD              AEKAPYINKAEKRKTEYNKSMQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSD--------------AEKAPYINKAEKRKTEYNKSMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 146

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BLAST of Clc10G00310 vs. NCBI nr
Match: NP_001267705.1 (HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-like protein [Cucumis melo] >AAY26151.1 high mobility group protein [Cucumis sativus] >KAE8649989.1 hypothetical protein Csa_010903 [Cucumis sativus])

HSP 1 Score: 244.6 bits (623), Expect = 1.1e-60
Identity = 143/160 (89.38%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKSMSD              AEKAPYINKAEKRKTEYNKSMQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSD--------------AEKAPYINKAEKRKTEYNKSMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of Clc10G00310 vs. NCBI nr
Match: XP_022145438.1 (HMG1/2-like protein [Momordica charantia])

HSP 1 Score: 240.4 bits (612), Expect = 2.2e-59
Identity = 142/172 (82.56%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 143 AESKCEEAKRFIMKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVF 202
           + S+  E   F+MKGGKSKAAPKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVF
Sbjct: 80  SSSQTLEFAGFVMKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVF 139

Query: 203 MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEK 262
           MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS+              AEKAPYINKAEK
Sbjct: 140 MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSE--------------AEKAPYINKAEK 199

Query: 263 RKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           RKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVNDDD++DDESGEE+DDE
Sbjct: 200 RKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVNDDDDEDDESGEEEDDE 237

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BLAST of Clc10G00310 vs. NCBI nr
Match: KAG6577813.1 (hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 239.6 bits (610), Expect = 3.7e-59
Identity = 138/162 (85.19%), Postives = 145/162 (89.51%), Query Frame = 0


Query: 153 FIMKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKK 212
           F+MKGGKSKAAPKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKK
Sbjct: 10  FVMKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKK 69

Query: 213 EHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQ 272
           EHPNNKSVAAVGKAGGDKWKS+S+              AEKAPY++KAEKRK EY K+MQ
Sbjct: 70  EHPNNKSVAAVGKAGGDKWKSLSE--------------AEKAPYVSKAEKRKAEYTKTMQ 129

Query: 273 AYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           AYNKRIAEGGNGAEEEESDKSKSEVND+DEDDDESGEEDDDE
Sbjct: 130 AYNKRIAEGGNGAEEEESDKSKSEVNDEDEDDDESGEEDDDE 157

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BLAST of Clc10G00310 vs. NCBI nr
Match: XP_022923434.1 (HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cucurbita moschata] >XP_023007627.1 HMG1/2-like protein [Cucurbita maxima] >XP_023007628.1 HMG1/2-like protein [Cucurbita maxima] >XP_023552251.1 HMG1/2-like protein [Cucurbita pepo subsp. pepo])

HSP 1 Score: 235.3 bits (599), Expect = 7.0e-58
Identity = 137/160 (85.62%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSKAAPKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKS+S+              AEKAPY++KAEKRK EY K+MQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSE--------------AEKAPYVSKAEKRKAEYTKTMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVND+DEDDDESGEEDDDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDEDEDDDESGEEDDDE 146

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BLAST of Clc10G00310 vs. ExPASy Swiss-Prot
Match: P40619 (HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 1.9e-37
Identity = 104/161 (64.60%), Postives = 119/161 (73.91%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLK-SKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKE 214
           MKGGKSKA   K+D KL   K A  +KK+ KA KDPNKPKRP SAFFVFME+FRK YK++
Sbjct: 1   MKGGKSKA---KSDNKLAVKKQAADTKKTKKAVKDPNKPKRPPSAFFVFMEDFRKTYKEK 60

Query: 215 HPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQA 274
           HPNNKSVA VGKAGGDKWK               L  AEKAP+I+KAEKRK EY K++QA
Sbjct: 61  HPNNKSVAVVGKAGGDKWKQ--------------LTAAEKAPFISKAEKRKQEYEKNLQA 120

Query: 275 YNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           YNK+ A G   AEEEESDKS+SEVNDDDED D SGE+D ++
Sbjct: 121 YNKKQAAG--AAEEEESDKSRSEVNDDDEDQDGSGEDDSED 142

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BLAST of Clc10G00310 vs. ExPASy Swiss-Prot
Match: P26585 (HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 7.0e-37
Identity = 99/166 (59.64%), Postives = 119/166 (71.69%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKS------AKAAKDPNKPKRPASAFFVFMEEFRK 214
           MKGGKSK   K+ D KL     GA+ K+       KAAKDPNKPKRP SAFFVFMEEFRK
Sbjct: 1   MKGGKSKTESKRADPKLAVNKKGAATKARKPAGKGKAAKDPNKPKRPPSAFFVFMEEFRK 60

