Clc09G24083 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G24083
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionUnknown protein
LocationClcChr09: 37430444 .. 37432362 (-)
RNA-Seq ExpressionClc09G24083
SyntenyClc09G24083
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTAAGTCAATCTCTGCGGTTCTACTTGTGAAGTAACCAACATGTCGATGAAAAGAGAGGACAATTTGGGGGTTTTAGCTTTGAGAGAAGCCTCTTATTACTGTATTCCAAGAAAAAAAGATTAGGGTTTTGCATTTGCAGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGGTAAAGTTGGTTGGAGATGATCGATTTTGATGTCGAAATTGGCGAAAGTGGAGGGTGCCCACAGAAACTTGTTAGCATTTTTCACTTCTGATTCTCAGGTTTTAGTGTTTACCTCACAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGGTATTGTTTCTTTCTAATCCAGCTATAGTGCAAATGGCAAGCTTAGGATTCACTTTTAGACTTTCCACTTTAAAATCGTATTCACCTTCACCATTTTTGTTTTGAAACTTTTGGCGTGGACTGGACCTGAATTAAGGACTTCCATTCAAAATGTGCAGTACTTTTTCTATTTGGGTTTTATTTAGAATATTCATGCACTGGTTAGATCTTAAAAAAATTGATGTCCTTAAGAACTTTCTGTAGTTAATGTTTGGTATTTGGGCTATTTTGAGTTTATCAAAGACTGTTTATATATATGTATGTGAACATTCTTGTCAGGATTGATTATCTAACTGAATTTCCTTCAACTACCTTGGACTTATATAAGCAAGGGATATTTAAGTAAAAAAGATTCAGTGGTGACCCATTGTCCTCCAAATTAGGATTCCCCATTAATCAATTGCACTGTAGTTAGTCAAGATTGTGGGATCAGAAGGAAATAATTAGGCAGGAAAAAGATGAACCCATTTTAATACATCCATGCTGAAGTGGCCAGAAAGGAGAAGGGGAAAAAAATAAACATATCATAACCATCATTACAGCAACGATTATCAGTAAGCAGCCCACATTAAAGAACTAAATTTCAATCATATCTTTCTTTTTATTTTCTTTTTGTTAACCATCCTCGGGCTTCCCCCCATTTTGATTTCCCTCTCTTTTCCTTCCTCTGTCTCTCATTTGCTCGCACCCCCCTACACCCTATGTCTACTCTCTCTCTCTCTCTCTCCACCCAAAGAAAAAGGGGGCACTTGTACTTTCGAAATGGATATTTTACAGGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGGTAATGATGCCACTCCACAATATCATTTCGAATTCTCTATATTTAAACCAGAAGGAAAGCAGGAAGCTCTGATAACTAAGGAACTATCATCTAAAAAGTGGGAGGATGAGGAACAGCCTGCTCATTAGAGGAAGAACAGGAGGATTGACCCATGACTGGGTTATACACAGCCTAATATTCCTCATTCTTGGTCATTTTCTCTATCCAGGTGACTGATTATTCATTTCTTCTGTAAATTTGGAGTCTATGTGAGGATCAAACGGCTATTTAGATATTTCTGTTACAGGCATTTAATGCATTCCGATTGAATTTTCTTGCATTTATACAGTTAAAGCATGTACCTTTTCTTCTCTCATCTACTGTCTGCTACACAACCTTAAATGCCCATTAATTGTATTTCTGCCGCATTATTCAAAATTGTCTTTTTTCTAAGGGCCATATTTATGGTTTCATATTCATCTTTTTTCCCCAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

mRNA sequence

ATGGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGCAACGATTATCAGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

Coding sequence (CDS)

ATGGAAAGACCAAATATGCGGCTAGCAGCAAAAGAGTCTTTGGCCTGGCCGGATTTGATCAAGTGGGCACGAAACTGTTGCAGGTCTCTCATGGTGGTGCAATACTTATCCGCCATTGAAAGAACTCACAAAGTGGCTGAAGAAGGTGTAGAACTTTCCAATGGTGTGGCCATGGCAGAAACTCCGTCATCCAATTCCAATCTCGGGCAGGGCCACCATCCACCCGAAAAAAGAAGTCATTATTCACATGGGCCACTGCAACGATTATCAGACAAGGAGTGTAAAGTCTTCAACTTTCCGACAAGAACTGAGCGAATTGAAGTTTCTCGTTTTCCTTCCCATTTGGGTCTTCCGCGAATGACTGTTCTGAGTTGTAGATTGTGA

Protein sequence

MERPNMRLAAKESLAWPDLIKWARNCCRSLMVVQYLSAIERTHKVAEEGVELSNGVAMAETPSSNSNLGQGHHPPEKRSHYSHGPLQRLSDKECKVFNFPTRTERIEVSRFPSHLGLPRMTVLSCRL
Homology
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BLAST of Clc09G24083 vs. NCBI nr
Match: KAG7012048.1 (hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 82.4 bits (202), Expect = 3.1e-12
Identity = 38/45 (84.44%), Postives = 44/45 (97.78%), Query Frame = 0 

Query: 41  RTHKVAEEGVELSNGVAMAETPSSNSNLGQGHHPPEKRSHYSHGP 86
           RTH+VAEEGVELS+GVAMAETPSSNSNL +GHHPP+KRSH++HGP
Sbjct: 69  RTHEVAEEGVELSSGVAMAETPSSNSNLRRGHHPPKKRSHHTHGP 113

The following BLAST results are available for this feature:
BLAST of Clc09G24083 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG7012048.13.1e-1284.44hypothetical protein SDJN02_26956, partial [Cucurbita argyrosperma subsp. argyro... [more]
BLAST of Clc09G24083 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G24083 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of Clc09G24083 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..87
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 58..72
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 73..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G24083.1Clc09G24083.1mRNA