Clc09G23460 (gene) Watermelon (cordophanus) v2
Overview
Sequences
The following sequences are available for this feature:
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGGCCCACAAAAACCCTTACATGAAACCGAAAGAGGGAATCCCAAACAGGGCTGGCGGGAGCAGAAGAAGAATCATCATGAAGACGAAGGGCAGTTAGGGCAAAGCTCTGAACATACAGATTCCCCATAACAACGCCGGAGGAGGAATCGCTGCGACTCGAAAACATCAGAGACAGGTACGAGAGCTTTTCATCTTCTACTTGGTCGAAGAACTGAAGTTGTAAGTTTACTTAGGCGGTTTTTTTGACACAATGGTGGACGGGAGTATTGGTGATCGTTTACTGGATGAGCGGTTTGATAGGCGATTGAAGCAAAGGGTTACTGCGAACCATCTATGTAAAAGTTTATGTTTCGAAACTGTGGAGGAGTATGAGATAGAAGAATGCGACAAGGAGTATTTAGTATTCTTAAATGGTTTGACGAACGGTGTGGACAGTAGTGATGAGAAGGTTGATGCTAATCTTGAGGATTTTGGGCATTGTACCAATGATAATGCGACTTCACCGTGTGACTGGTCGGATAAAGAAGTTGATCCTGTTTATAGGATGTTCTTTCAGCATTTGATTGAAGAGGGAAAAGCTTATAAGCTCGAAATTCCATCGGTTAATGGGATGAAAGTGTATGTGAAGTACGAGGAACAAGAACATGAACAAGAACAATCAAGTCTGAAGAGTGATCAGAATAGAAAAAGACCTGGAACGACTAGGATCTTAAGGAGTGCTTCAAAGAAAATGGAGATAGAGAGCGCAGCAAAAGAAAGCCCGGTTCCTGTTTTTGAGAAAGAGGTCAATCTGGATTGTGCAGAATCTATATCTCATGGGGTAGATGGAAATTCAAGCACAATCCCTGGTACACTTCGTTCTGCTAAGCATCTTTCCTTATCCGATTCCGACTCGGATGTGCTAGATGAAGACTACAAGACATTTTTGACTGATTTTTTTTATGATGATGATCATAGATTGATATATATGCCAGTAGACGGAAGGTCAATTGTATATGAGGACGATGAAAGTACCTCTGATTCAGAAGTGGTGATGGTTGACACTGATCAATGTAAGCGACGCCGTGGTTCCTTTGGGCGAAAATATTCTCGTTCTTCTGTGAGTATATCTAATTCTGGTGCTATGATCTCTCTGTAGTCTAATGGGGAAGGATATCTGTTTCTGTATGTTAGTTGTTCTATGTCTTATATTGATAGAATATTTCTCTTTCCAGATGGATGTAGATGGTGGGAAGTGTCTTGCGAGTCGTGGTATATGCAATGGTTCCAATTTCAGGGAAAGGCTCATGAAAGTTCTTAAAAGTCCTTATGACCAACATGAGTACGACTTTTATCTTGATGAAATAAGTTGCCGTAAGCCACTTGTCCGTCATAGAGAGTTACGTAGTCGAGTGCTAAAAGCATATACACTAGAATCTTGCGGCAATTCATATCTTCATATCTATAGCGGTGAGTGTTTTTAATCCCATGTGATTTTCTTTTGGAATTTTTTTGTTATCATTCTTCTTTAATATATTAAAAGGCTCTATGAGCTACGTATTTCCTGAAGAGATTCATCCTAAGAGAGATCTTCTAACCCTGATCTGATACTTTTATCAGATTCTACTTTCGTAATTTGCTCCAATATTTTCTCAAATTATTCAGATAACATGATTTTTCACTCTTCTAACTTTCAAAGAACTACCTACTAAGTGTTAAAAAGAACCATGAGAAATTTTCTAATACTAACGTAGTACTTACCCATCCGTCCAGAATGTCACACATCATTTAATGATCTATAATTTTGTTTCATGGGAAAAATATGAAAATATGAAAAAAAATTTACATATTACCCATAGTGTTGGAAATTGGCCCATGGAACTATCTTCTAGCTCGATGTGATAAATTCTTTCATCCAAAAAAGAAGTGTTAAAGCAACCTTTGGACATGTATTATTGTTTATCAAATAAATATCCGATTATGCTCTTGCCTTCTTCTGGTCCATTAATTTCTTTGTACCAAAATTATTTGCGAGATGTCCTTTATTACCAGTGTGAGGTTCTATTTATTGATTGTATCTCCTCTGTTTTTCTTATGGCAGAGCTTGCTACGAGAATTCAAGCAGTTCAATATGATCGCCCCAGAACTTTGAACCTACTGCGTGGCTTCTTCTATTGGTTGCAGGTAGTTTTTATATTATTTGGCACAAATTTTTTTTATTAAGACACCACTTCCTTCTGTTAAAAGGCCGGAGGTATTCTTGTTGAACTTGTAAAAATAGGCATTTTTGGTAATTACGATGGTACTGAATGGGAATGAAAAGAATAGTATAAATGAAGTTTTCTCACTTGCCAGTTAATGCACTTCATTATTGAATGTCTATCATGGGTTTAAATTCTTAGGTTTTTTTTCTCAAAGAATTATTCTGTAAAACTCTGCTCATTTGGTAAGAAACCTTGCAATCCACATTTTGTGATTATTTCTTTCTTTCTATGTTAGAATTTATCACATGACGATGCCTTTCGGCCTTGGATGGACCCATCATGCTTGGATGTGTTGCCACAGTCATAACTTGGAAGTTTAGCTCAATTTGGCTCTTGTTTCACTTTATGGGCTGACGAATGAATCCAGATAAAATGGTATCCTGAATGCATTTTGGTGGTGGTGGGTTTCATGTATTTGTAATTATGGTAGGAATTAACAGGTGTTATATTCCATTTCATTTTTCCTCTTTCTAGTATGAGCCCATGACATTGAAGTGTAGAAGAAACGCATTCCTTCTGCTTAAGTGCAGCATTGCTCCTTTTTATTCTATGTGCTTCCTTTTCCTTTTAATTTGAAAGATTTCATTTCAATACAAGTTACAGGAGAAGAACCAACCAAGATTTCGATTATGAAACAGGGAATTGAGGGAGGACAAACCATCACCCCGACTCCGAGTTAATCAACTCTATACTCTAAACACAGTTTTAACAACTCCAAGTTAATCAACTTTACTCTCTAAACACAAACTTCATAACTTTAGACTAAACAACTCTACGTTCTAAACACTCGGTCGATGATGATTATCTTGTATAACTCTTTCTTTGGAGTTTGGACAGCTCTTTTGGACGTGTGGAATGTCTTTTTCTTTTCTTTTTTCTCCCTAATGTAGTAGGTTTTGAAGGTAGAAAGCTACATATTATGCTTTGATGCAGCATCAGAATGAGACAAGCAAGGGAATGATAAGTATAAGGTGAGGAATTATGATTGTATTTGGAAGACAAACACATTCATTGAATATGTCACATTTGATTACATTTGTAAAGTAATTTATTGTGATTGTAGATCCTGG GGGCCCACAAAAACCCTTACATGAAACCGAAAGAGGGAATCCCAAACAGGGCTGGCGGGAGCAGAAGAAGAATCATCATGAAGACGAAGGGCAGTTAGGGCAAAGCTCTGAACATACAGATTCCCCATAACAACGCCGGAGGAGGAATCGCTGCGACTCGAAAACATCAGAGACAGGTACGAGAGCTTTTCATCTTCTACTTGGTCGAAGAACTGAAGTTGTAAGTTTACTTAGGCGGTTTTTTTGACACAATGGTGGACGGGAGTATTGGTGATCGTTTACTGGATGAGCGGTTTGATAGGCGATTGAAGCAAAGGGTTACTGCGAACCATCTATGTAAAAGTTTATGTTTCGAAACTGTGGAGGAGTATGAGATAGAAGAATGCGACAAGGAGTATTTAGTATTCTTAAATGGTTTGACGAACGGTGTGGACAGTAGTGATGAGAAGGTTGATGCTAATCTTGAGGATTTTGGGCATTGTACCAATGATAATGCGACTTCACCGTGTGACTGGTCGGATAAAGAAGTTGATCCTGTTTATAGGATGTTCTTTCAGCATTTGATTGAAGAGGGAAAAGCTTATAAGCTCGAAATTCCATCGGTTAATGGGATGAAAGTGTATGTGAAGTACGAGGAACAAGAACATGAACAAGAACAATCAAGTCTGAAGAGTGATCAGAATAGAAAAAGACCTGGAACGACTAGGATCTTAAGGAGTGCTTCAAAGAAAATGGAGATAGAGAGCGCAGCAAAAGAAAGCCCGGTTCCTGTTTTTGAGAAAGAGGTCAATCTGGATTGTGCAGAATCTATATCTCATGGGGTAGATGGAAATTCAAGCACAATCCCTGGTACACTTCGTTCTGCTAAGCATCTTTCCTTATCCGATTCCGACTCGGATGTGCTAGATGAAGACTACAAGACATTTTTGACTGATTTTTTTTATGATGATGATCATAGATTGATATATATGCCAGTAGACGGAAGGTCAATTGTATATGAGGACGATGAAAGTACCTCTGATTCAGAAGTGGTGATGGTTGACACTGATCAATGTAAGCGACGCCGTGGTTCCTTTGGGCGAAAATATTCTCGTTCTTCTATGGATGTAGATGGTGGGAAGTGTCTTGCGAGTCGTGGTATATGCAATGGTTCCAATTTCAGGGAAAGGCTCATGAAAGTTCTTAAAAGTCCTTATGACCAACATGAGTACGACTTTTATCTTGATGAAATAAGTTGCCGTAAGCCACTTGTCCGTCATAGAGAGTTACGTAGTCGAGTGCTAAAAGCATATACACTAGAATCTTGCGGCAATTCATATCTTCATATCTATAGCGAGCTTGCTACGAGAATTCAAGCAGTTCAATATGATCGCCCCAGAACTTTGAACCTACTGCGTGGCTTCTTCTATTGGTTGCAGAATTTATCACATGACGATGCCTTTCGGCCTTGGATGGACCCATCATGCTTGGATGTGTTGCCACAGTCATAACTTGGAAGTTTAGCTCAATTTGGCTCTTGTTTCACTTTATGGGCTGACGAATGAATCCAGATAAAATGGTATCCTGAATGCATTTTGGTGGTGGTGGGTTTCATGTATTTGTAATTATGGTAGGAATTAACAGGTGTTATATTCCATTTCATTTTTCCTCTTTCTAGTATGAGCCCATGACATTGAAGTGTAGAAGAAACGCATTCCTTCTGCTTAAGTGCAGCATTGCTCCTTTTTATTCTATGTGCTTCCTTTTCCTTTTAATTTGAAAGATTTCATTTCAATACAAGTTACAGGAGAAGAACCAACCAAGATTTCGATTATGAAACAGGGAATTGAGGGAGGACAAACCATCACCCCGACTCCGAGTTAATCAACTCTATACTCTAAACACAGTTTTAACAACTCCAAGTTAATCAACTTTACTCTCTAAACACAAACTTCATAACTTTAGACTAAACAACTCTACGTTCTAAACACTCGGTCGATGATGATTATCTTGTATAACTCTTTCTTTGGAGTTTGGACAGCTCTTTTGGACGTGTGGAATGTCTTTTTCTTTTCTTTTTTCTCCCTAATGTAGTAGGTTTTGAAGGTAGAAAGCTACATATTATGCTTTGATGCAGCATCAGAATGAGACAAGCAAGGGAATGATAAGTATAAGGTGAGGAATTATGATTGTATTTGGAAGACAAACACATTCATTGAATATGTCACATTTGATTACATTTGTAAAGTAATTTATTGTGATTGTAGATCCTGG ATGGTGGACGGGAGTATTGGTGATCGTTTACTGGATGAGCGGTTTGATAGGCGATTGAAGCAAAGGGTTACTGCGAACCATCTATGTAAAAGTTTATGTTTCGAAACTGTGGAGGAGTATGAGATAGAAGAATGCGACAAGGAGTATTTAGTATTCTTAAATGGTTTGACGAACGGTGTGGACAGTAGTGATGAGAAGGTTGATGCTAATCTTGAGGATTTTGGGCATTGTACCAATGATAATGCGACTTCACCGTGTGACTGGTCGGATAAAGAAGTTGATCCTGTTTATAGGATGTTCTTTCAGCATTTGATTGAAGAGGGAAAAGCTTATAAGCTCGAAATTCCATCGGTTAATGGGATGAAAGTGTATGTGAAGTACGAGGAACAAGAACATGAACAAGAACAATCAAGTCTGAAGAGTGATCAGAATAGAAAAAGACCTGGAACGACTAGGATCTTAAGGAGTGCTTCAAAGAAAATGGAGATAGAGAGCGCAGCAAAAGAAAGCCCGGTTCCTGTTTTTGAGAAAGAGGTCAATCTGGATTGTGCAGAATCTATATCTCATGGGGTAGATGGAAATTCAAGCACAATCCCTGGTACACTTCGTTCTGCTAAGCATCTTTCCTTATCCGATTCCGACTCGGATGTGCTAGATGAAGACTACAAGACATTTTTGACTGATTTTTTTTATGATGATGATCATAGATTGATATATATGCCAGTAGACGGAAGGTCAATTGTATATGAGGACGATGAAAGTACCTCTGATTCAGAAGTGGTGATGGTTGACACTGATCAATGTAAGCGACGCCGTGGTTCCTTTGGGCGAAAATATTCTCGTTCTTCTATGGATGTAGATGGTGGGAAGTGTCTTGCGAGTCGTGGTATATGCAATGGTTCCAATTTCAGGGAAAGGCTCATGAAAGTTCTTAAAAGTCCTTATGACCAACATGAGTACGACTTTTATCTTGATGAAATAAGTTGCCGTAAGCCACTTGTCCGTCATAGAGAGTTACGTAGTCGAGTGCTAAAAGCATATACACTAGAATCTTGCGGCAATTCATATCTTCATATCTATAGCGAGCTTGCTACGAGAATTCAAGCAGTTCAATATGATCGCCCCAGAACTTTGAACCTACTGCGTGGCTTCTTCTATTGGTTGCAGAATTTATCACATGACGATGCCTTTCGGCCTTGGATGGACCCATCATGCTTGGATGTGTTGCCACAGTCATAA MVDGSIGDRLLDERFDRRLKQRVTANHLCKSLCFETVEEYEIEECDKEYLVFLNGLTNGVDSSDEKVDANLEDFGHCTNDNATSPCDWSDKEVDPVYRMFFQHLIEEGKAYKLEIPSVNGMKVYVKYEEQEHEQEQSSLKSDQNRKRPGTTRILRSASKKMEIESAAKESPVPVFEKEVNLDCAESISHGVDGNSSTIPGTLRSAKHLSLSDSDSDVLDEDYKTFLTDFFYDDDHRLIYMPVDGRSIVYEDDESTSDSEVVMVDTDQCKRRRGSFGRKYSRSSMDVDGGKCLASRGICNGSNFRERLMKVLKSPYDQHEYDFYLDEISCRKPLVRHRELRSRVLKAYTLESCGNSYLHIYSELATRIQAVQYDRPRTLNLLRGFFYWLQNLSHDDAFRPWMDPSCLDVLPQS Homology
