Clc09G22120 (gene) Watermelon (cordophanus) v2

Overview
NameClc09G22120
Typegene
OrganismCitrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
DescriptionAcetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic
LocationClcChr09: 35471281 .. 35472270 (+)
RNA-Seq ExpressionClc09G22120
SyntenyClc09G22120
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGAAGACATGGTCCCTTTGGATCCCATTGAATTTCATTTGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAAGATTAACTAAGGCTATTCAAACAGGCACAGGTAAATTAAACGGTATTCCCGTAGCAATCGGGGTTATGGATTTTCAGTTTATGGGGTAGTATGGGATCTGTAGTAGGTGAGAAAATCACCCGTTTGATCGAGTATGCTACCAATCAATTTTTACCTCTTATTTTAGTGTGTGCTTCTAGATGAAGTGACTTTAATATACTTCAATGTGTATGAGTAATGCACACCCTTTTTTTAAAATCTCATTAAAAACAAAATAAAAAAATTTTAGAAAGGATGTCCCTAAGCTTTATGTTTATATTCTCACCATGAAACAAAACATTAAGGCCCCGGTTGGTAACTTCTTTTTTTTTTTTTTTTTTTTTTTTTTAAATTAGGCCTATTTCATTCACTTTTGCATGTCTTTTATTAAAAGGACAACTATGGTTGATATTGAGCAATTGACTTGCTCACATAGTGTTGGCAAAAAAACTCGTGGGCCTCGACCCGATCGGGTCGGGGAATCCCCGGTTTGACCGAGGAGGGGGGTCAAACCAGGGAGATTCCTTAGGTACCCGGTCGAGGTGGGGATGGGAGCGTATCCCCGCCCCTGACCCGATATATCCCCGATCGCCTCTATATATATATATATATATAGCTCTGTCTCGCTCTCGCTCTCTCTCTATCTCGCTCTATTTATTGGTTCTGCATTTGAAGTCGCAATCTCGCTCTTTCTCACAATCTCGCTGTCTCGCTCTCGCTCTATCTTAGGGAATAGGTCCTCACGGGGATCCATTTTCTCGTCGGGATGGATGGGGCGGGGATGGGGAACCCCCGCTTGCATCGCCCCACCCCTGTTGCCAACTCTATGCTCACATGTTACACTAATGACTTTTATTGTCATTGACACGCAATCTTAG

mRNA sequence

ATGGATGAAGACATGGTCCCTTTGGATCCCATTGAATTTCATTTGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAAGATTAACTAAGGCTATTCAAACAGGCACAGTGTTGGCAAAAAAACTCGTGGGCCTCGACCCGATCGGGTCGGGGAATCCCCGGTTTGACCGAGGAGGGGGGTCAAACCAGGGAGATTCCTTAGTCGCAATCTCGCTCTTTCTCACAATCTCGCTGTCTCGCTCTCGCTCTATCTTAGGGAATAGGTCCTCACGGGGATCCATTTTCTCGTCGGGATGGATGGGGCGGGGATGGGGAACCCCCGCTTGCATCGCCCCACCCCTGTTGCCAACTCTATGCTCACATGTTACACTAATGACTTTTATTGTCATTGACACGCAATCTTAG

Coding sequence (CDS)

ATGGATGAAGACATGGTCCCTTTGGATCCCATTGAATTTCATTTGGAGGAGGAACCTTATAAAGATCGTATTGATTCTTATCAAATAAAGACAAGATTAACTAAGGCTATTCAAACAGGCACAGTGTTGGCAAAAAAACTCGTGGGCCTCGACCCGATCGGGTCGGGGAATCCCCGGTTTGACCGAGGAGGGGGGTCAAACCAGGGAGATTCCTTAGTCGCAATCTCGCTCTTTCTCACAATCTCGCTGTCTCGCTCTCGCTCTATCTTAGGGAATAGGTCCTCACGGGGATCCATTTTCTCGTCGGGATGGATGGGGCGGGGATGGGGAACCCCCGCTTGCATCGCCCCACCCCTGTTGCCAACTCTATGCTCACATGTTACACTAATGACTTTTATTGTCATTGACACGCAATCTTAG

