Clc09G24087 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G24087
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionPentatricopeptide repeat-containing protein
LocationClcChr09: 37432023 .. 37432532 (+)
RNA-Seq ExpressionClc09G24087
SyntenyClc09G24087
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAACAAGTTTCTGTGGGCACCCTCCACTTTCGCCAATTTCGACATCAAAATCGATCATCTCCAACCAACTTTACCTTTCAATGGCGGATAAGTATTGCACCACCATGAGAGACCTGCAACAGTTTCGTGCCCACTTGATCAAATCCGGCCAGGCCAAAGACTCTTTTGCTGCTAGCCGCATATTTGGTCTTTCTGCAAATGCAAAACCCTAATCTTTTTTTCTTGGAATACAGTAATAAGAGGCTTCTCTCAAAGCTAAAACCCCCAAATTGTCCTCTCTTTTCATCGACATGTTGGTTACTTCACAAGTAGAACCGCAGAGATTGACTTACCCATCAGTTTTCAAAGCTTACTCTCAACTTGGACTTGCCCATGATAGAGCTCAGCTTCATGGGAGGATAGTAAAATTAGGCCTTCAGTTTGACCCTTTTATCAGAAACACAATTTTGTACATGTATGCTACTGGTGGGTTTTTGGATGAAGCACATCGAATCTTTAACCAATAA

mRNA sequence

ATGCTAACAAGTTTCTGTGGGCACCCTCCACTTTCGCCAATTTCGACATCAAAATCGATCATCTCCAACCAACTTTACCTTTCAATGGCGGATAAGTATTGCACCACCATGAGAGACCTGCAACAGTTTCGTGCCCACTTGATCAAATCCGGCCAGGCCAAAGACTCTTTTGCTGCTAGCCGCATATTTGAGGCTTCTCTCAAAGCTAAAACCCCCAAATTGTCCTCTCTTTTCATCGACATGTTGGTTACTTCACAAGTAGAACCGCAGAGATTGACTTACCCATCAGTTTTCAAAGCTTACTCTCAACTTGGACTTGCCCATGATAGAGCTCAGCTTCATGGGAGGATAGTAAAATTAGGCCTTCAGTTTGACCCTTTTATCAGAAACACAATTTTGTACATGTATGCTACTGGTGGGTTTTTGGATGAAGCACATCGAATCTTTAACCAATAA

Coding sequence (CDS)

ATGCTAACAAGTTTCTGTGGGCACCCTCCACTTTCGCCAATTTCGACATCAAAATCGATCATCTCCAACCAACTTTACCTTTCAATGGCGGATAAGTATTGCACCACCATGAGAGACCTGCAACAGTTTCGTGCCCACTTGATCAAATCCGGCCAGGCCAAAGACTCTTTTGCTGCTAGCCGCATATTTGAGGCTTCTCTCAAAGCTAAAACCCCCAAATTGTCCTCTCTTTTCATCGACATGTTGGTTACTTCACAAGTAGAACCGCAGAGATTGACTTACCCATCAGTTTTCAAAGCTTACTCTCAACTTGGACTTGCCCATGATAGAGCTCAGCTTCATGGGAGGATAGTAAAATTAGGCCTTCAGTTTGACCCTTTTATCAGAAACACAATTTTGTACATGTATGCTACTGGTGGGTTTTTGGATGAAGCACATCGAATCTTTAACCAATAA

Protein sequence

MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASRIFEASLKAKTPKLSSLFIDMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHRIFNQ
Homology
BLAST of Clc09G24087 vs. NCBI nr
Match: KAA0032472.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 129/184 (70.11%), Postives = 135/184 (73.37%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML SFCG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA DSFAAS
Sbjct: 1   MLASFCGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIDSFAAS 60

Query: 61  RI--FEAS------------LKAKTPKL-------------------SSLFIDMLVTSQV 120
           RI  F AS            L+ + P L                    SLFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALSLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLA+D AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAYDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. NCBI nr
Match: XP_008447140.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 1.2e-55
Identity = 129/184 (70.11%), Postives = 135/184 (73.37%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML SFCG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA DSFAAS
Sbjct: 1   MLASFCGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIDSFAAS 60

Query: 61  RI--FEAS------------LKAKTPKL-------------------SSLFIDMLVTSQV 120
           RI  F AS            L+ + P L                    SLFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALSLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLA+D AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAYDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. NCBI nr
Match: XP_004151347.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis sativus] >KGN44257.1 hypothetical protein Csa_015749 [Cucumis sativus])