Query: 215 QYKKEHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYN 274
            + KEHP NK+V+AVGKA G KWK+MSD              AEKAPY+ K+EKRK EY 
Sbjct: 61  VFNKEHPENKAVSAVGKAAGAKWKTMSD--------------AEKAPYVAKSEKRKVEYE 120

Query: 275 KSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           K+M+AYNK+ AEG  G +EEES+KS SEVND+D+D++ SGEE+DD+
Sbjct: 121 KNMRAYNKKQAEGPTGGDEEESEKSVSEVNDEDDDEEGSGEEEDDD 152

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BLAST of Clc10G00310 vs. ExPASy Swiss-Prot
Match: P93047 (High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 8.1e-33
Identity = 94/160 (58.75%), Postives = 115/160 (71.88%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSKA  + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVAAVGKAGG+KWKS+SD              +EKAPY+ KA+KRK EY K+M+AY
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSD--------------SEKAPYVAKADKRKVEYEKNMKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NK++ EG    E+EESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

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BLAST of Clc10G00310 vs. ExPASy Swiss-Prot
Match: O49596 (High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV=1)

HSP 1 Score: 138.7 bits (348), Expect = 1.2e-31
Identity = 90/160 (56.25%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVA VGKA GDKWKS+SD              +EKAPY+ KAEKRK EY K+++AY
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSD--------------SEKAPYVAKAEKRKVEYEKNIKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NK++ EG    E+EESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

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BLAST of Clc10G00310 vs. ExPASy Swiss-Prot
Match: P40620 (HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 7.5e-31
Identity = 94/166 (56.63%), Postives = 118/166 (71.08%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGAS-----KKSAKA--AKDPNKPKRPASAFFVFMEEFR 214
           MKGGKSK   KK +TKL     GA+     KK AK    KDPNKPKRP SAFFVFM +FR
Sbjct: 1   MKGGKSKGESKKAETKLAVNKKGAAATKGGKKPAKGKEPKDPNKPKRPPSAFFVFMADFR 60

Query: 215 KQYKKEHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEY 274
           +QYKK+HPNNKSVAAVGKA G++WKS+S+               EKAPY+++A K+K EY
Sbjct: 61  EQYKKDHPNNKSVAAVGKACGEEWKSLSE--------------EEKAPYVDRALKKKEEY 120

Query: 275 NKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDD 314
             ++QAYNK++ EG +  +EE SDKSKSEVND+DED+++  +EDDD
Sbjct: 121 EITLQAYNKKL-EGKD--DEEGSDKSKSEVNDEDEDEEDEEDEDDD 149

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BLAST of Clc10G00310 vs. ExPASy TrEMBL
Match: Q4ZH67 (High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.6e-61
Identity = 143/160 (89.38%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKSMSD              AEKAPYINKAEKRKTEYNKSMQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSD--------------AEKAPYINKAEKRKTEYNKSMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 146

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BLAST of Clc10G00310 vs. ExPASy TrEMBL
Match: A0A1S3BJR7 (HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 5.6e-61
Identity = 143/160 (89.38%), Postives = 145/160 (90.62%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSK APKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKGAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKSMSD              AEKAPYINKAEKRKTEYNKSMQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSMSD--------------AEKAPYINKAEKRKTEYNKSMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE++DDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEDEDDE 146

[Close]

BLAST of Clc10G00310 vs. ExPASy TrEMBL
Match: A0A6J1CVX4 (HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 142/172 (82.56%), Postives = 150/172 (87.21%), Query Frame = 0


Query: 143 AESKCEEAKRFIMKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVF 202
           + S+  E   F+MKGGKSKAAPKKTDTKLKSKS GASKKSAKAAKDPNKPKRPASAFFVF
Sbjct: 80  SSSQTLEFAGFVMKGGKSKAAPKKTDTKLKSKSVGASKKSAKAAKDPNKPKRPASAFFVF 139

Query: 203 MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEK 262
           MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMS+              AEKAPYINKAEK
Sbjct: 140 MEEFRKQYKKEHPNNKSVAAVGKAGGDKWKSMSE--------------AEKAPYINKAEK 199

Query: 263 RKTEYNKSMQAYNKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           RKTEYNKSMQAYNKR+AEG NGAEEEESDKSKSEVNDDD++DDESGEE+DDE
Sbjct: 200 RKTEYNKSMQAYNKRLAEGENGAEEEESDKSKSEVNDDDDEDDESGEEEDDE 237

[Close]

