Clc09G21710 (gene) Watermelon (cordophanus) v2

Overview


Name	Clc09G21710
Type	gene
Organism	Citrullus lanatus subsp. cordophanus cv. cordophanus (Watermelon (cordophanus) v2)
Description	RING-type E3 ubiquitin transferase
Location	ClcChr09: 35079001 .. 35079522 (-)
RNA-Seq Expression	Clc09G21710
Synteny	Clc09G21710

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCAAGCAGCGACGCAGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCTGGCGCCGTCGTCACCATTTATCACTGCCTCATGGCTTGCTGGTGCGATCGCCGCCGCTTCAACGCCGGTGACCAAACGCCGGTAAACGATCCTCACTCCCTACCCATAACGGATACGCCGCGGAGCACGGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAATATGAGAAGCCAATGGCGGGGGACGGTGGCGGATGCGGTGGAGACGGCGATGGAGATGGCACGTGCGCGATATGTTTGAGTGAATTCGAAGAGGGAGAGGAAATAAGGACGTTGCCCGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTAATGCCACGCCGACGTCGTTTCACGATAGGCTGCGGTTTGAGACGCAGCCTAGTTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGATTGA

mRNA sequence

ATGTCAAGCAGCGACGCAGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCTGGCGCCGTCGTCACCATTTATCACTGCCTCATGGCTTGCTGGTGCGATCGCCGCCGCTTCAACGCCGGTGACCAAACGCCGGTAAACGATCCTCACTCCCTACCCATAACGGATACGCCGCGGAGCACGGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAATATGAGAAGCCAATGGCGGGGGACGGTGGCGGATGCGGTGGAGACGGCGATGGAGATGGCACGTGCGCGATATGTTTGAGTGAATTCGAAGAGGGAGAGGAAATAAGGACGTTGCCCGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTAATGCCACGCCGACGTCGTTTCACGATAGGCTGCGGTTTGAGACGCAGCCTAGTTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGATTGA

Coding sequence (CDS)

ATGTCAAGCAGCGACGCAGCCATTTACAGCCGAAAACTCGACATTTTCCTCATCGCCATCGGCTCCGCTGGCGCCGTCGTCACCATTTATCACTGCCTCATGGCTTGCTGGTGCGATCGCCGCCGCTTCAACGCCGGTGACCAAACGCCGGTAAACGATCCTCACTCCCTACCCATAACGGATACGCCGCGGAGCACGGAGAATTCGGTGGTTCATTTGATTCCGGCTCACAAATATGAGAAGCCAATGGCGGGGGACGGTGGCGGATGCGGTGGAGACGGCGATGGAGATGGCACGTGCGCGATATGTTTGAGTGAATTCGAAGAGGGAGAGGAAATAAGGACGTTGCCCGAGTGTATGCATTCGTATCACGTGCCGTGTATCGACATGTGGCTTTACTCTCACTCGAGCTGTCCGATGTGTCGTACTAATGCCACGCCGACGTCGTTTCACGATAGGCTGCGGTTTGAGACGCAGCCTAGTTCTGGGATTGTTGTGCACGTGCTTCCCACGAGGGATTGA

Protein sequence

MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITDTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTRD

Homology

[Close]

BLAST of Clc09G21710 vs. NCBI nr
Match: XP_038889238.1 (probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida])

HSP 1 Score: 339.7 bits (870), Expect = 1.4e-89
Identity = 157/171 (91.81%), Postives = 164/171 (95.91%), Query Frame = 0


Query: 1   MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPIT 60
           MS +DA IYSRKLDIFL+AIGSAGAVVTIYHC+MACWCDRRRFN+G QTP NDPHSLPIT
Sbjct: 1   MSDTDATIYSRKLDIFLVAIGSAGAVVTIYHCIMACWCDRRRFNSGGQTPANDPHSLPIT 60

Query: 61  DTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGD-GDGDGTCAICLSEFEEGEEIRTLPEC 120
           DTPRSTENSVVHLIPAHKYEK MA DGGGCGGD G+GDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 61  DTPRSTENSVVHLIPAHKYEKRMAVDGGGCGGDHGEGDGTCAICLSEFEEGEEIKTLPEC 120