Protein sequence

MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRFDRGGGSNQGDSLVAISLFLTISLSRSRSILGNRSSRGSIFSSGWMGRGWGTPACIAPPLLPTLCSHVTLMTFIVIDTQS
Homology
[Close]
BLAST of Clc09G22120 vs. NCBI nr
Match: KAG6579350.1 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.9 bits (198), Expect = 9.7e-12
Identity = 48/66 (72.73%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1  MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
          MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LTKAIQTGT    KL G+ PI  G   F
Sbjct: 19 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTKAIQTGT---GKLNGI-PIAIGIMDF 78

Query: 61 DRGGGS 67
             GGS
Sbjct: 79 KFMGGS 80

[Close]
BLAST of Clc09G22120 vs. NCBI nr
Match: YP_009447459.1 (acetyl-CoA carboxylase beta subunit [Cucurbita maxima] >ATY69918.1 acetyl-CoA carboxylase beta subunit [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 270 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 329

Query: 61  DRGGGS 67
              GGS
Sbjct: 330 QFMGGS 331

[Close]
BLAST of Clc09G22120 vs. NCBI nr
Match: QWV60849.1 (acetyl-CoA carboxylase carboxyltransferase beta subunit [Cucurbita ficifolia])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 320 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 379

Query: 61  DRGGGS 67
              GGS
Sbjct: 380 QFMGGS 381

[Close]
BLAST of Clc09G22120 vs. NCBI nr
Match: QZL38806.1 (acetyl-CoA carboxylase beta subunit [Cucurbita ficifolia])

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 272 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 331

Query: 61  DRGGGS 67
              GGS
Sbjct: 332 QFMGGS 333

[Close]
BLAST of Clc09G22120 vs. NCBI nr
Match: YP_009447544.1 (acetyl-CoA carboxylase beta subunit [Cucurbita moschata] >ATY70000.1 acetyl-CoA carboxylase beta subunit [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 2.8e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 270 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 329

Query: 61  DRGGGS 67
              GGS
Sbjct: 330 KFMGGS 331

[Close]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match: Q49KY9 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=accD PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 44/66 (66.67%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQ KT LT A+QTGT    +L G+ PI  G   F
Sbjct: 278 MDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTDAVQTGT---GRLNGI-PIAIGVMDF 337

Query: 61  DRGGGS 67
              GGS
Sbjct: 338 QFMGGS 339

[Close]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match: P49158 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Glycine max OX=3847 GN=accD PE=2 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 9.1e-13
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQ KT LT+A+QTGT    +L G+ P+  G   F
Sbjct: 215 MDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGT---GQLNGI-PVAIGIMDF 274

Query: 61  DRGGGS 67
              GGS
Sbjct: 275 QFMGGS 276

[Close]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match: Q09X08 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Morus indica OX=248361 GN=accD PE=3 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 2.0e-12
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEF+ EEEPYKDRIDSYQ KT LT+A+QTGT    KL G+ P+  G   F
Sbjct: 281 MDEDMVSLDPIEFNSEEEPYKDRIDSYQRKTGLTEAVQTGT---GKLNGI-PVAIGVMDF 340

Query: 61  DRGGGS 67
              GGS
Sbjct: 341 QFMGGS 342

[Close]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match: B1A944 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Carica papaya OX=3649 GN=accD PE=3 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 2.7e-12
Identity = 43/66 (65.15%), Postives = 48/66 (72.73%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDE+MV LDPIEFH EEEPYKDRIDSYQ KT LT+A+QTGT    +L G+ PI  G   F
Sbjct: 280 MDENMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAVQTGT---GQLNGI-PIALGVMDF 339

Query: 61  DRGGGS 67
              GGS
Sbjct: 340 QFMGGS 341

[Close]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match: Q0G9V3 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Daucus carota OX=4039 GN=accD PE=3 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 3.5e-12
Identity = 43/66 (65.15%), Postives = 47/66 (71.21%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQ KT LT+A+QTG     +L G+ PI  G   F
Sbjct: 273 MDEDMVSLDPIEFHSEEEPYKDRIDSYQRKTGLTEAVQTG---IGQLNGI-PIALGVMDF 332

Query: 61  DRGGGS 67
              GGS
Sbjct: 333 QFMGGS 334

[Close]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match: A0A2H4T210 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita maxima OX=3661 GN=accD PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.0e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 270 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 329

Query: 61  DRGGGS 67
              GGS
Sbjct: 330 QFMGGS 331

[Close]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match: A0A2H4T291 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita moschata OX=3662 GN=accD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 270 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 329