BLAST of Clc10G00310 vs. ExPASy TrEMBL
Match: A0A6J1KZ83 (HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 137/160 (85.62%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSKAAPKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKS+S+              AEKAPY++KAEKRK EY K+MQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSE--------------AEKAPYVSKAEKRKAEYTKTMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVND+DEDDDESGEEDDDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Clc10G00310 vs. ExPASy TrEMBL
Match: A0A6J1E6E0 (HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 3.4e-58
Identity = 137/160 (85.62%), Postives = 143/160 (89.38%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKGGKSKAAPKKTDTKLKSK AGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH
Sbjct: 1   MKGGKSKAAPKKTDTKLKSKGAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           PNNKSVAAVGKAGGDKWKS+S+              AEKAPY++KAEKRK EY K+MQAY
Sbjct: 61  PNNKSVAAVGKAGGDKWKSLSE--------------AEKAPYVSKAEKRKAEYTKTMQAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NKRIAEGGNGAEEEESDKSKSEVND+DEDDDESGEEDDDE
Sbjct: 121 NKRIAEGGNGAEEEESDKSKSEVNDEDEDDDESGEEDDDE 146

[Close]

BLAST of Clc10G00310 vs. TAIR 10
Match: AT1G20696.1 (high mobility group B3 )

HSP 1 Score: 142.5 bits (358), Expect = 5.7e-34
Identity = 94/160 (58.75%), Postives = 115/160 (71.88%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSKA  + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVAAVGKAGG+KWKS+SD              +EKAPY+ KA+KRK EY K+M+AY
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSD--------------SEKAPYVAKADKRKVEYEKNMKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NK++ EG    E+EESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEEEDDD 141

[Close]

BLAST of Clc10G00310 vs. TAIR 10
Match: AT1G20693.3 (high mobility group B2 )

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-33
Identity = 91/159 (57.23%), Postives = 112/159 (70.44%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVA VGKA GDKWKS+SD              +EKAPY+ KAEKRK EY K+++AY
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSD--------------SEKAPYVAKAEKRKVEYEKNIKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDD 314
           NK++ EG    E+EESDKS SEVND+D+ +D S EEDDD
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEEDDD 143

[Close]

BLAST of Clc10G00310 vs. TAIR 10
Match: AT1G20696.3 (high mobility group B3 )

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-33
Identity = 91/155 (58.71%), Postives = 110/155 (70.97%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSKA  + T   +  K A  +K    AAKDPNKPKRP+SAFFVFME+FR  YK+EH
Sbjct: 1   MKGAKSKAETRSTKLSVTKKPAKGAK---GAAKDPNKPKRPSSAFFVFMEDFRVTYKEEH 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVAAVGKAGG+KWKS+SD              +EKAPY+ KA+KRK EY K+M+AY
Sbjct: 61  PKNKSVAAVGKAGGEKWKSLSD--------------SEKAPYVAKADKRKVEYEKNMKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGE 310
           NK++ EG    E+EESDKS SEVND+D+ +D S E
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEE 136

[Close]

BLAST of Clc10G00310 vs. TAIR 10
Match: AT1G20693.1 (high mobility group B2 )

HSP 1 Score: 138.7 bits (348), Expect = 8.3e-33
Identity = 90/160 (56.25%), Postives = 113/160 (70.62%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVA VGKA GDKWKS+SD              +EKAPY+ KAEKRK EY K+++AY
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSD--------------SEKAPYVAKAEKRKVEYEKNIKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDDDE 315
           NK++ EG    E+EESDKS SEVND+D+ +D S EE+DD+
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEEEDDD 144

[Close]

BLAST of Clc10G00310 vs. TAIR 10
Match: AT1G20693.2 (high mobility group B2 )

HSP 1 Score: 138.7 bits (348), Expect = 8.3e-33
Identity = 89/158 (56.33%), Postives = 111/158 (70.25%), Query Frame = 0


Query: 155 MKGGKSKAAPKKTDTKLKSKSAGASKKSAKAAKDPNKPKRPASAFFVFMEEFRKQYKKEH 214
           MKG KSK   + +   +  K A  + +   AAKDPNKPKRPASAFFVFME+FR+ +KKE+
Sbjct: 1   MKGAKSKTETRSSKLSVTKKPAKGAGRGKAAAKDPNKPKRPASAFFVFMEDFRETFKKEN 60

Query: 215 PNNKSVAAVGKAGGDKWKSMSDAVSNYMELGVCLLCAEKAPYINKAEKRKTEYNKSMQAY 274
           P NKSVA VGKA GDKWKS+SD              +EKAPY+ KAEKRK EY K+++AY
Sbjct: 61  PKNKSVATVGKAAGDKWKSLSD--------------SEKAPYVAKAEKRKVEYEKNIKAY 120