Query: 121 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLP 171
           MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRL+FETQPSSGIVVHVLP
Sbjct: 121 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLQFETQPSSGIVVHVLP 171

[Close]

BLAST of Clc09G21710 vs. NCBI nr
Match: XP_004142830.1 (RING-H2 finger protein ATL52 [Cucumis sativus])

HSP 1 Score: 323.6 bits (828), Expect = 1.1e-84
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           S+ DAAIYSRKLDIFLIAIGSAGAVVTIYHC+MACWCDRRRF +GDQ+ VNDPH+LPITD
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECMH 121
           TPRSTENSVVHLIPAHKYEK MA DGGG G D DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123

Query: 122 SYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTR 173
           SYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRL+FETQ +SGIVVHVLPTR
Sbjct: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of Clc09G21710 vs. NCBI nr
Match: XP_008458935.1 (PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa] >TYK22889.1 RING-H2 finger protein ATL52-like [Cucumis melo var. makuwa])

HSP 1 Score: 321.6 bits (823), Expect = 4.1e-84
Identity = 150/173 (86.71%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           S+ DAAIYSRKLDIFLIAIGSAGAVVTIYHC+MACWCDRRRF +GDQ+  NDPH+LPITD
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKPMA--GDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPAHKYEK MA  G GGG G D DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTR 173
            HSYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRL+F+TQP+SGIVVHVLPTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Clc09G21710 vs. NCBI nr
Match: XP_022939139.1 (RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 finger protein ATL52, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 317.0 bits (811), Expect = 1.0e-82
Identity = 146/173 (84.39%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPIT 60
           MSSSDAA+YS+KLDIFLIA+GSAGAVVTIYHC+MACWCDRRR NAGDQTP ND HS+ + 
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  DTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECM 120
           +TPRSTENSVVHLIPAHKYEK  A D GGC    DGDGTCAICLSEFEEGEEIRTLPEC+
Sbjct: 61  ETPRSTENSVVHLIPAHKYEKQKAVDSGGC----DGDGTCAICLSEFEEGEEIRTLPECL 120

Query: 121 HSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTRD 174
           HSYHVPCIDMWLYSHSSCPMCRT+ATPTS HDRL+FETQPSSGI+VHV PTR+
Sbjct: 121 HSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Clc09G21710 vs. NCBI nr
Match: XP_023551520.1 (probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 314.7 bits (805), Expect = 5.0e-82
Identity = 145/173 (83.82%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPIT 60
           MSSSDAA+YS+KLDIFLIA+GSAGAVVTIYHC+MACWCDRRR NAGDQTP ND HS+ + 
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  DTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECM 120
           +TPRSTENSVVHLIPA+KYEK  A D GGC    DGDGTCAICLSEFEEGEEIRTLPEC+
Sbjct: 61  ETPRSTENSVVHLIPAYKYEKQKAVDSGGC----DGDGTCAICLSEFEEGEEIRTLPECL 120

Query: 121 HSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTRD 174
           HSYHVPCIDMWLYSHSSCPMCRT+ATPTS HDRL+FETQPSSGI+VHV PTR+
Sbjct: 121 HSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot
Match: Q9LF64 (RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-18
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQT-PVNDPHSLPIT 61
           SSS ++ +S  L I LI I ++  ++  Y+ L++ +C R    +  +T  +N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  DTPRSTEN------SVVHLIPAHKYEKPMAGDGGGCGGDGDGDGT-CAICLSEFEEGEEI 121
            T R + N      S++  I  +KY+           GDG  DG+ C++CLSEFEE E +
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYK----------SGDGFVDGSDCSVCLSEFEENESL 166

Query: 122 RTLPECMHSYHVPCIDMWLYSHSSCPMCRTNAT 147
           R LP+C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 RLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot
Match: Q9SRQ8 (RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           SSSD +     L I LI I ++  ++  Y+ L++ +C RRR N+   T     + +    
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNS-SSTSAAAINRISSDY 111