Query: 61  DRGGGS 67
              GGS
Sbjct: 330 KFMGGS 331

[Close]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match: A0A344AXQ6 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Cucurbita pepo OX=3663 GN=accD PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 47/66 (71.21%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFH EEEPYKDRIDSYQIKT LT+AIQTGT    KL G+ PI  G   F
Sbjct: 273 MDEDMVSLDPIEFHSEEEPYKDRIDSYQIKTGLTEAIQTGT---GKLNGI-PIAIGIMDF 332

Query: 61  DRGGGS 67
              GGS
Sbjct: 333 KFMGGS 334

[Close]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match: A0A6B9TSR4 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Gonostegia hirta OX=648870 GN=accD PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 2.3e-11
Identity = 45/66 (68.18%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFHLEEEPYKDRIDSYQ KT LT+A+QTGT    KL G+ P+  G   F
Sbjct: 268 MDEDMVSLDPIEFHLEEEPYKDRIDSYQKKTGLTEAVQTGT---GKLNGI-PVAIGVMDF 327

Query: 61  DRGGGS 67
              GGS
Sbjct: 328 QFMGGS 329

[Close]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match: A0A2H5A6F1 (Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic OS=Alnus glutinosa subsp. glutinosa OX=2004886 GN=accD PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 4.0e-11
Identity = 44/66 (66.67%), Postives = 49/66 (74.24%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV LDPIEFHLEEEPYKDRIDSYQ KT LT+A+QTGT    +L G+ P+  G   F
Sbjct: 287 MDEDMVSLDPIEFHLEEEPYKDRIDSYQRKTGLTEAVQTGT---GRLKGI-PVAIGIMDF 346

Query: 61  DRGGGS 67
              GGS
Sbjct: 347 QFMGGS 348

[Close]
BLAST of Clc09G22120 vs. TAIR 10
Match: ATCG00500.1 (acetyl-CoA carboxylase carboxyl transferase subunit beta )

HSP 1 Score: 60.5 bits (145), Expect = 1.3e-09
Identity = 37/66 (56.06%), Postives = 44/66 (66.67%), Query Frame = 0 

Query: 1   MDEDMVPLDPIEFHLEEEPYKDRIDSYQIKTRLTKAIQTGTVLAKKLVGLDPIGSGNPRF 60
           MDEDMV  DPI+FH +EEPYK+RIDS Q  T LT A+QTGT    +L G+ P+  G   F
Sbjct: 274 MDEDMVSADPIKFHSKEEPYKNRIDSAQKTTGLTDAVQTGT---GQLNGI-PVALGVMDF 333

Query: 61  DRGGGS 67
              GGS
Sbjct: 334 RFMGGS 335

The following BLAST results are available for this feature:
BLAST of Clc09G22120 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6579350.19.7e-1272.73Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic, ... [more]
YP_009447459.12.2e-1171.21acetyl-CoA carboxylase beta subunit [Cucurbita maxima] >ATY69918.1 acetyl-CoA ca... [more]
QWV60849.12.2e-1171.21acetyl-CoA carboxylase carboxyltransferase beta subunit [Cucurbita ficifolia][more]
QZL38806.12.2e-1171.21acetyl-CoA carboxylase beta subunit [Cucurbita ficifolia][more]
YP_009447544.12.8e-1171.21acetyl-CoA carboxylase beta subunit [Cucurbita moschata] >ATY70000.1 acetyl-CoA ... [more]
BLAST of Clc09G22120 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q49KY99.1e-1366.67Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
P491589.1e-1365.15Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q09X082.0e-1265.15Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
B1A9442.7e-1265.15Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
Q0G9V33.5e-1265.15Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
BLAST of Clc09G22120 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A2H4T2101.0e-1171.21Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A2H4T2911.4e-1171.21Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A344AXQ61.4e-1171.21Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A6B9TSR42.3e-1168.18Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
A0A2H5A6F14.0e-1166.67Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic O... [more]
BLAST of Clc09G22120 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00500.11.3e-0956.06acetyl-CoA carboxylase carboxyl transferase subunit beta [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Clc09G22120.1Clc09G22120.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:1901576 organic substance biosynthetic process
cellular_component GO:0009507 chloroplast
molecular_function GO:0046872 metal ion binding
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0016740 transferase activity