HSP 1 Score: 225.3 bits (573), Expect = 3.5e-55
Identity = 128/184 (69.57%), Postives = 134/184 (72.83%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML S CG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA +SFAAS
Sbjct: 1   MLASICGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIESFAAS 60

Query: 61  RI--FEAS------------LKAKTPKLSS-------------------LFIDMLVTSQV 120
           RI  F AS            L+ + P L S                   LFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLAHD AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. NCBI nr
Match: XP_023530494.1 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 204.1 bits (518), Expect = 8.3e-49
Identity = 112/184 (60.87%), Postives = 128/184 (69.57%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           MLT++CG P LSPIS+SK  + +Q YLSM DK CTTMRDLQQ  AHLIKSG+AKDSFAAS
Sbjct: 1   MLTTYCGLPSLSPISSSKLSLFDQPYLSMVDKNCTTMRDLQQIHAHLIKSGRAKDSFAAS 60

Query: 61  R--------------------------------IFEASLKAKTPKLS-SLFIDMLVTSQV 120
           R                                I     ++  P+++  LFI MLV+SQ+
Sbjct: 61  RVLAFCASPLGNMDYAYLVFKQMQNPNVFCWNTIIRGFSQSSNPQMALYLFIHMLVSSQI 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPSVFKAYSQLGLAHD AQLHGR++KLG+QFDPFIRNTILYMYA  GFLDEA R
Sbjct: 121 EPQRLTYPSVFKAYSQLGLAHDGAQLHGRVLKLGIQFDPFIRNTILYMYANCGFLDEARR 180

BLAST of Clc09G24087 vs. NCBI nr
Match: KAG6589301.1 (Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 203.8 bits (517), Expect = 1.1e-48
Identity = 112/184 (60.87%), Postives = 127/184 (69.02%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           MLT++CG P L PIS+SK  + +Q YLSM DK CTTMRDLQQ  AHLIKSG+AKDSFAAS
Sbjct: 1   MLTTYCGLPSLPPISSSKLSLFDQPYLSMVDKNCTTMRDLQQIHAHLIKSGRAKDSFAAS 60

Query: 61  R--------------------------------IFEASLKAKTPKLS-SLFIDMLVTSQV 120
           R                                I     ++  P+++  LFI MLV+SQ+
Sbjct: 61  RVLAFCASPLGNMDYAYLVFKQMQNPNVFCWNTIIRGFSRSSNPQMALYLFIHMLVSSQI 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPSVFKAYSQLGLAHD AQLHGR+VKLG+QFDPFIRNTILYMYA  GFLDEA R
Sbjct: 121 EPQRLTYPSVFKAYSQLGLAHDGAQLHGRVVKLGIQFDPFIRNTILYMYANCGFLDEARR 180

BLAST of Clc09G24087 vs. ExPASy Swiss-Prot
Match: Q9SJG6 (Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-E75 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 6.6e-25
Identity = 72/171 (42.11%), Postives = 93/171 (54.39%), Query Frame = 0

Query: 13  PISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASR----------- 72
           P   S   +S   YL + D  C+TMR+L+Q  A LIK+G   D+  ASR           
Sbjct: 14  PAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSD 73

Query: 73  ---------------------IFEASLKAKTPKLS-SLFIDMLVTS-QVEPQRLTYPSVF 132
                                I     ++  P+++ S+FIDML +S  V+PQRLTYPSVF
Sbjct: 74  MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133

Query: 133 KAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           KAY +LG A D  QLHG ++K GL+ D FIRNT+L+MY T G L EA RIF
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184

BLAST of Clc09G24087 vs. ExPASy Swiss-Prot
Match: O82380 (Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PCMP-H33 PE=2 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 1.5e-08
Identity = 45/176 (25.57%), Postives = 82/176 (46.59%), Query Frame = 0

Query: 8   HPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASRIFE--- 67
           HP  S  +   +      ++S+ ++ C ++R L+Q   H+I++G   D ++AS++F    
Sbjct: 15  HPNFSNPNQPTTNNERSRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA 74

Query: 68  ----ASLK------AKTPKLSSL---------------------FIDMLVTSQVEPQRLT 127
               ASL+       + PK +S                      F+DM+  SQ  P + T
Sbjct: 75  LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 134

Query: 128 YPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           +P + KA +++        LHG  VK  +  D F+ N++++ Y + G LD A ++F
Sbjct: 135 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189

BLAST of Clc09G24087 vs. ExPASy Swiss-Prot
Match: Q9FI80 (Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H38 PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.6e-08
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 61  RIFEASLKAKTPKLSSLFIDMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKL 120
           R F  S + K     +LF +M+    VEP R T+PSV KA ++ G   +  Q+HG  +K 
Sbjct: 98  RGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKY 157