BLAST of Clc09G23460 vs. NCBI nr
Match: XP_038899188.1 (uncharacterized protein LOC120086550 [Benincasa hispida]) HSP 1 Score: 649.8 bits (1675), Expect = 1.6e-182 Identity = 331/415 (79.76%), Postives = 360/415 (86.75%), Query Frame = 0
BLAST of Clc09G23460 vs. NCBI nr
Match: XP_008447196.1 (PREDICTED: uncharacterized protein LOC103489706 isoform X1 [Cucumis melo]) HSP 1 Score: 548.5 bits (1412), Expect = 4.9e-152 Identity = 295/415 (71.08%), Postives = 332/415 (80.00%), Query Frame = 0
BLAST of Clc09G23460 vs. NCBI nr
Match: XP_004139802.2 (uncharacterized protein LOC101206512 [Cucumis sativus] >KGN44203.1 hypothetical protein Csa_016719 [Cucumis sativus]) HSP 1 Score: 537.3 bits (1383), Expect = 1.1e-148 Identity = 294/415 (70.84%), Postives = 326/415 (78.55%), Query Frame = 0
BLAST of Clc09G23460 vs. NCBI nr
Match: XP_008447198.1 (PREDICTED: uncharacterized protein LOC103489706 isoform X3 [Cucumis melo]) HSP 1 Score: 525.4 bits (1352), Expect = 4.4e-145 Identity = 277/373 (74.26%), Postives = 310/373 (83.11%), Query Frame = 0
BLAST of Clc09G23460 vs. NCBI nr
Match: KAG6607713.1 (hypothetical protein SDJN03_01055, partial [Cucurbita argyrosperma subsp. sororia]) HSP 1 Score: 520.8 bits (1340), Expect = 1.1e-143 Identity = 273/414 (65.94%), Postives = 316/414 (76.33%), Query Frame = 0
BLAST of Clc09G23460 vs. ExPASy TrEMBL
Match: A0A1S3BGV3 (uncharacterized protein LOC103489706 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103489706 PE=4 SV=1) HSP 1 Score: 548.5 bits (1412), Expect = 2.4e-152 Identity = 295/415 (71.08%), Postives = 332/415 (80.00%), Query Frame = 0
BLAST of Clc09G23460 vs. ExPASy TrEMBL
Match: A0A0A0K3W2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G221350 PE=4 SV=1) HSP 1 Score: 537.3 bits (1383), Expect = 5.4e-149 Identity = 294/415 (70.84%), Postives = 326/415 (78.55%), Query Frame = 0
BLAST of Clc09G23460 vs. ExPASy TrEMBL
Match: A0A1S3BHR2 (uncharacterized protein LOC103489706 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103489706 PE=4 SV=1) HSP 1 Score: 525.4 bits (1352), Expect = 2.1e-145 Identity = 277/373 (74.26%), Postives = 310/373 (83.11%), Query Frame = 0
BLAST of Clc09G23460 vs. ExPASy TrEMBL