Query: 62  TPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDG-----------------DG---DGTCA 121
           T + T N+       +    P    GGG GGDG                 DG      C+
Sbjct: 112 TWQGTNNN-----NNNGATNPNQTIGGG-GGDGLDESLIKSITVYKYRKMDGFVESSDCS 171

Query: 122 ICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCR 143
           +CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR
Sbjct: 172 VCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot
Match: Q9LRB7 (E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.2e-15
Identity = 46/129 (35.66%), Postives = 63/129 (48.84%), Query Frame = 0


Query: 25  AVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPIT----------DTPRSTENSVVHLI 84
           A +T+   L+ C+CD RR  A   T  +     P             T    +  V+  +
Sbjct: 49  AALTLAFVLLQCYCDERR-RAVTTTSTSGRGRRPRPRRRSGSGGDGGTGGGVDPEVLRSL 108

Query: 85  PAHKYEKPMAGDGGGCGGDGDGDGT-CAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLY 143
           P   Y +  A        + D DG  CA+CL+E E+GEE R LP C H +H  C+DMWL 
Sbjct: 109 PVTVYSRSTAAAAAKEEEEEDDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG 168

[Close]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot
Match: Q9ZT49 (Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=ATL45 PE=1 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.5e-15
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 92  GDGDGDGTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNATP 148
           GDGD    CAIC++EF EGEEIR LP C H++HV CID WL S SSCP CR    P
Sbjct: 105 GDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160

[Close]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot
Match: Q9LSW9 (RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 7.1e-15
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 40  RRRFNAGDQTPVNDPHSLPITDTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGD-- 99
           RRR N  D   V  P         R  + SV+  IP  K++K    + G   G+G+ +  
Sbjct: 78  RRRRNDQDPLMVYSPEL-----RSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 137

Query: 100 ---GTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNAT-PTSF 151
                C++CLSEF++ E++R +P C H +H+ CID+WL ++++CP+CRT  +  TSF
Sbjct: 138 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

[Close]

BLAST of Clc09G21710 vs. ExPASy TrEMBL
Match: A0A0A0KNT5 (RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 5.2e-85
Identity = 151/171 (88.30%), Postives = 161/171 (94.15%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           S+ DAAIYSRKLDIFLIAIGSAGAVVTIYHC+MACWCDRRRF +GDQ+ VNDPH+LPITD
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFLSGDQSSVNDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECMH 121
           TPRSTENSVVHLIPAHKYEK MA DGGG G D DGDGTCAICLSEFEEGEEI+TLPEC H
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGKDVDGDGTCAICLSEFEEGEEIKTLPECKH 123

Query: 122 SYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTR 173
           SYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRL+FETQ +SGIVVHVLPTR
Sbjct: 124 SYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFETQSNSGIVVHVLPTR 174

[Close]

BLAST of Clc09G21710 vs. ExPASy TrEMBL
Match: A0A5D3DI14 (RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold334G00280 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 150/173 (86.71%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           S+ DAAIYSRKLDIFLIAIGSAGAVVTIYHC+MACWCDRRRF +GDQ+  NDPH+LPITD
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKPMA--GDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPAHKYEK MA  G GGG G D DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTR 173
            HSYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRL+F+TQP+SGIVVHVLPTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Clc09G21710 vs. ExPASy TrEMBL
Match: A0A1S3C9L0 (RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 SV=1)

HSP 1 Score: 321.6 bits (823), Expect = 2.0e-84
Identity = 150/173 (86.71%), Postives = 161/173 (93.06%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           S+ DAAIYSRKLDIFLIAIGSAGAVVTIYHC+MACWCDRRRF +GDQ+  NDPH+LPITD
Sbjct: 4   STGDAAIYSRKLDIFLIAIGSAGAVVTIYHCIMACWCDRRRFTSGDQSSANDPHTLPITD 63

Query: 62  TPRSTENSVVHLIPAHKYEKPMA--GDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPEC 121
           TPRSTENSVVHLIPAHKYEK MA  G GGG G D DGDGTCAICLSEFEEGEEI+TLPEC
Sbjct: 64  TPRSTENSVVHLIPAHKYEKRMAVDGGGGGVGKDVDGDGTCAICLSEFEEGEEIKTLPEC 123

Query: 122 MHSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTR 173
            HSYH+PCIDMWLYSHSSCPMCRTNATPTSF+DRL+F+TQP+SGIVVHVLPTR
Sbjct: 124 KHSYHMPCIDMWLYSHSSCPMCRTNATPTSFNDRLQFQTQPNSGIVVHVLPTR 176

[Close]

BLAST of Clc09G21710 vs. ExPASy TrEMBL
Match: A0A6J1FG87 (RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137 PE=3 SV=1)

HSP 1 Score: 317.0 bits (811), Expect = 4.9e-83
Identity = 146/173 (84.39%), Postives = 158/173 (91.33%), Query Frame = 0


Query: 1   MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPIT 60
           MSSSDAA+YS+KLDIFLIA+GSAGAVVTIYHC+MACWCDRRR NAGDQTP ND HS+ + 
Sbjct: 1   MSSSDAAVYSQKLDIFLIAVGSAGAVVTIYHCIMACWCDRRRLNAGDQTPANDLHSMSLA 60

Query: 61  DTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPECM 120
           +TPRSTENSVVHLIPAHKYEK  A D GGC    DGDGTCAICLSEFEEGEEIRTLPEC+
Sbjct: 61  ETPRSTENSVVHLIPAHKYEKQKAVDSGGC----DGDGTCAICLSEFEEGEEIRTLPECL 120

Query: 121 HSYHVPCIDMWLYSHSSCPMCRTNATPTSFHDRLRFETQPSSGIVVHVLPTRD 174
           HSYHVPCIDMWLYSHSSCPMCRT+ATPTS HDRL+FETQPSSGI+VHV PTR+
Sbjct: 121 HSYHVPCIDMWLYSHSSCPMCRTDATPTSVHDRLQFETQPSSGIIVHVRPTRN 169

[Close]

BLAST of Clc09G21710 vs. ExPASy TrEMBL
Match: A0A6J1BX43 (RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC111006127 PE=3 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 1.9e-58
Identity = 124/180 (68.89%), Postives = 133/180 (73.89%), Query Frame = 0


Query: 1   MSSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRR-FNAGDQTP-VNDPHSLP 60
           MS S+A  YS KLDIFLIA+GSAG VVTIYHC+MACWCDRRR    G QTP   D HSLP
Sbjct: 6   MSPSEAIAYSHKLDIFLIAVGSAGIVVTIYHCIMACWCDRRRPSGGGGQTPAARDLHSLP 65

Query: 61  ITDTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGDGTCAICLSEFEEGEEIRTLPE 120
             +TPRSTENSVVHLIPAHKYEK M            GDGTCAICLSEFEEGE++RTLPE
Sbjct: 66  GLETPRSTENSVVHLIPAHKYEKRM-------DHLEVGDGTCAICLSEFEEGEDLRTLPE 125

Query: 121 CMHSYHVPCIDMWLYSHSSCPMCRTNATPTS-----FHDRLRFETQPSSGIVVHVLPTRD 174
           CMHSYHVPCIDMWLYSHSSCPMCR +ATPT      F D L  E    S +VVHV  TR+
Sbjct: 126 CMHSYHVPCIDMWLYSHSSCPMCRADATPTPSSPAVFRDGLDSE----SVVVVHVRATRE 174

[Close]

BLAST of Clc09G21710 vs. TAIR 10
Match: AT5G17600.1 (RING/U-box superfamily protein )

HSP 1 Score: 94.0 bits (232), Expect = 1.3e-19
Identity = 56/153 (36.60%), Postives = 86/153 (56.21%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQT-PVNDPHSLPIT 61
           SSS ++ +S  L I LI I ++  ++  Y+ L++ +C R    +  +T  +N       +
Sbjct: 47  SSSSSSSFSPLL-IALIGILTSALILVSYYTLISKYCHRHHQTSSSETLNLNHNGEGFFS 106

Query: 62  DTPRSTEN------SVVHLIPAHKYEKPMAGDGGGCGGDGDGDGT-CAICLSEFEEGEEI 121
            T R + N      S++  I  +KY+           GDG  DG+ C++CLSEFEE E +
Sbjct: 107 STQRISTNGDGLNESMIKSITVYKYK----------SGDGFVDGSDCSVCLSEFEENESL 166

Query: 122 RTLPECMHSYHVPCIDMWLYSHSSCPMCRTNAT 147
           R LP+C H++H+PCID WL SHS+CP+CR   T
Sbjct: 167 RLLPKCNHAFHLPCIDTWLKSHSNCPLCRAFVT 188

[Close]

BLAST of Clc09G21710 vs. TAIR 10
Match: AT3G03550.1 (RING/U-box superfamily protein )

HSP 1 Score: 83.2 bits (204), Expect = 2.3e-16
Identity = 58/161 (36.02%), Postives = 82/161 (50.93%), Query Frame = 0


Query: 2   SSSDAAIYSRKLDIFLIAIGSAGAVVTIYHCLMACWCDRRRFNAGDQTPVNDPHSLPITD 61
           SSSD +     L I LI I ++  ++  Y+ L++ +C RRR N+   T     + +    
Sbjct: 52  SSSDFS----PLLIALIGILASAFILVSYYTLISKYCHRRRHNS-SSTSAAAINRISSDY 111

Query: 62  TPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDG-----------------DG---DGTCA 121
           T + T N+       +    P    GGG GGDG                 DG      C+
Sbjct: 112 TWQGTNNN-----NNNGATNPNQTIGGG-GGDGLDESLIKSITVYKYRKMDGFVESSDCS 171

Query: 122 ICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCR 143
           +CLSEF+E E +R LP+C H++HVPCID WL SHS+CP+CR
Sbjct: 172 VCLSEFQENESLRLLPKCNHAFHVPCIDTWLKSHSNCPLCR 201

[Close]

BLAST of Clc09G21710 vs. TAIR 10
Match: AT4G35480.1 (RING-H2 finger A3B )

HSP 1 Score: 82.4 bits (202), Expect = 3.9e-16
Identity = 35/56 (62.50%), Postives = 39/56 (69.64%), Query Frame = 0


Query: 92  GDGDGDGTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNATP 148
           GDGD    CAIC++EF EGEEIR LP C H++HV CID WL S SSCP CR    P
Sbjct: 105 GDGDSSTECAICITEFSEGEEIRILPLCSHAFHVACIDKWLTSRSSCPSCRRILVP 160

[Close]

BLAST of Clc09G21710 vs. TAIR 10
Match: AT5G43420.1 (RING/U-box superfamily protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.1e-16
Identity = 42/117 (35.90%), Postives = 66/117 (56.41%), Query Frame = 0


Query: 40  RRRFNAGDQTPVNDPHSLPITDTPRSTENSVVHLIPAHKYEKPMAGDGGGCGGDGDGD-- 99
           RRR N  D   V  P         R  + SV+  IP  K++K    + G   G+G+ +  
Sbjct: 78  RRRRNDQDPLMVYSPEL-----RSRGLDESVIRAIPIFKFKKRYDQNDGVFTGEGEEEEE 137

Query: 100 ---GTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNAT-PTSF 151
                C++CLSEF++ E++R +P C H +H+ CID+WL ++++CP+CRT  +  TSF
Sbjct: 138 KRSQECSVCLSEFQDEEKLRIIPNCSHLFHIDCIDVWLQNNANCPLCRTRVSCDTSF 189

[Close]

BLAST of Clc09G21710 vs. TAIR 10
Match: AT1G04360.1 (RING/U-box superfamily protein )

HSP 1 Score: 81.3 bits (199), Expect = 8.6e-16
Identity = 38/111 (34.23%), Postives = 63/111 (56.76%), Query Frame = 0


Query: 40  RRRFNAGDQTP--VNDPHSLPITDTPRSTENSVVHLIPAHKYEK--PMAGDGGGCGGDGD 99
           RRR  + DQ P  +  PH     +  R  + S +  IP  K++K   +AG+         
Sbjct: 79  RRRRRSSDQNPLMIYSPH-----EVNRGLDESAIRAIPVFKFKKRDVVAGE----EDQSK 138

Query: 100 GDGTCAICLSEFEEGEEIRTLPECMHSYHVPCIDMWLYSHSSCPMCRTNAT 147
               C++CL+EF+E E++R +P C H +H+ CID+WL  +++CP+CRT+ +
Sbjct: 139 NSQECSVCLNEFQEDEKLRIIPNCCHVFHIDCIDIWLQGNANCPLCRTSVS 180

The following BLAST results are available for this feature:

BLAST of Clc09G21710 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038889238.1	1.4e-89	91.81	probable E3 ubiquitin-protein ligase ATL44 [Benincasa hispida]	[more]
XP_004142830.1	1.1e-84	88.30	RING-H2 finger protein ATL52 [Cucumis sativus]	[more]
XP_008458935.1	4.1e-84	86.71	PREDICTED: RING-H2 finger protein ATL52-like [Cucumis melo] >KAA0042487.1 RING-H...	[more]
XP_022939139.1	1.0e-82	84.39	RING-H2 finger protein ATL52-like [Cucurbita moschata] >KAG7016242.1 RING-H2 fin...	[more]
XP_023551520.1	5.0e-82	83.82	probable E3 ubiquitin-protein ligase ATL44 [Cucurbita pepo subsp. pepo]	[more]

BLAST of Clc09G21710 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LF64	1.8e-18	36.60	RING-H2 finger protein ATL52 OS=Arabidopsis thaliana OX=3702 GN=ATL52 PE=2 SV=1	[more]
Q9SRQ8	3.2e-15	36.02	RING-H2 finger protein ATL51 OS=Arabidopsis thaliana OX=3702 GN=ATL51 PE=2 SV=2	[more]
Q9LRB7	3.2e-15	35.66	E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5....	[more]
Q9ZT49	5.5e-15	62.50	Probable E3 ubiquitin-protein ligase ATL45 OS=Arabidopsis thaliana OX=3702 GN=AT...	[more]
Q9LSW9	7.1e-15	35.90	RING-H2 finger protein ATL16 OS=Arabidopsis thaliana OX=3702 GN=ATL16 PE=2 SV=1	[more]

BLAST of Clc09G21710 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KNT5	5.2e-85	88.30	RING-type E3 ubiquitin transferase OS=Cucumis sativus OX=3659 GN=Csa_5G512950 PE...	[more]
A0A5D3DI14	2.0e-84	86.71	RING-type E3 ubiquitin transferase OS=Cucumis melo var. makuwa OX=1194695 GN=E56...	[more]
A0A1S3C9L0	2.0e-84	86.71	RING-type E3 ubiquitin transferase OS=Cucumis melo OX=3656 GN=LOC103498194 PE=3 ...	[more]
A0A6J1FG87	4.9e-83	84.39	RING-type E3 ubiquitin transferase OS=Cucurbita moschata OX=3662 GN=LOC111445137...	[more]
A0A6J1BX43	1.9e-58	68.89	RING-type E3 ubiquitin transferase OS=Momordica charantia OX=3673 GN=LOC11100612...	[more]

BLAST of Clc09G21710 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G17600.1	1.3e-19	36.60	RING/U-box superfamily protein	[more]
AT3G03550.1	2.3e-16	36.02	RING/U-box superfamily protein	[more]
AT4G35480.1	3.9e-16	62.50	RING-H2 finger A3B	[more]
AT5G43420.1	5.1e-16	35.90	RING/U-box superfamily protein	[more]
AT1G04360.1	8.6e-16	34.23	RING/U-box superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (cordophanus) v2
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 100..141 e-value: 5.0E-7 score: 39.4
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 99..142 e-value: 5.2E-13 score: 49.1
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 100..142 score: 12.238477
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 57..148 e-value: 6.4E-21 score: 75.8
IPR044675	E3 ubiquitin-protein ligase RING1-like	PANTHER	PTHR45676	RING-H2 FINGER PROTEIN ATL51-RELATED	coord: 8..153
None	No IPR available	PANTHER	PTHR45676:SF43	RING-H2 FINGER PROTEIN ATL52-LIKE	coord: 8..153
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 94..147

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Clc09G21710.1	Clc09G21710.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
cellular_component	GO:0016021	integral component of membrane