Query: 121 GLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           G   D F+ + ++ MY   GF+ +A  +F
Sbjct: 158 GFGGDEFVMSNLVRMYVMCGFMKDARVLF 186

BLAST of Clc09G24087 vs. ExPASy Swiss-Prot
Match: Q9FG16 (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H88 PE=3 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 2.1e-07
Identity = 34/132 (25.76%), Postives = 61/132 (46.21%), Query Frame = 0

Query: 20  IISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASRIFEASLKAKTPKLSSLFI 79
           + S  L L + D       +L  +   +    Q  + F  + +         P  +  F 
Sbjct: 46  VASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFY 105

Query: 80  DMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATG 139
             ++ S++ P  +T+P + KA S++       Q H +IV+ G Q D ++ N++++MYA  
Sbjct: 106 TQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANC 165

Query: 140 GFLDEAHRIFNQ 152
           GF+  A RIF Q
Sbjct: 166 GFIAAAGRIFGQ 177

BLAST of Clc09G24087 vs. ExPASy Swiss-Prot
Match: Q0WN60 (Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX=3702 GN=PCMP-H8 PE=2 SV=2)

HSP 1 Score: 54.7 bits (130), Expect = 1.1e-06
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 78  FIDMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYA 137
           FI+M+ T+ + P   TYP V KA + +        +HG +VK GL  D F+ N ++  Y 
Sbjct: 174 FIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYG 233

Query: 138 TGGFLDEAHRIFN 151
           T GF+ +A ++F+
Sbjct: 234 THGFVTDALQLFD 246

BLAST of Clc09G24087 vs. ExPASy TrEMBL
Match: A0A5A7SN44 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00010 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.8e-56
Identity = 129/184 (70.11%), Postives = 135/184 (73.37%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML SFCG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA DSFAAS
Sbjct: 1   MLASFCGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIDSFAAS 60

Query: 61  RI--FEAS------------LKAKTPKL-------------------SSLFIDMLVTSQV 120
           RI  F AS            L+ + P L                    SLFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALSLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLA+D AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAYDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. ExPASy TrEMBL
Match: A0A1S3BG64 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489661 PE=4 SV=1)

HSP 1 Score: 226.9 bits (577), Expect = 5.8e-56
Identity = 129/184 (70.11%), Postives = 135/184 (73.37%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML SFCG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA DSFAAS
Sbjct: 1   MLASFCGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIDSFAAS 60

Query: 61  RI--FEAS------------LKAKTPKL-------------------SSLFIDMLVTSQV 120
           RI  F AS            L+ + P L                    SLFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALSLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLA+D AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAYDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. ExPASy TrEMBL
Match: A0A0A0K7F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 1.7e-55
Identity = 128/184 (69.57%), Postives = 134/184 (72.83%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           ML S CG P LSPISTSK IISNQ YLSM DKYCTTMRDLQQF AHLIKSGQA +SFAAS
Sbjct: 1   MLASICGLPSLSPISTSKLIISNQPYLSMVDKYCTTMRDLQQFHAHLIKSGQAIESFAAS 60

Query: 61  RI--FEAS------------LKAKTPKLSS-------------------LFIDMLVTSQV 120
           RI  F AS            L+ + P L S                   LFIDMLV+SQV
Sbjct: 61  RILAFCASPLGNMDYAYLVFLQMQNPNLFSWNTVIRGFSQSSNPQIALYLFIDMLVSSQV 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPS+FKAYSQLGLAHD AQLHGRI+KLGLQFDPFIRNTILYMYATGGFL EA R
Sbjct: 121 EPQRLTYPSIFKAYSQLGLAHDGAQLHGRIIKLGLQFDPFIRNTILYMYATGGFLSEARR 180

BLAST of Clc09G24087 vs. ExPASy TrEMBL
Match: A0A6J1ER84 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111437074 PE=4 SV=1)

HSP 1 Score: 200.7 bits (509), Expect = 4.4e-48
Identity = 111/184 (60.33%), Postives = 126/184 (68.48%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           MLT++CG P L PIS+SK  + +Q YLSM DK CTTMRDLQQ  AHLIKSG+AKDSFAAS
Sbjct: 1   MLTTYCGLPSLPPISSSKLSLFDQPYLSMVDKNCTTMRDLQQIHAHLIKSGRAKDSFAAS 60