Match: A0A6J1IZM3 (uncharacterized protein LOC111480594 OS=Cucurbita maxima OX=3661 GN=LOC111480594 PE=4 SV=1) HSP 1 Score: 520.0 bits (1338), Expect = 9.0e-144 Identity = 273/414 (65.94%), Postives = 315/414 (76.09%), Query Frame = 0
BLAST of Clc09G23460 vs. ExPASy TrEMBL
Match: A0A6J1FPT2 (uncharacterized protein LOC111446156 OS=Cucurbita moschata OX=3662 GN=LOC111446156 PE=4 SV=1) HSP 1 Score: 516.5 bits (1329), Expect = 1.0e-142 Identity = 271/414 (65.46%), Postives = 315/414 (76.09%), Query Frame = 0
BLAST of Clc09G23460 vs. TAIR 10
Match: AT1G77270.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 428 Blast hits to 388 proteins in 92 species: Archae - 0; Bacteria - 31; Metazoa - 189; Fungi - 10; Plants - 97; Viruses - 0; Other Eukaryotes - 101 (source: NCBI BLink). ) HSP 1 Score: 84.7 bits (208), Expect = 1.9e-16 Identity = 39/102 (38.24%), Postives = 66/102 (64.71%), Query Frame = 0
BLAST of Clc09G23460 vs. TAIR 10
Match: AT3G07730.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 1299 Blast hits to 1149 proteins in 206 species: Archae - 3; Bacteria - 100; Metazoa - 453; Fungi - 114; Plants - 108; Viruses - 2; Other Eukaryotes - 519 (source: NCBI BLink). ) HSP 1 Score: 79.3 bits (194), Expect = 7.8e-15 Identity = 45/122 (36.89%), Postives = 65/122 (53.28%), Query Frame = 0
BLAST of Clc09G23460 vs. TAIR 10
Match: AT4G01170.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G07730.1); Has 211 Blast hits to 211 proteins in 60 species: Archae - 0; Bacteria - 22; Metazoa - 50; Fungi - 11; Plants - 77; Viruses - 0; Other Eukaryotes - 51 (source: NCBI BLink). ) HSP 1 Score: 75.9 bits (185), Expect = 8.6e-14 Identity = 43/123 (34.96%), Postives = 65/123 (52.85%), Query Frame = 0
BLAST of Clc09G23460 vs. TAIR 10
Match: AT1G21560.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1); Has 76 Blast hits to 76 proteins in 15 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 2; Plants - 67; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). ) HSP 1 Score: 71.2 bits (173), Expect = 2.1e-12 Identity = 59/202 (29.21%), Postives = 87/202 (43.07%), Query Frame = 0
BLAST of Clc09G23460 vs. TAIR 10
Match: AT1G21560.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G01170.1). ) HSP 1 Score: 65.1 bits (157), Expect = 1.5e-10 Identity = 85/348 (24.43%), Postives = 135/348 (38.79%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31
Relationships
The following mRNA feature(s) are a part of this gene:
|