Query: 275 NKRIAEGGNGAEEEESDKSKSEVNDDDEDDDESGEEDD 313
           NK++ EG    E+EESDKS SEVND+D+ +D S E+DD
Sbjct: 121 NKKLEEGPK--EDEESDKSVSEVNDEDDAEDGSEEDDD 142

The following BLAST results are available for this feature:

BLAST of Clc10G00310 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038904814.1	6.1e-62	91.25	HMG1/2-like protein [Benincasa hispida]	[more]
NP_001267705.1	1.1e-60	89.38	HMG1/2-like protein-like [Cucumis sativus] >XP_008448477.1 PREDICTED: HMG1/2-lik...	[more]
XP_022145438.1	2.2e-59	82.56	HMG1/2-like protein [Momordica charantia]	[more]
KAG6577813.1	3.7e-59	85.19	hypothetical protein SDJN03_25387, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022923434.1	7.0e-58	85.63	HMG1/2-like protein [Cucurbita moschata] >XP_022923435.1 HMG1/2-like protein [Cu...	[more]

BLAST of Clc10G00310 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P40619	1.9e-37	64.60	HMG1/2-like protein OS=Ipomoea nil OX=35883 PE=2 SV=1	[more]
P26585	7.0e-37	59.64	HMG1/2-like protein OS=Glycine max OX=3847 PE=2 SV=1	[more]
P93047	8.1e-33	58.75	High mobility group B protein 3 OS=Arabidopsis thaliana OX=3702 GN=HMGB3 PE=1 SV...	[more]
O49596	1.2e-31	56.25	High mobility group B protein 2 OS=Arabidopsis thaliana OX=3702 GN=HMGB2 PE=1 SV...	[more]
P40620	7.5e-31	56.63	HMG1/2-like protein OS=Vicia faba OX=3906 PE=2 SV=1	[more]

BLAST of Clc10G00310 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q4ZH67	5.6e-61	89.38	High mobility group protein OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A1S3BJR7	5.6e-61	89.38	HMG1/2-like protein OS=Cucumis melo OX=3656 GN=LOC103490649 PE=3 SV=1	[more]
A0A6J1CVX4	1.0e-59	82.56	HMG1/2-like protein OS=Momordica charantia OX=3673 GN=LOC111014885 PE=3 SV=1	[more]
A0A6J1KZ83	3.4e-58	85.63	HMG1/2-like protein OS=Cucurbita maxima OX=3661 GN=LOC111500202 PE=3 SV=1	[more]
A0A6J1E6E0	3.4e-58	85.63	HMG1/2-like protein OS=Cucurbita moschata OX=3662 GN=LOC111431129 PE=3 SV=1	[more]

BLAST of Clc10G00310 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G20696.1	5.7e-34	58.75	high mobility group B3	[more]
AT1G20693.3	2.2e-33	57.23	high mobility group B2	[more]
AT1G20696.3	2.2e-33	58.71	high mobility group B3	[more]
AT1G20693.1	8.3e-33	56.25	high mobility group B2	[more]
AT1G20693.2	8.3e-33	56.33	high mobility group B2	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 133..153
None	No IPR available	COILS	Coil	Coil	coord: 257..277
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 274..314
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..175
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 156..194
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 293..314
None	No IPR available	PANTHER	PTHR46261:SF18	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 155..312
None	No IPR available	CDD	cd01390	HMGB-UBF_HMG-box	coord: 192..272 e-value: 4.62221E-18 score: 74.9717
IPR009071	High mobility group box domain	SMART	SM00398	hmgende2	coord: 191..276 e-value: 6.4E-20 score: 82.2
IPR009071	High mobility group box domain	PFAM	PF00505	HMG_box	coord: 192..237 e-value: 1.6E-13 score: 50.8
IPR009071	High mobility group box domain	PROSITE	PS50118	HMG_BOX_2	coord: 192..275 score: 19.249805
IPR036910	High mobility group box domain superfamily	GENE3D	1.10.30.10	High mobility group box domain	coord: 175..284 e-value: 1.1E-24 score: 88.6
IPR036910	High mobility group box domain superfamily	SUPERFAMILY	47095	HMG-box	coord: 184..278
IPR031061	High mobility group protein HMGB, plant	PANTHER	PTHR46261	HIGH MOBILITY GROUP B PROTEIN 4-RELATED	coord: 155..312

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc10G00310.2	Clc10G00310.2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006333	chromatin assembly or disassembly
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016020	membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003682	chromatin binding
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0017111	nucleoside-triphosphatase activity
molecular_function	GO:0030527	structural constituent of chromatin