Query: 61  R--------------------------------IFEASLKAKTPKLS-SLFIDMLVTSQV 120
           R                                I     ++  P+++  LFI MLV+SQ+
Sbjct: 61  RVLAFCASPLGNMDYAYLVFKQMQNPNVFCWNTIIRGFSQSSNPQMALYLFIHMLVSSQI 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EPQRLTYPSVFKAYSQLGLAHD AQLHGR+VKLG+QFDPFIRNTILYMYA  GFLD A R
Sbjct: 121 EPQRLTYPSVFKAYSQLGLAHDGAQLHGRVVKLGIQFDPFIRNTILYMYANCGFLDGARR 180

BLAST of Clc09G24087 vs. ExPASy TrEMBL
Match: A0A6J1JLQ0 (pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbita maxima OX=3661 GN=LOC111486336 PE=4 SV=1)

HSP 1 Score: 198.4 bits (503), Expect = 2.2e-47
Identity = 109/184 (59.24%), Postives = 126/184 (68.48%), Query Frame = 0

Query: 1   MLTSFCGHPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAAS 60
           MLT++CG P LSPIS+SK  + +Q YLSM DK CTTMRDLQQ  AHLIKSG+AK+SFAAS
Sbjct: 1   MLTAYCGLPSLSPISSSKLSLFDQPYLSMVDKNCTTMRDLQQIHAHLIKSGRAKESFAAS 60

Query: 61  R--------------------------------IFEASLKAKTPKLS-SLFIDMLVTSQV 120
           R                                I     ++  P+++  LFI MLV+SQ+
Sbjct: 61  RVLAFCASPLGNMDYAYLVFKQMQNPNIFCWNTIIRGFSQSSNPQMALYLFIHMLVSSQI 120

Query: 121 EPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHR 152
           EP RLTYPSVFKAYSQLGLAHD  QLHGR+VKLG+QFDPFIRNTILYMYA  GFL+EA R
Sbjct: 121 EPHRLTYPSVFKAYSQLGLAHDGTQLHGRVVKLGIQFDPFIRNTILYMYANCGFLNEARR 180

BLAST of Clc09G24087 vs. TAIR 10
Match: AT2G42920.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 115.2 bits (287), Expect = 4.7e-26
Identity = 72/171 (42.11%), Postives = 93/171 (54.39%), Query Frame = 0

Query: 13  PISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASR----------- 72
           P   S   +S   YL + D  C+TMR+L+Q  A LIK+G   D+  ASR           
Sbjct: 14  PAMPSSGSLSGNTYLRLIDTQCSTMRELKQIHASLIKTGLISDTVTASRVLAFCCASPSD 73

Query: 73  ---------------------IFEASLKAKTPKLS-SLFIDMLVTS-QVEPQRLTYPSVF 132
                                I     ++  P+++ S+FIDML +S  V+PQRLTYPSVF
Sbjct: 74  MNYAYLVFTRINHKNPFVWNTIIRGFSRSSFPEMAISIFIDMLCSSPSVKPQRLTYPSVF 133

Query: 133 KAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           KAY +LG A D  QLHG ++K GL+ D FIRNT+L+MY T G L EA RIF
Sbjct: 134 KAYGRLGQARDGRQLHGMVIKEGLEDDSFIRNTMLHMYVTCGCLIEAWRIF 184

BLAST of Clc09G24087 vs. TAIR 10
Match: AT2G29760.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.1e-09
Identity = 45/176 (25.57%), Postives = 82/176 (46.59%), Query Frame = 0

Query: 8   HPPLSPISTSKSIISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASRIFE--- 67
           HP  S  +   +      ++S+ ++ C ++R L+Q   H+I++G   D ++AS++F    
Sbjct: 15  HPNFSNPNQPTTNNERSRHISLIER-CVSLRQLKQTHGHMIRTGTFSDPYSASKLFAMAA 74

Query: 68  ----ASLK------AKTPKLSSL---------------------FIDMLVTSQVEPQRLT 127
               ASL+       + PK +S                      F+DM+  SQ  P + T
Sbjct: 75  LSSFASLEYARKVFDEIPKPNSFAWNTLIRAYASGPDPVLSIWAFLDMVSESQCYPNKYT 134

Query: 128 YPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           +P + KA +++        LHG  VK  +  D F+ N++++ Y + G LD A ++F
Sbjct: 135 FPFLIKAAAEVSSLSLGQSLHGMAVKSAVGSDVFVANSLIHCYFSCGDLDSACKVF 189

BLAST of Clc09G24087 vs. TAIR 10
Match: AT5G48910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 58.2 bits (139), Expect = 6.8e-09
Identity = 31/89 (34.83%), Postives = 48/89 (53.93%), Query Frame = 0

Query: 61  RIFEASLKAKTPKLSSLFIDMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKL 120
           R F  S + K     +LF +M+    VEP R T+PSV KA ++ G   +  Q+HG  +K 
Sbjct: 98  RGFSESDEDKALIAITLFYEMMSDEFVEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKY 157

Query: 121 GLQFDPFIRNTILYMYATGGFLDEAHRIF 150
           G   D F+ + ++ MY   GF+ +A  +F
Sbjct: 158 GFGGDEFVMSNLVRMYVMCGFMKDARVLF 186

BLAST of Clc09G24087 vs. TAIR 10
Match: AT5G06540.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 57.0 bits (136), Expect = 1.5e-08
Identity = 34/132 (25.76%), Postives = 61/132 (46.21%), Query Frame = 0

Query: 20  IISNQLYLSMADKYCTTMRDLQQFRAHLIKSGQAKDSFAASRIFEASLKAKTPKLSSLFI 79
           + S  L L + D       +L  +   +    Q  + F  + +         P  +  F 
Sbjct: 46  VASRLLALCVDDSTFNKPTNLLGYAYGIFSQIQNPNLFVFNLLIRCFSTGAEPSKAFGFY 105

Query: 80  DMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYATG 139
             ++ S++ P  +T+P + KA S++       Q H +IV+ G Q D ++ N++++MYA  
Sbjct: 106 TQMLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANC 165

Query: 140 GFLDEAHRIFNQ 152
           GF+  A RIF Q
Sbjct: 166 GFIAAAGRIFGQ 177

BLAST of Clc09G24087 vs. TAIR 10
Match: AT1G18485.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 54.7 bits (130), Expect = 7.6e-08
Identity = 26/73 (35.62%), Postives = 42/73 (57.53%), Query Frame = 0

Query: 78  FIDMLVTSQVEPQRLTYPSVFKAYSQLGLAHDRAQLHGRIVKLGLQFDPFIRNTILYMYA 137
           FI+M+ T+ + P   TYP V KA + +        +HG +VK GL  D F+ N ++  Y 
Sbjct: 174 FIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYG 233

Query: 138 TGGFLDEAHRIFN 151
           T GF+ +A ++F+
Sbjct: 234 THGFVTDALQLFD 246

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0032472.11.2e-5570.11pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK17761... [more]
XP_008447140.11.2e-5570.11PREDICTED: pentatricopeptide repeat-containing protein At2g42920, chloroplastic ... [more]
XP_004151347.13.5e-5569.57pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucumis sa... [more]
XP_023530494.18.3e-4960.87pentatricopeptide repeat-containing protein At2g42920, chloroplastic [Cucurbita ... [more]
KAG6589301.11.1e-4860.87Pentatricopeptide repeat-containing protein, chloroplastic, partial [Cucurbita a... [more]
Match NameE-valueIdentityDescription
Q9SJG66.6e-2542.11Pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Arabidop... [more]
O823801.5e-0825.57Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidop... [more]
Q9FI809.6e-0834.83Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana OX... [more]
Q9FG162.1e-0725.76Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana OX... [more]
Q0WN601.1e-0635.62Pentatricopeptide repeat-containing protein At1g18485 OS=Arabidopsis thaliana OX... [more]
Match NameE-valueIdentityDescription
A0A5A7SN445.8e-5670.11Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946... [more]
A0A1S3BG645.8e-5670.11pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucumis ... [more]
A0A0A0K7F61.7e-5569.57Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G235760 PE=4 SV=1[more]
A0A6J1ER844.4e-4860.33pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit... [more]
A0A6J1JLQ02.2e-4759.24pentatricopeptide repeat-containing protein At2g42920, chloroplastic OS=Cucurbit... [more]
Match NameE-valueIdentityDescription
AT2G42920.14.7e-2642.11Pentatricopeptide repeat (PPR-like) superfamily protein [more]
AT2G29760.11.1e-0925.57Tetratricopeptide repeat (TPR)-like superfamily protein [more]
AT5G48910.16.8e-0934.83Pentatricopeptide repeat (PPR) superfamily protein [more]
AT5G06540.11.5e-0825.76Pentatricopeptide repeat (PPR) superfamily protein [more]
AT1G18485.17.6e-0835.62Pentatricopeptide repeat (PPR) superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10Tetratricopeptide repeat domaincoord: 18..151
e-value: 9.7E-8
score: 33.7
NoneNo IPR availablePANTHERPTHR47928REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATEDcoord: 75..150
coord: 2..63
NoneNo IPR availablePANTHERPTHR47928:SF97OS03G0635000 PROTEINcoord: 75..150
coord: 2..63

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G24087.1Clc09G24087.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding